Wall clock time and date at job start Tue Mar 31 2020 07:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37095 * 120.00226 * 2 1 4 4 H 1.08005 * 120.00263 * 188.24638 * 3 2 1 5 5 C 1.38954 * 119.99684 * 8.24800 * 3 2 1 6 6 N 1.31403 * 120.00133 * 9.08903 * 5 3 2 7 7 Si 1.86804 * 119.99721 * 189.08990 * 5 3 2 8 8 H 1.48493 * 109.47305 * 90.00144 * 7 5 3 9 9 H 1.48501 * 109.46935 * 210.00167 * 7 5 3 10 10 H 1.48504 * 109.47192 * 329.99696 * 7 5 3 11 11 C 1.34780 * 119.99761 * 180.02562 * 2 1 3 12 12 O 1.21300 * 119.99639 * 183.35899 * 11 2 1 13 13 C 1.50701 * 120.00496 * 3.35623 * 11 2 1 14 14 H 1.09007 * 110.42815 * 305.72727 * 13 11 2 15 15 C 1.54627 * 110.48995 * 183.04348 * 13 11 2 16 16 C 1.54475 * 101.76172 * 216.52223 * 15 13 11 17 17 N 1.46759 * 105.47664 * 25.41742 * 16 15 13 18 18 C 1.39961 * 124.35005 * 162.96005 * 17 16 15 19 19 C 1.38865 * 120.07171 * 269.76988 * 18 17 16 20 20 C 1.38116 * 119.93614 * 179.72555 * 19 18 17 21 21 C 1.38299 * 120.08620 * 0.57364 * 20 19 18 22 22 C 1.38257 * 120.14840 * 359.70385 * 21 20 19 23 23 C 1.38216 * 120.06020 * 359.97438 * 22 21 20 24 24 Br 1.89094 * 120.04182 * 180.02562 * 23 22 21 25 25 C 1.34423 * 111.29814 * 342.98148 * 17 16 15 26 26 O 1.21288 * 124.93781 * 180.37279 * 25 17 16 27 27 H 1.08999 * 109.47006 * 174.07838 * 1 2 3 28 28 H 1.08996 * 109.47492 * 54.07194 * 1 2 3 29 29 H 1.09003 * 109.46679 * 294.06847 * 1 2 3 30 30 H 0.97002 * 120.00385 * 180.02562 * 6 5 3 31 31 H 1.08997 * 110.96403 * 334.64448 * 15 13 11 32 32 H 1.09002 * 110.96690 * 98.39964 * 15 13 11 33 33 H 1.09000 * 110.24466 * 266.41192 * 16 15 13 34 34 H 1.09001 * 110.23881 * 144.41729 * 16 15 13 35 35 H 1.08003 * 120.03177 * 0.02562 * 19 18 17 36 36 H 1.07995 * 119.95699 * 180.31993 * 20 19 18 37 37 H 1.08001 * 119.92676 * 179.72559 * 21 20 19 38 38 H 1.07997 * 119.97244 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2222 1.1921 -0.1342 5 6 1.4665 2.3844 0.1726 6 7 0.1973 2.3728 0.5128 7 14 2.3513 4.0103 -0.0788 8 1 2.2235 4.4291 -1.4977 9 1 1.7462 5.0440 0.7989 10 1 3.7877 3.8501 0.2626 11 6 2.1389 -1.1673 -0.0005 12 8 3.3503 -1.1682 0.0610 13 6 1.3874 -2.4712 -0.0775 14 1 0.6394 -2.5266 0.7136 15 6 2.3651 -3.6657 0.0136 16 6 1.7170 -4.6779 -0.9567 17 7 0.9408 -3.8699 -1.9046 18 6 0.4741 -4.3333 -3.1401 19 6 1.2587 -4.1932 -4.2772 20 6 0.7978 -4.6565 -5.4940 21 6 -0.4487 -5.2489 -5.5832 22 6 -1.2352 -5.3850 -4.4544 23 6 -0.7773 -4.9295 -3.2324 24 35 -1.8532 -5.1166 -1.6887 25 6 0.7360 -2.6276 -1.4339 26 8 0.1193 -1.7583 -2.0128 27 1 -0.3633 -1.0222 -0.1060 28 1 -0.3634 0.6030 -0.8321 29 1 -0.3633 0.4191 0.9384 30 1 -0.2803 3.2085 0.6329 31 1 3.3608 -3.3814 -0.3268 32 1 2.4002 -4.0645 1.0275 33 1 1.0595 -5.3551 -0.4115 34 1 2.4871 -5.2414 -1.4835 35 1 2.2304 -3.7267 -4.2094 36 1 1.4099 -4.5524 -6.3776 37 1 -0.8084 -5.6063 -6.5368 38 1 -2.2080 -5.8484 -4.5272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072072186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:11 Heat of formation + Delta-G solvation = -26.246748 kcal Electronic energy + Delta-G solvation = -25177.677236 eV Core-core repulsion = 21452.762174 eV Total energy + Delta-G solvation = -3724.915062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 366.037 amu Computer time = 5.30 seconds Orbital eigenvalues (eV) -42.28198 -40.41844 -39.36056 -37.69969 -36.62908 -34.26877 -33.54574 -33.23251 -30.86305 -29.89260 -29.10407 -28.11260 -26.29860 -24.32376 -23.51856 -23.40034 -21.38085 -20.23111 -18.95813 -18.67803 -18.36164 -17.67200 -17.14154 -16.76903 -16.54170 -15.94373 -15.86138 -15.46627 -15.15596 -14.91353 -14.53807 -14.48876 -14.22063 -14.09782 -13.79316 -13.55688 -13.39092 -12.94714 -12.80995 -12.71830 -12.60364 -12.38601 -12.23940 -12.09071 -12.00245 -11.88004 -11.28680 -11.09265 -11.00437 -10.48527 -10.03757 -9.98233 -9.87283 -9.71700 -8.27591 -5.95930 -0.05102 0.14843 0.57269 1.24971 1.36191 1.39933 1.51447 1.70460 2.04539 2.24319 2.50177 2.98925 3.06687 3.46093 3.46983 3.73821 3.91763 3.93669 4.02785 4.21695 4.25981 4.27813 4.32186 4.47733 4.59227 4.69702 4.75502 4.97640 5.10959 5.18263 5.19954 5.24059 5.34158 5.39479 5.44161 5.52350 5.78251 5.86740 5.98279 6.41326 7.02644 7.09872 7.43625 7.94710 8.64322 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.003402 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.843425 B = 8228.025078 C = 8389.730907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.144 3.856 2 N -0.446 5.446 3 C -0.345 4.345 4 H 0.081 0.919 5 C -0.007 4.007 6 N -0.895 5.895 7 Si 0.997 3.003 8 H -0.272 1.272 9 H -0.266 1.266 10 H -0.269 1.269 11 C 0.438 3.562 12 O -0.626 6.626 13 C -0.130 4.130 14 H 0.136 0.864 15 C -0.103 4.103 16 C 0.111 3.889 17 N -0.578 5.578 18 C 0.148 3.852 19 C -0.123 4.123 20 C -0.092 4.092 21 C -0.101 4.101 22 C -0.089 4.089 23 C -0.103 4.103 24 Br -0.047 7.047 25 C 0.532 3.468 26 O -0.540 6.540 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.273 0.727 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 -22.015 -9.181 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.162 5.162 3 C -0.472 4.472 4 H 0.099 0.901 5 C -0.208 4.208 6 N -0.534 5.534 7 Si 0.820 3.180 8 H -0.198 1.198 9 H -0.191 1.191 10 H -0.194 1.194 11 C 0.226 3.774 12 O -0.515 6.515 13 C -0.155 4.155 14 H 0.154 0.846 15 C -0.141 4.141 16 C -0.010 4.010 17 N -0.309 5.309 18 C 0.056 3.944 19 C -0.143 4.143 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.109 4.109 23 C -0.184 4.184 24 Br 0.039 6.961 25 C 0.320 3.680 26 O -0.416 6.416 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.180 0.820 37 H 0.190 0.810 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.702 -21.463 -8.851 23.906 hybrid contribution 0.420 1.316 -0.169 1.392 sum -5.281 -20.147 -9.020 22.697 Atomic orbital electron populations 1.21487 0.78966 0.97938 1.01471 1.43861 1.06984 1.04969 1.60366 1.19815 0.93568 0.83984 1.49870 0.90121 1.26195 0.96750 1.02712 0.95172 1.70223 1.09787 1.28588 1.44801 0.84884 0.78224 0.76429 0.78477 1.19779 1.19099 1.19353 1.19972 0.87628 0.85106 0.84677 1.90450 1.15111 1.87221 1.58691 1.21949 1.00629 0.95702 0.97199 0.84612 1.22576 0.98004 0.90988 1.02532 1.22460 0.95311 0.93350 0.89833 1.45622 1.55384 1.12606 1.17262 1.17419 0.92774 0.98628 0.85559 1.21571 1.00422 0.99928 0.92355 1.21578 0.96759 0.95603 0.97126 1.21681 0.93378 0.97521 0.99340 1.21414 1.01275 0.98270 0.89953 1.22455 0.94903 1.06301 0.94704 1.96701 1.66701 1.96689 1.36035 1.20747 0.78592 0.81514 0.87125 1.90758 1.42305 1.44499 1.64069 0.93002 0.95165 0.92032 0.91716 0.90055 0.85769 0.88161 0.87695 0.85548 0.81954 0.80995 0.82505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.63 7.28 127.77 0.93 8.56 16 2 N -0.45 -25.43 3.01 -658.87 -1.98 -27.41 16 3 C -0.34 -20.96 9.53 84.04 0.80 -20.16 16 4 H 0.08 5.14 7.22 -2.91 -0.02 5.12 16 5 C -0.01 -0.40 5.36 84.93 0.46 0.06 16 6 N -0.89 -50.38 9.73 21.66 0.21 -50.17 16 7 Si 1.00 44.74 29.56 68.60 2.03 46.77 16 8 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 C 0.44 22.76 6.93 87.66 0.61 23.37 16 12 O -0.63 -35.78 15.08 -3.09 -0.05 -35.83 16 13 C -0.13 -4.98 2.36 -11.55 -0.03 -5.01 16 14 H 0.14 4.67 7.48 -2.38 -0.02 4.65 16 15 C -0.10 -2.89 6.50 31.65 0.21 -2.68 16 16 C 0.11 2.47 7.28 86.83 0.63 3.10 16 17 N -0.58 -17.36 2.21 -627.64 -1.38 -18.74 16 18 C 0.15 4.05 5.37 38.16 0.20 4.25 16 19 C -0.12 -2.94 9.97 22.39 0.22 -2.72 16 20 C -0.09 -1.52 10.04 22.26 0.22 -1.30 16 21 C -0.10 -1.40 10.04 22.29 0.22 -1.18 16 22 C -0.09 -1.58 9.78 22.27 0.22 -1.37 16 23 C -0.10 -2.49 6.24 22.43 0.14 -2.35 16 24 Br -0.05 -1.13 33.08 -20.37 -0.67 -1.80 16 25 C 0.53 20.91 6.93 87.89 0.61 21.52 16 26 O -0.54 -25.93 14.78 -3.05 -0.05 -25.98 16 27 H 0.05 2.44 4.34 -2.39 -0.01 2.43 16 28 H 0.03 1.73 7.50 -2.39 -0.02 1.71 16 29 H 0.06 3.34 6.70 -2.39 -0.02 3.32 16 30 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.08 2.68 6.96 -2.39 -0.02 2.66 16 32 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -79.22 337.54 4.65 -74.57 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.10 Total: 14.51 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 5.45 Total: 24.08 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -3.15 Total: -96.33 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: -0.09 Total: -61.80 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 35 Polarization: -1.13 SS G_CDS: -0.67 Total: -1.80 kcal Total: -79.22 4.65 -74.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.322 kcal (2) G-P(sol) polarization free energy of solvation -79.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.30 seconds