Wall clock time and date at job start Tue Mar 31 2020 06:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47055 * 2 1 4 4 C 1.52996 * 109.47360 * 180.02562 * 3 2 1 5 5 O 1.42892 * 109.47323 * 179.97438 * 4 3 2 6 6 C 1.35716 * 117.00165 * 179.97438 * 5 4 3 7 7 C 1.38994 * 119.91247 * 179.97438 * 6 5 4 8 8 C 1.37702 * 120.08713 * 180.02562 * 7 6 5 9 9 C 1.39728 * 119.91489 * 359.97438 * 8 7 6 10 10 C 1.47602 * 120.09530 * 180.02562 * 9 8 7 11 11 O 1.21584 * 119.99276 * 0.02562 * 10 9 8 12 12 N 1.34765 * 120.00299 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00019 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46702 * 35.00197 * 13 12 10 15 15 C 1.50696 * 109.47038 * 154.99679 * 13 12 10 16 16 O 1.21211 * 120.00634 * 0.02562 * 15 13 12 17 17 O 1.34315 * 119.99939 * 180.02562 * 15 13 12 18 18 C 1.34918 * 117.00261 * 180.02562 * 17 15 13 19 19 H 1.08000 * 119.99971 * 359.97438 * 18 17 15 20 20 C 1.38748 * 120.00338 * 180.02562 * 18 17 15 21 21 N 1.31445 * 119.99822 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00318 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46971 * 59.99426 * 22 20 18 24 24 H 1.48496 * 109.47258 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46855 * 299.99505 * 22 20 18 26 26 C 1.52992 * 109.47485 * 275.00300 * 13 12 10 27 27 H 1.08998 * 109.46862 * 300.00408 * 26 13 12 28 28 C 1.52997 * 109.47482 * 179.97438 * 26 13 12 29 29 O 1.42905 * 109.46980 * 59.99535 * 26 13 12 30 30 C 1.39743 * 119.82075 * 0.27844 * 9 8 7 31 31 C 1.37701 * 119.90920 * 359.46420 * 30 9 8 32 32 H 1.08996 * 109.47144 * 300.00272 * 1 2 3 33 33 H 1.09003 * 109.47198 * 60.00326 * 1 2 3 34 34 H 1.09000 * 109.46770 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47144 * 239.99728 * 2 1 3 36 36 H 1.09003 * 109.47198 * 119.99674 * 2 1 3 37 37 H 1.08998 * 109.47674 * 59.99427 * 3 2 1 38 38 H 1.09003 * 109.46851 * 299.99886 * 3 2 1 39 39 H 1.08998 * 109.47321 * 59.99056 * 4 3 2 40 40 H 1.09003 * 109.46919 * 299.99689 * 4 3 2 41 41 H 1.08001 * 119.95718 * 0.02919 * 7 6 5 42 42 H 1.08001 * 120.04372 * 179.97438 * 8 7 6 43 43 H 0.96996 * 120.00680 * 0.02562 * 12 10 9 44 44 H 0.96999 * 120.00114 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.47153 * 59.99783 * 28 26 13 46 46 H 1.09001 * 109.46832 * 299.99974 * 28 26 13 47 47 H 1.09004 * 109.47261 * 179.97438 * 28 26 13 48 48 H 0.96696 * 113.99968 * 299.99977 * 29 26 13 49 49 H 1.08000 * 120.03916 * 179.72645 * 30 9 8 50 50 H 1.08003 * 119.95318 * 180.24732 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0462 2.7898 -0.0012 6 6 5.3917 2.9677 -0.0013 7 6 5.9209 4.2529 -0.0024 8 6 7.2855 4.4376 -0.0031 9 6 8.1385 3.3308 -0.0020 10 6 9.6018 3.5242 -0.0021 11 8 10.0664 4.6477 -0.0026 12 7 10.4227 2.4554 -0.0016 13 6 11.8752 2.6474 -0.0023 14 1 12.1252 3.5299 0.5865 15 6 12.5420 1.4371 0.5989 16 8 11.8708 0.5061 0.9888 17 8 13.8804 1.3899 0.7026 18 6 14.4135 0.2777 1.2496 19 1 13.7692 -0.5232 1.5810 20 6 15.7894 0.1633 1.3873 21 7 16.5735 1.1383 0.9844 22 14 16.5275 -1.3762 2.1453 23 1 16.1488 -2.5591 1.3313 24 1 18.0069 -1.2515 2.1780 25 1 16.0136 -1.5422 3.5286 26 6 12.3638 2.8379 -1.4395 27 1 12.1137 1.9553 -2.0282 28 6 13.8805 3.0389 -1.4401 29 8 11.7313 3.9856 -2.0095 30 6 7.6024 2.0403 -0.0063 31 6 6.2367 1.8641 -0.0003 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 1.6766 1.9565 0.8899 38 1 1.6766 1.9563 -0.8900 39 1 3.9330 0.9288 -0.8907 40 1 3.9337 0.9287 0.8892 41 1 5.2611 5.1079 -0.0028 42 1 7.6960 5.4366 -0.0043 43 1 10.0521 1.5590 -0.0016 44 1 17.5354 1.0586 1.0810 45 1 14.3633 2.1638 -1.0052 46 1 14.1302 3.9217 -0.8514 47 1 14.2287 3.1742 -2.4642 48 1 10.7666 3.9278 -2.0414 49 1 8.2584 1.1824 -0.0099 50 1 5.8217 0.8670 0.0005 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071921341.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:42 Heat of formation + Delta-G solvation = -207.020924 kcal Electronic energy + Delta-G solvation = -32503.873381 eV Core-core repulsion = 27881.929984 eV Total energy + Delta-G solvation = -4621.943397 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.00656 -41.27848 -40.53415 -38.71968 -37.97648 -37.46191 -35.99449 -35.47638 -34.35123 -32.94350 -32.08319 -31.46689 -30.07816 -28.56375 -27.20788 -25.28968 -24.48836 -23.52512 -23.20098 -21.98255 -21.76744 -21.51422 -19.96548 -19.74675 -19.09693 -18.85259 -18.04731 -17.65330 -17.37644 -16.78937 -16.67449 -16.59361 -16.19193 -16.12254 -15.83938 -15.64892 -15.31698 -14.92997 -14.84478 -14.58709 -14.41283 -14.31042 -13.99928 -13.83272 -13.72703 -13.59838 -13.22550 -13.16239 -13.03487 -12.95076 -12.86108 -12.61864 -12.29198 -12.18558 -12.17665 -12.01668 -11.89362 -11.87431 -11.75960 -11.45460 -11.43513 -11.21776 -11.18949 -10.68812 -10.28106 -10.15780 -9.34381 -8.53654 -6.33408 -0.21293 0.26896 1.19129 1.33881 1.49062 1.54905 1.60699 1.74039 2.07082 2.14707 2.54356 2.75686 2.97491 3.31230 3.52774 3.63417 3.64278 3.78791 3.80939 3.91998 3.94699 4.09530 4.16640 4.23870 4.33090 4.34453 4.35261 4.41818 4.44075 4.56156 4.62457 4.86091 4.88216 4.90209 4.91570 4.97358 4.98711 5.07575 5.08112 5.16314 5.17779 5.25472 5.29884 5.32141 5.43652 5.52157 5.58515 5.80396 6.28083 6.30925 6.50805 6.54032 6.90168 6.98750 7.64888 8.64543 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.001859 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.818821 B =15057.649561 C =16772.985041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.047 3.953 5 O -0.320 6.320 6 C 0.158 3.842 7 C -0.164 4.164 8 C -0.020 4.020 9 C -0.190 4.190 10 C 0.561 3.439 11 O -0.556 6.556 12 N -0.706 5.706 13 C 0.142 3.858 14 H 0.108 0.892 15 C 0.395 3.605 16 O -0.566 6.566 17 O -0.214 6.214 18 C -0.425 4.425 19 H 0.087 0.913 20 C 0.004 3.996 21 N -0.889 5.889 22 Si 1.014 2.986 23 H -0.260 1.260 24 H -0.264 1.264 25 H -0.265 1.265 26 C 0.113 3.887 27 H 0.071 0.929 28 C -0.148 4.148 29 O -0.551 6.551 30 C -0.040 4.040 31 C -0.214 4.214 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.415 0.585 44 H 0.279 0.721 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.376 0.624 49 H 0.141 0.859 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.656 -1.126 -4.419 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.153 4.153 4 C -0.027 4.027 5 O -0.233 6.233 6 C 0.111 3.889 7 C -0.182 4.182 8 C -0.039 4.039 9 C -0.193 4.193 10 C 0.351 3.649 11 O -0.436 6.436 12 N -0.362 5.362 13 C 0.034 3.966 14 H 0.126 0.874 15 C 0.242 3.758 16 O -0.464 6.464 17 O -0.121 6.121 18 C -0.500 4.500 19 H 0.104 0.896 20 C -0.198 4.198 21 N -0.525 5.525 22 Si 0.833 3.167 23 H -0.185 1.185 24 H -0.188 1.188 25 H -0.190 1.190 26 C 0.053 3.947 27 H 0.088 0.912 28 C -0.206 4.206 29 O -0.358 6.358 30 C -0.059 4.059 31 C -0.233 4.233 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.254 0.746 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.225 0.775 49 H 0.158 0.842 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -26.787 -0.183 -4.385 27.144 hybrid contribution -0.010 -1.293 0.657 1.451 sum -26.797 -1.476 -3.728 27.096 Atomic orbital electron populations 1.21762 0.94980 1.02241 1.02104 1.21436 0.96611 0.94793 1.02965 1.21574 0.91532 0.98572 1.03633 1.23192 0.96243 0.80480 1.02790 1.86025 1.18390 1.31463 1.87446 1.19413 0.82818 0.94314 0.92362 1.20564 0.94583 0.95809 1.07253 1.21128 0.91918 0.98860 0.91954 1.19624 0.90807 0.95502 1.13382 1.18631 0.87238 0.83727 0.75289 1.90833 1.77870 1.24082 1.50832 1.45708 1.04129 1.10937 1.75390 1.20919 0.81309 0.94851 0.99498 0.87428 1.23445 0.83050 0.88757 0.80534 1.90513 1.65331 1.39601 1.50956 1.83965 1.19580 1.41570 1.66939 1.21442 0.91423 0.95091 1.42042 0.89575 1.26428 0.94657 1.02315 0.96386 1.70057 1.05476 1.33368 1.43635 0.84728 0.77449 0.75843 0.78670 1.18469 1.18754 1.18960 1.21920 0.94556 0.89144 0.89107 0.91153 1.21892 0.91793 1.03981 1.02908 1.86557 1.24570 1.41574 1.83108 1.21306 0.95612 0.95866 0.93100 1.21401 0.93265 0.99515 1.09101 0.92606 0.92501 0.92011 0.91103 0.91256 0.91057 0.90903 0.90554 0.90816 0.82783 0.83822 0.74572 0.91108 0.89758 0.92752 0.90619 0.77531 0.84173 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.27 16 2 C -0.12 -0.79 5.93 30.60 0.18 -0.61 16 3 C -0.12 -0.99 5.58 30.59 0.17 -0.82 16 4 C 0.05 0.49 4.73 71.98 0.34 0.84 16 5 O -0.32 -5.18 10.12 -90.38 -0.92 -6.10 16 6 C 0.16 2.82 6.70 22.63 0.15 2.97 16 7 C -0.16 -3.01 9.97 22.32 0.22 -2.79 16 8 C -0.02 -0.43 9.58 22.50 0.22 -0.21 16 9 C -0.19 -4.63 5.88 -20.08 -0.12 -4.75 16 10 C 0.56 17.26 6.36 86.72 0.55 17.81 16 11 O -0.56 -20.42 14.38 12.67 0.18 -20.24 16 12 N -0.71 -22.70 4.81 -449.22 -2.16 -24.86 16 13 C 0.14 5.54 2.49 44.24 0.11 5.65 16 14 H 0.11 4.56 7.58 -2.39 -0.02 4.54 16 15 C 0.40 18.85 7.20 71.23 0.51 19.37 16 16 O -0.57 -28.19 15.07 20.77 0.31 -27.87 16 17 O -0.21 -11.70 6.67 14.85 0.10 -11.60 16 18 C -0.42 -24.15 9.64 67.94 0.66 -23.50 16 19 H 0.09 4.94 6.86 -2.91 -0.02 4.92 16 20 C 0.00 0.23 5.49 84.87 0.47 0.70 16 21 N -0.89 -49.77 13.67 21.62 0.30 -49.47 16 22 Si 1.01 41.40 29.55 68.60 2.03 43.43 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 C 0.11 4.13 3.41 30.59 0.10 4.23 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 C -0.15 -5.92 9.04 71.98 0.65 -5.27 16 29 O -0.55 -19.47 12.46 -132.33 -1.65 -21.12 16 30 C -0.04 -0.81 9.53 22.51 0.21 -0.59 16 31 C -0.21 -3.59 9.01 22.32 0.20 -3.38 16 32 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.65 7.65 -2.39 -0.02 0.63 16 40 H 0.07 0.67 7.65 -2.39 -0.02 0.65 16 41 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.14 3.11 7.64 -2.91 -0.02 3.09 16 43 H 0.41 12.20 5.81 -92.71 -0.54 11.66 16 44 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.08 3.95 5.32 -2.39 -0.01 3.94 16 46 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 48 H 0.38 11.72 6.54 -74.06 -0.48 11.24 16 49 H 0.14 2.54 6.39 -2.91 -0.02 2.52 16 50 H 0.16 1.81 6.28 -2.91 -0.02 1.79 16 Total: -1.00 -69.55 414.04 3.50 -66.05 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.04 Total: 42.42 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.35 Total: 9.37 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.86 Total: -74.33 kcal Atomic # 8 Polarization: -84.96 SS G_CDS: -1.97 Total: -86.93 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -69.55 3.50 -66.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921341.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.975 kcal (2) G-P(sol) polarization free energy of solvation -69.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds