Wall clock time and date at job start Tue Mar 31 2020 07:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37095 * 120.00226 * 2 1 4 4 H 1.08005 * 120.00263 * 188.24638 * 3 2 1 5 5 C 1.38954 * 119.99684 * 8.24800 * 3 2 1 6 6 N 1.31403 * 120.00133 * 9.08903 * 5 3 2 7 7 Si 1.86804 * 119.99721 * 189.08990 * 5 3 2 8 8 H 1.48493 * 109.47305 * 90.00144 * 7 5 3 9 9 H 1.48501 * 109.46935 * 210.00167 * 7 5 3 10 10 H 1.48504 * 109.47192 * 329.99696 * 7 5 3 11 11 C 1.34780 * 119.99761 * 180.02562 * 2 1 3 12 12 O 1.21300 * 119.99639 * 183.35899 * 11 2 1 13 13 C 1.50701 * 120.00496 * 3.35623 * 11 2 1 14 14 H 1.09007 * 110.42815 * 305.72727 * 13 11 2 15 15 C 1.54627 * 110.48995 * 183.04348 * 13 11 2 16 16 C 1.54475 * 101.76172 * 216.52223 * 15 13 11 17 17 N 1.46759 * 105.47664 * 25.41742 * 16 15 13 18 18 C 1.39961 * 124.35005 * 162.96005 * 17 16 15 19 19 C 1.38865 * 120.07171 * 269.76988 * 18 17 16 20 20 C 1.38116 * 119.93614 * 179.72555 * 19 18 17 21 21 C 1.38299 * 120.08620 * 0.57364 * 20 19 18 22 22 C 1.38257 * 120.14840 * 359.70385 * 21 20 19 23 23 C 1.38216 * 120.06020 * 359.97438 * 22 21 20 24 24 Br 1.89094 * 120.04182 * 180.02562 * 23 22 21 25 25 C 1.34423 * 111.29814 * 342.98148 * 17 16 15 26 26 O 1.21288 * 124.93781 * 180.37279 * 25 17 16 27 27 H 1.08999 * 109.47006 * 174.07838 * 1 2 3 28 28 H 1.08996 * 109.47492 * 54.07194 * 1 2 3 29 29 H 1.09003 * 109.46679 * 294.06847 * 1 2 3 30 30 H 0.97002 * 120.00385 * 180.02562 * 6 5 3 31 31 H 1.08997 * 110.96403 * 334.64448 * 15 13 11 32 32 H 1.09002 * 110.96690 * 98.39964 * 15 13 11 33 33 H 1.09000 * 110.24466 * 266.41192 * 16 15 13 34 34 H 1.09001 * 110.23881 * 144.41729 * 16 15 13 35 35 H 1.08003 * 120.03177 * 0.02562 * 19 18 17 36 36 H 1.07995 * 119.95699 * 180.31993 * 20 19 18 37 37 H 1.08001 * 119.92676 * 179.72559 * 21 20 19 38 38 H 1.07997 * 119.97244 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2222 1.1921 -0.1342 5 6 1.4665 2.3844 0.1726 6 7 0.1973 2.3728 0.5128 7 14 2.3513 4.0103 -0.0788 8 1 2.2235 4.4291 -1.4977 9 1 1.7462 5.0440 0.7989 10 1 3.7877 3.8501 0.2626 11 6 2.1389 -1.1673 -0.0005 12 8 3.3503 -1.1682 0.0610 13 6 1.3874 -2.4712 -0.0775 14 1 0.6394 -2.5266 0.7136 15 6 2.3651 -3.6657 0.0136 16 6 1.7170 -4.6779 -0.9567 17 7 0.9408 -3.8699 -1.9046 18 6 0.4741 -4.3333 -3.1401 19 6 1.2587 -4.1932 -4.2772 20 6 0.7978 -4.6565 -5.4940 21 6 -0.4487 -5.2489 -5.5832 22 6 -1.2352 -5.3850 -4.4544 23 6 -0.7773 -4.9295 -3.2324 24 35 -1.8532 -5.1166 -1.6887 25 6 0.7360 -2.6276 -1.4339 26 8 0.1193 -1.7583 -2.0128 27 1 -0.3633 -1.0222 -0.1060 28 1 -0.3634 0.6030 -0.8321 29 1 -0.3633 0.4191 0.9384 30 1 -0.2803 3.2085 0.6329 31 1 3.3608 -3.3814 -0.3268 32 1 2.4002 -4.0645 1.0275 33 1 1.0595 -5.3551 -0.4115 34 1 2.4871 -5.2414 -1.4835 35 1 2.2304 -3.7267 -4.2094 36 1 1.4099 -4.5524 -6.3776 37 1 -0.8084 -5.6063 -6.5368 38 1 -2.2080 -5.8484 -4.5272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072072186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:15 Heat of formation + Delta-G solvation = -5.455496 kcal Electronic energy + Delta-G solvation = -25176.775659 eV Core-core repulsion = 21452.762174 eV Total energy + Delta-G solvation = -3724.013485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 366.037 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92744 -39.15251 -37.71547 -36.22763 -34.61474 -33.02636 -32.34542 -31.47570 -29.88393 -28.80095 -27.74630 -26.10948 -24.30566 -23.27994 -22.64326 -21.96036 -20.12957 -18.50167 -17.51562 -16.93319 -16.70937 -16.24717 -15.98530 -15.63848 -14.75113 -14.67049 -14.13351 -14.00796 -13.77947 -13.68124 -13.47702 -13.17864 -12.80968 -12.53546 -12.31723 -11.88218 -11.74548 -11.54639 -11.50390 -11.28307 -11.01332 -10.94377 -10.73979 -10.65099 -10.32574 -10.30635 -10.07519 -9.51388 -9.07675 -8.98333 -8.84959 -8.80354 -8.40931 -7.74614 -6.18103 -3.75772 0.82097 0.99729 1.49983 2.79552 2.94810 3.20467 3.28085 3.32680 3.33515 3.87438 4.15503 4.56989 4.65547 4.73602 4.77383 4.89832 4.95260 5.09847 5.14906 5.27532 5.29070 5.34231 5.50127 5.58792 5.71693 5.88218 5.98492 6.08659 6.11853 6.13551 6.37239 6.44426 6.64622 6.86095 7.11542 7.32471 7.54921 7.63890 8.11505 8.44443 8.53309 9.21838 9.50530 10.01554 10.74780 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.003402 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.843425 B = 8228.025078 C = 8389.730907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.424 5.424 3 C -0.301 4.301 4 H 0.104 0.896 5 C 0.029 3.971 6 N -0.878 5.878 7 Si 0.931 3.069 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.443 3.557 12 O -0.595 6.595 13 C -0.130 4.130 14 H 0.119 0.881 15 C -0.112 4.112 16 C 0.108 3.892 17 N -0.590 5.590 18 C 0.182 3.818 19 C -0.105 4.105 20 C -0.098 4.098 21 C -0.114 4.114 22 C -0.088 4.088 23 C -0.087 4.087 24 Br -0.040 7.040 25 C 0.537 3.463 26 O -0.491 6.491 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.266 0.734 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 -20.112 -7.871 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.139 5.139 3 C -0.429 4.429 4 H 0.122 0.878 5 C -0.174 4.174 6 N -0.519 5.519 7 Si 0.758 3.242 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.229 3.771 12 O -0.483 6.483 13 C -0.154 4.154 14 H 0.137 0.863 15 C -0.150 4.150 16 C -0.013 4.013 17 N -0.324 5.324 18 C 0.090 3.910 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.133 4.133 22 C -0.109 4.109 23 C -0.168 4.168 24 Br 0.045 6.955 25 C 0.325 3.675 26 O -0.362 6.362 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.206 -19.490 -7.545 21.538 hybrid contribution 0.255 0.845 -0.488 1.008 sum -4.951 -18.645 -8.032 20.897 Atomic orbital electron populations 1.21805 0.79718 0.97288 1.03592 1.43617 1.06421 1.04520 1.59373 1.19808 0.94056 0.82141 1.46861 0.87844 1.25346 0.95903 0.99839 0.96320 1.70136 1.08930 1.27394 1.45395 0.85851 0.79442 0.80715 0.78234 1.20345 1.20866 1.19336 1.18986 0.87547 0.83666 0.86902 1.90488 1.13498 1.86191 1.58075 1.21941 0.99601 0.97631 0.96266 0.86288 1.22538 1.00224 0.92363 0.99895 1.22225 0.94514 0.94104 0.90466 1.45707 1.56464 1.13743 1.16475 1.17164 0.91433 0.96511 0.85847 1.21469 1.00494 0.98985 0.91511 1.21206 0.96099 0.96983 0.97378 1.21208 0.94353 0.99444 0.98279 1.21040 1.00236 0.99019 0.90569 1.22333 0.95314 1.05331 0.93808 1.96721 1.66678 1.96677 1.35379 1.20769 0.78902 0.80583 0.87282 1.90793 1.39863 1.42646 1.62900 0.95313 0.92214 0.90832 0.92317 0.87905 0.89030 0.90860 0.90332 0.84670 0.84873 0.84877 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.03 7.28 59.85 0.44 3.46 16 2 N -0.42 -11.60 3.01 -122.19 -0.37 -11.97 16 3 C -0.30 -8.75 9.53 -14.93 -0.14 -8.90 16 4 H 0.10 3.11 7.22 -52.48 -0.38 2.74 16 5 C 0.03 0.79 5.36 -17.47 -0.09 0.70 16 6 N -0.88 -24.23 9.73 55.50 0.54 -23.69 16 7 Si 0.93 21.49 29.56 -169.99 -5.03 16.47 16 8 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.44 11.12 6.93 -10.98 -0.08 11.05 16 12 O -0.60 -16.39 15.08 5.54 0.08 -16.31 16 13 C -0.13 -2.47 2.36 -91.79 -0.22 -2.69 16 14 H 0.12 2.08 7.48 -51.92 -0.39 1.69 16 15 C -0.11 -1.64 6.50 -25.10 -0.16 -1.80 16 16 C 0.11 1.32 7.28 -3.13 -0.02 1.30 16 17 N -0.59 -9.10 2.21 -112.25 -0.25 -9.35 16 18 C 0.18 2.60 5.37 -83.66 -0.45 2.15 16 19 C -0.10 -1.31 9.97 -39.39 -0.39 -1.70 16 20 C -0.10 -0.95 10.04 -39.60 -0.40 -1.35 16 21 C -0.11 -1.02 10.04 -39.55 -0.40 -1.41 16 22 C -0.09 -0.91 9.78 -39.58 -0.39 -1.30 16 23 C -0.09 -1.12 6.24 -39.34 -0.25 -1.37 16 24 Br -0.04 -0.51 33.08 -68.01 -2.25 -2.76 16 25 C 0.54 10.44 6.93 -10.86 -0.08 10.37 16 26 O -0.49 -11.41 14.78 5.55 0.08 -11.32 16 27 H 0.03 0.65 4.34 -51.93 -0.23 0.43 16 28 H 0.06 1.65 7.50 -51.93 -0.39 1.26 16 29 H 0.07 1.92 6.70 -51.93 -0.35 1.58 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.10 1.71 6.96 -51.93 -0.36 1.34 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -34.29 337.54 -8.91 -43.20 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.19 Total: 2.15 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -2.62 Total: 8.50 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.08 Total: -45.01 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: 0.17 Total: -27.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.25 Total: -2.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.29 -8.91 -43.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.743 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds