Wall clock time and date at job start Tue Mar 31 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47055 * 2 1 4 4 C 1.52996 * 109.47360 * 180.02562 * 3 2 1 5 5 O 1.42892 * 109.47323 * 179.97438 * 4 3 2 6 6 C 1.35716 * 117.00165 * 179.97438 * 5 4 3 7 7 C 1.38994 * 119.91247 * 179.97438 * 6 5 4 8 8 C 1.37702 * 120.08713 * 180.02562 * 7 6 5 9 9 C 1.39728 * 119.91489 * 359.97438 * 8 7 6 10 10 C 1.47602 * 120.09530 * 180.02562 * 9 8 7 11 11 O 1.21584 * 119.99276 * 0.02562 * 10 9 8 12 12 N 1.34765 * 120.00299 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00019 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46702 * 35.00197 * 13 12 10 15 15 C 1.50696 * 109.47038 * 154.99679 * 13 12 10 16 16 O 1.21211 * 120.00634 * 0.02562 * 15 13 12 17 17 O 1.34315 * 119.99939 * 180.02562 * 15 13 12 18 18 C 1.34918 * 117.00261 * 180.02562 * 17 15 13 19 19 H 1.08000 * 119.99971 * 359.97438 * 18 17 15 20 20 C 1.38748 * 120.00338 * 180.02562 * 18 17 15 21 21 N 1.31445 * 119.99822 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00318 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46971 * 59.99426 * 22 20 18 24 24 H 1.48496 * 109.47258 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46855 * 299.99505 * 22 20 18 26 26 C 1.52992 * 109.47485 * 275.00300 * 13 12 10 27 27 H 1.08998 * 109.46862 * 300.00408 * 26 13 12 28 28 C 1.52997 * 109.47482 * 179.97438 * 26 13 12 29 29 O 1.42905 * 109.46980 * 59.99535 * 26 13 12 30 30 C 1.39743 * 119.82075 * 0.27844 * 9 8 7 31 31 C 1.37701 * 119.90920 * 359.46420 * 30 9 8 32 32 H 1.08996 * 109.47144 * 300.00272 * 1 2 3 33 33 H 1.09003 * 109.47198 * 60.00326 * 1 2 3 34 34 H 1.09000 * 109.46770 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47144 * 239.99728 * 2 1 3 36 36 H 1.09003 * 109.47198 * 119.99674 * 2 1 3 37 37 H 1.08998 * 109.47674 * 59.99427 * 3 2 1 38 38 H 1.09003 * 109.46851 * 299.99886 * 3 2 1 39 39 H 1.08998 * 109.47321 * 59.99056 * 4 3 2 40 40 H 1.09003 * 109.46919 * 299.99689 * 4 3 2 41 41 H 1.08001 * 119.95718 * 0.02919 * 7 6 5 42 42 H 1.08001 * 120.04372 * 179.97438 * 8 7 6 43 43 H 0.96996 * 120.00680 * 0.02562 * 12 10 9 44 44 H 0.96999 * 120.00114 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.47153 * 59.99783 * 28 26 13 46 46 H 1.09001 * 109.46832 * 299.99974 * 28 26 13 47 47 H 1.09004 * 109.47261 * 179.97438 * 28 26 13 48 48 H 0.96696 * 113.99968 * 299.99977 * 29 26 13 49 49 H 1.08000 * 120.03916 * 179.72645 * 30 9 8 50 50 H 1.08003 * 119.95318 * 180.24732 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0462 2.7898 -0.0012 6 6 5.3917 2.9677 -0.0013 7 6 5.9209 4.2529 -0.0024 8 6 7.2855 4.4376 -0.0031 9 6 8.1385 3.3308 -0.0020 10 6 9.6018 3.5242 -0.0021 11 8 10.0664 4.6477 -0.0026 12 7 10.4227 2.4554 -0.0016 13 6 11.8752 2.6474 -0.0023 14 1 12.1252 3.5299 0.5865 15 6 12.5420 1.4371 0.5989 16 8 11.8708 0.5061 0.9888 17 8 13.8804 1.3899 0.7026 18 6 14.4135 0.2777 1.2496 19 1 13.7692 -0.5232 1.5810 20 6 15.7894 0.1633 1.3873 21 7 16.5735 1.1383 0.9844 22 14 16.5275 -1.3762 2.1453 23 1 16.1488 -2.5591 1.3313 24 1 18.0069 -1.2515 2.1780 25 1 16.0136 -1.5422 3.5286 26 6 12.3638 2.8379 -1.4395 27 1 12.1137 1.9553 -2.0282 28 6 13.8805 3.0389 -1.4401 29 8 11.7313 3.9856 -2.0095 30 6 7.6024 2.0403 -0.0063 31 6 6.2367 1.8641 -0.0003 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 1.6766 1.9565 0.8899 38 1 1.6766 1.9563 -0.8900 39 1 3.9330 0.9288 -0.8907 40 1 3.9337 0.9287 0.8892 41 1 5.2611 5.1079 -0.0028 42 1 7.6960 5.4366 -0.0043 43 1 10.0521 1.5590 -0.0016 44 1 17.5354 1.0586 1.0810 45 1 14.3633 2.1638 -1.0052 46 1 14.1302 3.9217 -0.8514 47 1 14.2287 3.1742 -2.4642 48 1 10.7666 3.9278 -2.0414 49 1 8.2584 1.1824 -0.0099 50 1 5.8217 0.8670 0.0005 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071921341.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:43 Heat of formation + Delta-G solvation = -187.364144 kcal Electronic energy + Delta-G solvation = -32503.020999 eV Core-core repulsion = 27881.929984 eV Total energy + Delta-G solvation = -4621.091015 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.79005 -40.09771 -39.04729 -37.65067 -36.69322 -35.56302 -35.55013 -34.00768 -32.34919 -31.71067 -31.06132 -30.59986 -29.42507 -26.97509 -25.35171 -24.64724 -23.54504 -22.47436 -21.83151 -21.48935 -20.57226 -19.96424 -18.70624 -18.03946 -17.93648 -17.36162 -16.85357 -16.62103 -16.27559 -15.63171 -15.26514 -15.21930 -15.02194 -14.75222 -14.50284 -14.44010 -14.27297 -14.00671 -13.85806 -13.67201 -13.39167 -13.21817 -12.84476 -12.76460 -12.59568 -12.30247 -12.14636 -11.88067 -11.69066 -11.65725 -11.45815 -11.39730 -11.37977 -11.25411 -11.09141 -11.02074 -10.99937 -10.54508 -10.42285 -10.02399 -9.92090 -9.83333 -9.35188 -9.34348 -8.82281 -8.68304 -8.49665 -6.52621 -4.21428 0.70728 1.06841 2.70471 2.74976 2.97732 3.01893 3.14698 3.18775 3.30975 3.68423 3.83786 4.27801 4.30116 4.31906 4.44309 4.52227 4.56620 4.68981 4.70300 4.79305 4.81948 4.96546 4.97947 5.00835 5.12622 5.21023 5.22382 5.23176 5.32835 5.33856 5.42001 5.56986 5.66102 5.68115 5.75301 5.79632 5.85030 5.94761 5.99306 6.15582 6.20280 6.38171 6.44955 6.52426 6.67728 7.00773 7.21043 7.27795 7.54331 7.80786 7.91707 8.23814 8.49121 8.95221 9.64107 10.63689 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.001859 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.818821 B =15057.649561 C =16772.985041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.055 3.945 5 O -0.312 6.312 6 C 0.155 3.845 7 C -0.162 4.162 8 C -0.017 4.017 9 C -0.171 4.171 10 C 0.556 3.444 11 O -0.526 6.526 12 N -0.710 5.710 13 C 0.129 3.871 14 H 0.122 0.878 15 C 0.392 3.608 16 O -0.553 6.553 17 O -0.194 6.194 18 C -0.390 4.390 19 H 0.097 0.903 20 C 0.047 3.953 21 N -0.856 5.856 22 Si 0.945 3.055 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C 0.104 3.896 27 H 0.055 0.945 28 C -0.154 4.154 29 O -0.549 6.549 30 C -0.041 4.041 31 C -0.217 4.217 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.408 0.592 44 H 0.273 0.727 45 H 0.114 0.886 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.366 0.634 49 H 0.133 0.867 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.956 0.131 -4.178 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.020 4.020 5 O -0.226 6.226 6 C 0.108 3.892 7 C -0.181 4.181 8 C -0.036 4.036 9 C -0.174 4.174 10 C 0.344 3.656 11 O -0.403 6.403 12 N -0.365 5.365 13 C 0.022 3.978 14 H 0.140 0.860 15 C 0.238 3.762 16 O -0.451 6.451 17 O -0.100 6.100 18 C -0.466 4.466 19 H 0.114 0.886 20 C -0.159 4.159 21 N -0.491 5.491 22 Si 0.769 3.231 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C 0.044 3.956 27 H 0.073 0.927 28 C -0.211 4.211 29 O -0.355 6.355 30 C -0.060 4.060 31 C -0.236 4.236 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.155 0.845 42 H 0.163 0.837 43 H 0.246 0.754 44 H 0.083 0.917 45 H 0.132 0.868 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.213 0.787 49 H 0.151 0.849 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.040 1.075 -4.133 25.401 hybrid contribution -0.332 -1.730 0.598 1.860 sum -25.371 -0.655 -3.536 25.625 Atomic orbital electron populations 1.21749 0.95102 1.01977 1.02113 1.21444 0.96523 0.95481 1.02581 1.21589 0.92309 0.97935 1.03871 1.22935 0.95579 0.81614 1.01847 1.86018 1.19010 1.29662 1.87874 1.19266 0.82242 0.94210 0.93434 1.20398 0.94997 0.94892 1.07810 1.21096 0.91401 0.99212 0.91892 1.19813 0.92854 0.94159 1.10612 1.18204 0.86189 0.84623 0.76588 1.90852 1.77121 1.23018 1.49324 1.45769 1.05615 1.10159 1.74976 1.21124 0.79696 0.97617 0.99335 0.86036 1.22706 0.83765 0.87979 0.81717 1.90541 1.65255 1.38641 1.50642 1.83909 1.18140 1.41687 1.66285 1.21226 0.90598 0.94497 1.40244 0.88566 1.25332 0.94899 0.99001 0.96624 1.69965 1.04889 1.31383 1.42896 0.85728 0.77811 0.80003 0.79561 1.19458 1.20282 1.19482 1.22069 0.95443 0.88437 0.89666 0.92686 1.22033 0.90829 1.05951 1.02315 1.86583 1.23616 1.41813 1.83456 1.21206 0.94800 0.96440 0.93504 1.21171 0.93965 0.98365 1.10104 0.92519 0.92522 0.92395 0.91572 0.91554 0.90710 0.90725 0.91682 0.91655 0.84469 0.83661 0.75399 0.91738 0.86828 0.91735 0.92415 0.78698 0.84942 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.52 5.93 -26.73 -0.16 -0.68 16 3 C -0.12 -0.63 5.58 -26.73 -0.15 -0.78 16 4 C 0.06 0.36 4.73 37.16 0.18 0.53 16 5 O -0.31 -2.89 10.12 -18.85 -0.19 -3.08 16 6 C 0.15 1.55 6.70 -39.02 -0.26 1.29 16 7 C -0.16 -1.63 9.97 -39.50 -0.39 -2.02 16 8 C -0.02 -0.19 9.58 -39.22 -0.38 -0.57 16 9 C -0.17 -2.16 5.88 -104.96 -0.62 -2.77 16 10 C 0.56 8.61 6.36 -12.44 -0.08 8.53 16 11 O -0.53 -9.57 14.38 -12.12 -0.17 -9.74 16 12 N -0.71 -11.48 4.81 -55.96 -0.27 -11.75 16 13 C 0.13 2.48 2.49 -69.08 -0.17 2.31 16 14 H 0.12 2.50 7.58 -51.93 -0.39 2.10 16 15 C 0.39 9.15 7.20 36.00 0.26 9.41 16 16 O -0.55 -13.61 15.07 -19.05 -0.29 -13.89 16 17 O -0.19 -5.14 6.67 -20.71 -0.14 -5.28 16 18 C -0.39 -10.83 9.64 30.92 0.30 -10.53 16 19 H 0.10 2.69 6.86 -52.49 -0.36 2.33 16 20 C 0.05 1.25 5.49 -17.53 -0.10 1.16 16 21 N -0.86 -23.59 13.67 55.48 0.76 -22.83 16 22 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 C 0.10 1.91 3.41 -26.74 -0.09 1.82 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 C -0.15 -3.02 9.04 37.16 0.34 -2.69 16 29 O -0.55 -9.88 12.46 -52.64 -0.66 -10.54 16 30 C -0.04 -0.44 9.53 -39.22 -0.37 -0.82 16 31 C -0.22 -2.08 9.01 -39.50 -0.36 -2.44 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 40 H 0.07 0.39 7.65 -51.93 -0.40 -0.01 16 41 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.15 1.59 7.64 -52.49 -0.40 1.19 16 43 H 0.41 6.11 5.81 -40.82 -0.24 5.88 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.11 2.58 5.32 -51.93 -0.28 2.30 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.37 5.85 6.54 45.56 0.30 6.15 16 49 H 0.13 1.31 6.39 -52.49 -0.34 0.97 16 50 H 0.13 0.99 6.28 -52.48 -0.33 0.66 16 LS Contribution 414.04 15.07 6.24 6.24 Total: -1.00 -32.10 414.04 -8.04 -40.14 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -6.62 Total: 13.90 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.69 Total: 1.51 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.49 Total: -34.58 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.45 Total: -42.54 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.10 -8.04 -40.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921341.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.224 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds