Wall clock time and date at job start Tue Mar 31 2020 07:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37101 * 120.00248 * 2 1 4 4 H 1.07997 * 120.00376 * 201.51592 * 3 2 1 5 5 C 1.38956 * 119.99553 * 21.51865 * 3 2 1 6 6 N 1.31407 * 119.99993 * 9.86367 * 5 3 2 7 7 Si 1.86796 * 119.99815 * 189.86030 * 5 3 2 8 8 H 1.48504 * 109.46973 * 90.00399 * 7 5 3 9 9 H 1.48500 * 109.47118 * 209.99609 * 7 5 3 10 10 H 1.48493 * 109.47381 * 330.00269 * 7 5 3 11 11 C 1.34781 * 120.00318 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00122 * 180.02562 * 11 2 1 13 13 C 1.50695 * 119.99607 * 359.97438 * 11 2 1 14 14 H 1.09002 * 110.43703 * 57.46772 * 13 11 2 15 15 C 1.54628 * 110.48736 * 180.02562 * 13 11 2 16 16 C 1.54473 * 101.76650 * 143.47955 * 15 13 11 17 17 N 1.46764 * 105.47693 * 334.58485 * 16 15 13 18 18 C 1.39956 * 124.35338 * 197.01502 * 17 16 15 19 19 C 1.38863 * 120.07151 * 89.72574 * 18 17 16 20 20 C 1.38121 * 119.93557 * 179.74739 * 19 18 17 21 21 C 1.38298 * 120.08559 * 0.54735 * 20 19 18 22 22 C 1.38257 * 120.14762 * 359.70455 * 21 20 19 23 23 C 1.38207 * 120.06554 * 0.02562 * 22 21 20 24 24 Br 1.89093 * 120.04807 * 180.02562 * 23 22 21 25 25 C 1.34420 * 111.29595 * 17.01970 * 17 16 15 26 26 O 1.21292 * 124.94150 * 179.63025 * 25 17 16 27 27 H 1.08999 * 109.46886 * 275.28035 * 1 2 3 28 28 H 1.08997 * 109.47197 * 35.28465 * 1 2 3 29 29 H 1.08997 * 109.46654 * 155.28643 * 1 2 3 30 30 H 0.97001 * 119.99878 * 180.02562 * 6 5 3 31 31 H 1.09006 * 110.96507 * 25.36130 * 15 13 11 32 32 H 1.09004 * 110.97152 * 261.60295 * 15 13 11 33 33 H 1.09002 * 110.24882 * 93.58629 * 16 15 13 34 34 H 1.09011 * 110.25007 * 215.58767 * 16 15 13 35 35 H 1.07995 * 120.03422 * 0.02562 * 19 18 17 36 36 H 1.07990 * 119.95344 * 180.27753 * 20 19 18 37 37 H 1.07999 * 119.92372 * 179.71966 * 21 20 19 38 38 H 1.08005 * 119.96619 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1741 1.2199 -0.3430 5 6 1.5284 2.3487 0.4414 6 7 0.3590 2.2820 1.0371 7 14 2.3544 4.0049 0.1881 8 1 1.9346 4.5727 -1.1183 9 1 1.9561 4.9289 1.2803 10 1 3.8289 3.8298 0.2009 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3855 -2.4722 -0.0005 14 1 0.7191 -2.5270 -0.8614 15 6 2.3693 -3.6652 -0.0005 16 6 1.6321 -4.6815 0.8994 17 7 0.7666 -3.8776 1.7705 18 6 0.1831 -4.3456 2.9534 19 6 0.8583 -4.2182 4.1601 20 6 0.2775 -4.6763 5.3266 21 6 -0.9702 -5.2719 5.2924 22 6 -1.6432 -5.4053 4.0921 23 6 -1.0704 -4.9440 2.9220 24 35 -1.9917 -5.1261 1.2808 25 6 0.6063 -2.6340 1.2861 26 8 -0.0647 -1.7673 1.8054 27 1 -0.3633 0.0946 1.0233 28 1 -0.3633 0.8388 -0.5936 29 1 -0.3632 -0.9335 -0.4296 30 1 -0.0755 3.0928 1.3449 31 1 3.3270 -3.3809 0.4355 32 1 2.5028 -4.0607 -1.0074 33 1 1.0314 -5.3577 0.2912 34 1 2.3485 -5.2458 1.4966 35 1 1.8345 -3.7572 4.1872 36 1 0.8004 -4.5733 6.2658 37 1 -1.4198 -5.6333 6.2054 38 1 -2.6177 -5.8705 4.0689 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072072187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:18 Heat of formation + Delta-G solvation = -7.972068 kcal Electronic energy + Delta-G solvation = -25268.505640 eV Core-core repulsion = 21544.383028 eV Total energy + Delta-G solvation = -3724.122612 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 366.037 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87214 -39.11389 -37.67556 -36.18406 -34.54049 -32.99643 -32.30992 -31.47028 -29.84858 -28.76490 -27.70548 -26.06789 -24.31693 -23.24832 -22.60419 -21.92393 -20.09870 -18.48565 -17.48180 -16.83692 -16.69522 -16.22816 -15.90087 -15.62110 -14.80370 -14.64567 -14.18503 -13.96228 -13.77538 -13.65492 -13.39302 -13.13767 -12.70005 -12.45224 -12.28258 -11.88490 -11.75101 -11.49336 -11.37173 -11.31412 -11.00359 -10.97729 -10.79494 -10.68154 -10.30312 -10.29446 -10.11924 -9.45920 -9.05213 -8.87812 -8.80208 -8.73365 -8.39431 -7.55797 -6.19527 -3.79002 0.86257 1.03827 1.52986 2.85268 3.00309 3.21370 3.29066 3.34892 3.36782 3.91026 4.17627 4.60655 4.67276 4.77116 4.78457 4.93360 4.99138 5.13630 5.18584 5.26676 5.30036 5.36897 5.52669 5.61962 5.70914 5.91885 5.98093 6.11763 6.13188 6.17676 6.41147 6.44892 6.60758 6.90504 7.12769 7.17208 7.62325 7.76364 8.18481 8.54253 8.56747 9.23851 9.50991 10.03864 10.80428 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.003476 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.538778 B = 8054.440271 C = 8181.328534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.424 5.424 3 C -0.310 4.310 4 H 0.100 0.900 5 C 0.032 3.968 6 N -0.870 5.870 7 Si 0.927 3.073 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.448 3.552 12 O -0.591 6.591 13 C -0.132 4.132 14 H 0.118 0.882 15 C -0.112 4.112 16 C 0.108 3.892 17 N -0.591 5.591 18 C 0.184 3.816 19 C -0.104 4.104 20 C -0.097 4.097 21 C -0.114 4.114 22 C -0.088 4.088 23 C -0.087 4.087 24 Br -0.042 7.042 25 C 0.535 3.465 26 O -0.482 6.482 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.016 0.984 30 H 0.267 0.733 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 -19.943 4.520 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.140 5.140 3 C -0.438 4.438 4 H 0.118 0.882 5 C -0.172 4.172 6 N -0.508 5.508 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.234 3.766 12 O -0.478 6.478 13 C -0.156 4.156 14 H 0.136 0.864 15 C -0.150 4.150 16 C -0.013 4.013 17 N -0.325 5.325 18 C 0.092 3.908 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.109 4.109 23 C -0.168 4.168 24 Br 0.044 6.956 25 C 0.323 3.677 26 O -0.353 6.353 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.192 -19.327 4.286 20.742 hybrid contribution 0.233 0.842 0.311 0.927 sum -5.959 -18.485 4.597 19.959 Atomic orbital electron populations 1.21741 0.80205 0.96805 1.03815 1.43548 1.06119 1.04446 1.59893 1.19688 0.98989 0.83642 1.41480 0.88242 1.25402 0.96372 1.00047 0.95404 1.70079 1.15571 1.28947 1.36251 0.85916 0.79648 0.81222 0.77818 1.20350 1.20925 1.19351 1.19093 0.87541 0.83864 0.86053 1.90491 1.13371 1.86339 1.57578 1.21933 0.98695 0.97641 0.97371 0.86418 1.22528 0.99422 0.92395 1.00634 1.22212 0.92600 0.94151 0.92350 1.45731 1.51056 1.13745 1.22015 1.17152 0.90854 0.96351 0.86428 1.21473 1.00808 0.98981 0.91194 1.21205 0.95381 0.96958 0.98074 1.21200 0.95090 0.99469 0.97568 1.21029 1.00038 0.99048 0.90758 1.22319 0.96005 1.05323 0.93128 1.96707 1.75154 1.96736 1.27000 1.20806 0.80469 0.80565 0.85885 1.90823 1.39263 1.42226 1.62974 0.89414 0.92615 0.96501 0.92271 0.87992 0.89109 0.90937 0.90396 0.84678 0.84890 0.84904 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.98 6.93 59.85 0.41 3.40 16 2 N -0.42 -11.61 3.01 -122.20 -0.37 -11.97 16 3 C -0.31 -9.02 9.32 -14.93 -0.14 -9.16 16 4 H 0.10 2.97 7.38 -52.49 -0.39 2.59 16 5 C 0.03 0.89 5.17 -17.47 -0.09 0.80 16 6 N -0.87 -24.68 10.45 55.50 0.58 -24.10 16 7 Si 0.93 21.46 29.56 -169.99 -5.03 16.44 16 8 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 C 0.45 11.29 6.99 -10.99 -0.08 11.21 16 12 O -0.59 -16.33 15.17 5.55 0.08 -16.25 16 13 C -0.13 -2.51 2.39 -91.78 -0.22 -2.73 16 14 H 0.12 2.02 7.31 -51.93 -0.38 1.64 16 15 C -0.11 -1.64 6.48 -25.10 -0.16 -1.81 16 16 C 0.11 1.34 7.28 -3.13 -0.02 1.32 16 17 N -0.59 -9.30 2.21 -112.24 -0.25 -9.55 16 18 C 0.18 2.69 5.37 -83.66 -0.45 2.24 16 19 C -0.10 -1.36 9.97 -39.39 -0.39 -1.76 16 20 C -0.10 -0.99 10.04 -39.60 -0.40 -1.39 16 21 C -0.11 -1.06 10.04 -39.55 -0.40 -1.46 16 22 C -0.09 -0.94 9.78 -39.59 -0.39 -1.33 16 23 C -0.09 -1.15 6.24 -39.34 -0.25 -1.39 16 24 Br -0.04 -0.54 33.08 -68.01 -2.25 -2.79 16 25 C 0.53 10.57 7.08 -10.86 -0.08 10.50 16 26 O -0.48 -11.46 13.67 5.55 0.08 -11.38 16 27 H 0.09 2.45 5.66 -51.93 -0.29 2.15 16 28 H 0.06 1.45 7.16 -51.93 -0.37 1.08 16 29 H 0.02 0.37 5.81 -51.93 -0.30 0.07 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.10 1.71 7.00 -51.93 -0.36 1.35 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -34.80 336.86 -8.91 -43.71 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.19 Total: 2.38 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -2.64 Total: 8.44 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.04 Total: -45.62 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: 0.16 Total: -27.63 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -2.25 Total: -2.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.80 -8.91 -43.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.738 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds