Wall clock time and date at job start Tue Mar 31 2020 07:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37101 * 120.00248 * 2 1 4 4 H 1.07997 * 120.00376 * 201.51592 * 3 2 1 5 5 C 1.38956 * 119.99553 * 21.51865 * 3 2 1 6 6 N 1.31407 * 119.99993 * 9.86367 * 5 3 2 7 7 Si 1.86796 * 119.99815 * 189.86030 * 5 3 2 8 8 H 1.48504 * 109.46973 * 90.00399 * 7 5 3 9 9 H 1.48500 * 109.47118 * 209.99609 * 7 5 3 10 10 H 1.48493 * 109.47381 * 330.00269 * 7 5 3 11 11 C 1.34781 * 120.00318 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00122 * 180.02562 * 11 2 1 13 13 C 1.50695 * 119.99607 * 359.97438 * 11 2 1 14 14 H 1.09002 * 110.43703 * 57.46772 * 13 11 2 15 15 C 1.54628 * 110.48736 * 180.02562 * 13 11 2 16 16 C 1.54473 * 101.76650 * 143.47955 * 15 13 11 17 17 N 1.46764 * 105.47693 * 334.58485 * 16 15 13 18 18 C 1.39956 * 124.35338 * 197.01502 * 17 16 15 19 19 C 1.38863 * 120.07151 * 89.72574 * 18 17 16 20 20 C 1.38121 * 119.93557 * 179.74739 * 19 18 17 21 21 C 1.38298 * 120.08559 * 0.54735 * 20 19 18 22 22 C 1.38257 * 120.14762 * 359.70455 * 21 20 19 23 23 C 1.38207 * 120.06554 * 0.02562 * 22 21 20 24 24 Br 1.89093 * 120.04807 * 180.02562 * 23 22 21 25 25 C 1.34420 * 111.29595 * 17.01970 * 17 16 15 26 26 O 1.21292 * 124.94150 * 179.63025 * 25 17 16 27 27 H 1.08999 * 109.46886 * 275.28035 * 1 2 3 28 28 H 1.08997 * 109.47197 * 35.28465 * 1 2 3 29 29 H 1.08997 * 109.46654 * 155.28643 * 1 2 3 30 30 H 0.97001 * 119.99878 * 180.02562 * 6 5 3 31 31 H 1.09006 * 110.96507 * 25.36130 * 15 13 11 32 32 H 1.09004 * 110.97152 * 261.60295 * 15 13 11 33 33 H 1.09002 * 110.24882 * 93.58629 * 16 15 13 34 34 H 1.09011 * 110.25007 * 215.58767 * 16 15 13 35 35 H 1.07995 * 120.03422 * 0.02562 * 19 18 17 36 36 H 1.07990 * 119.95344 * 180.27753 * 20 19 18 37 37 H 1.07999 * 119.92372 * 179.71966 * 21 20 19 38 38 H 1.08005 * 119.96619 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1741 1.2199 -0.3430 5 6 1.5284 2.3487 0.4414 6 7 0.3590 2.2820 1.0371 7 14 2.3544 4.0049 0.1881 8 1 1.9346 4.5727 -1.1183 9 1 1.9561 4.9289 1.2803 10 1 3.8289 3.8298 0.2009 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3855 -2.4722 -0.0005 14 1 0.7191 -2.5270 -0.8614 15 6 2.3693 -3.6652 -0.0005 16 6 1.6321 -4.6815 0.8994 17 7 0.7666 -3.8776 1.7705 18 6 0.1831 -4.3456 2.9534 19 6 0.8583 -4.2182 4.1601 20 6 0.2775 -4.6763 5.3266 21 6 -0.9702 -5.2719 5.2924 22 6 -1.6432 -5.4053 4.0921 23 6 -1.0704 -4.9440 2.9220 24 35 -1.9917 -5.1261 1.2808 25 6 0.6063 -2.6340 1.2861 26 8 -0.0647 -1.7673 1.8054 27 1 -0.3633 0.0946 1.0233 28 1 -0.3633 0.8388 -0.5936 29 1 -0.3632 -0.9335 -0.4296 30 1 -0.0755 3.0928 1.3449 31 1 3.3270 -3.3809 0.4355 32 1 2.5028 -4.0607 -1.0074 33 1 1.0314 -5.3577 0.2912 34 1 2.3485 -5.2458 1.4966 35 1 1.8345 -3.7572 4.1872 36 1 0.8004 -4.5733 6.2658 37 1 -1.4198 -5.6333 6.2054 38 1 -2.6177 -5.8705 4.0689 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072072187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:17 Heat of formation + Delta-G solvation = -29.341798 kcal Electronic energy + Delta-G solvation = -25269.432301 eV Core-core repulsion = 21544.383028 eV Total energy + Delta-G solvation = -3725.049273 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 366.037 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23971 -40.40263 -39.32617 -37.68087 -36.55416 -34.25569 -33.55064 -33.22379 -30.85172 -29.87340 -29.06519 -28.08566 -26.30913 -24.31608 -23.50974 -23.37572 -21.36829 -20.22474 -18.87878 -18.64072 -18.34914 -17.61892 -17.16808 -16.83692 -16.53457 -15.98199 -15.85403 -15.42151 -15.14719 -14.84716 -14.53211 -14.38878 -14.11931 -14.06799 -13.89534 -13.52105 -13.24951 -13.06202 -12.77130 -12.72079 -12.61616 -12.41187 -12.30146 -12.12416 -11.98500 -11.86617 -11.27919 -11.12357 -10.81567 -10.47040 -10.00929 -9.96967 -9.73345 -9.65943 -8.30582 -6.00569 -0.03969 0.15433 0.57888 1.28278 1.37854 1.41840 1.52882 1.73981 2.07646 2.25743 2.50851 2.99091 3.08036 3.46266 3.48358 3.74372 3.94552 3.95025 4.03206 4.18189 4.26425 4.28464 4.32990 4.48143 4.60196 4.69345 4.75837 4.96827 5.06061 5.11401 5.18509 5.24528 5.34584 5.41235 5.48839 5.63658 5.81701 5.93469 6.05013 6.43227 7.09471 7.12047 7.44080 7.96577 8.68602 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.003476 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.538778 B = 8054.440271 C = 8181.328534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.141 3.859 2 N -0.446 5.446 3 C -0.349 4.349 4 H 0.080 0.920 5 C -0.007 4.007 6 N -0.894 5.894 7 Si 0.997 3.003 8 H -0.262 1.262 9 H -0.274 1.274 10 H -0.271 1.271 11 C 0.443 3.557 12 O -0.623 6.623 13 C -0.131 4.131 14 H 0.139 0.861 15 C -0.102 4.102 16 C 0.110 3.890 17 N -0.580 5.580 18 C 0.150 3.850 19 C -0.124 4.124 20 C -0.093 4.093 21 C -0.102 4.102 22 C -0.089 4.089 23 C -0.102 4.102 24 Br -0.046 7.046 25 C 0.529 3.471 26 O -0.534 6.534 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.272 0.728 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -21.844 5.380 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.162 5.162 3 C -0.477 4.477 4 H 0.098 0.902 5 C -0.209 4.209 6 N -0.532 5.532 7 Si 0.820 3.180 8 H -0.187 1.187 9 H -0.199 1.199 10 H -0.196 1.196 11 C 0.231 3.769 12 O -0.511 6.511 13 C -0.155 4.155 14 H 0.157 0.843 15 C -0.140 4.140 16 C -0.010 4.010 17 N -0.311 5.311 18 C 0.058 3.942 19 C -0.144 4.144 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.183 4.183 24 Br 0.040 6.960 25 C 0.317 3.683 26 O -0.409 6.409 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.809 -21.299 5.146 22.945 hybrid contribution 0.436 1.302 0.146 1.381 sum -6.373 -19.996 5.292 21.644 Atomic orbital electron populations 1.21439 0.79360 0.97452 1.01989 1.43800 1.06752 1.04868 1.60782 1.19746 0.98864 0.85468 1.43620 0.90234 1.26285 0.96902 1.03332 0.94357 1.70199 1.16594 1.30121 1.36319 0.84891 0.78276 0.76373 0.78500 1.18725 1.19920 1.19560 1.20067 0.87621 0.85355 0.83868 1.90453 1.15025 1.87370 1.58271 1.21944 0.99656 0.95627 0.98323 0.84318 1.22566 0.97343 0.91030 1.03098 1.22451 0.92895 0.93436 0.92197 1.45652 1.50362 1.12666 1.22453 1.17408 0.92114 0.98406 0.86260 1.21566 1.00883 1.00032 0.91950 1.21572 0.95814 0.95673 0.98077 1.21672 0.94253 0.97570 0.98496 1.21413 1.00898 0.98263 0.90315 1.22447 0.95689 1.06206 0.93999 1.96687 1.75071 1.96733 1.27538 1.20842 0.80088 0.81451 0.85892 1.90794 1.41615 1.44123 1.64336 0.92094 0.94164 0.93730 0.91846 0.90295 0.85645 0.88137 0.87911 0.85733 0.82067 0.81003 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.39 6.93 127.77 0.89 8.28 16 2 N -0.45 -25.32 3.01 -658.90 -1.98 -27.31 16 3 C -0.35 -21.16 9.32 84.04 0.78 -20.38 16 4 H 0.08 5.00 7.38 -2.91 -0.02 4.98 16 5 C -0.01 -0.39 5.17 84.93 0.44 0.05 16 6 N -0.89 -52.08 10.45 21.66 0.23 -51.85 16 7 Si 1.00 44.74 29.56 68.60 2.03 46.77 16 8 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 C 0.44 22.98 6.99 87.65 0.61 23.59 16 12 O -0.62 -35.63 15.17 -3.07 -0.05 -35.68 16 13 C -0.13 -4.99 2.39 -11.55 -0.03 -5.02 16 14 H 0.14 4.63 7.31 -2.39 -0.02 4.61 16 15 C -0.10 -2.88 6.48 31.65 0.21 -2.67 16 16 C 0.11 2.50 7.28 86.83 0.63 3.14 16 17 N -0.58 -17.82 2.21 -627.60 -1.38 -19.20 16 18 C 0.15 4.24 5.37 38.16 0.21 4.44 16 19 C -0.12 -3.14 9.97 22.39 0.22 -2.91 16 20 C -0.09 -1.65 10.04 22.26 0.22 -1.43 16 21 C -0.10 -1.51 10.04 22.29 0.22 -1.29 16 22 C -0.09 -1.65 9.78 22.27 0.22 -1.43 16 23 C -0.10 -2.56 6.24 22.43 0.14 -2.42 16 24 Br -0.05 -1.12 33.08 -20.37 -0.67 -1.79 16 25 C 0.53 21.13 7.08 87.90 0.62 21.76 16 26 O -0.53 -26.22 13.67 -3.07 -0.04 -26.26 16 27 H 0.06 3.55 5.66 -2.39 -0.01 3.54 16 28 H 0.04 2.16 7.16 -2.39 -0.02 2.15 16 29 H 0.04 2.02 5.81 -2.39 -0.01 2.00 16 30 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.08 2.63 7.00 -2.38 -0.02 2.61 16 32 H 0.13 2.64 8.14 -2.38 -0.02 2.62 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.16 1.89 8.06 -2.92 -0.02 1.86 16 37 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 38 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -80.52 336.86 4.61 -75.91 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.10 Total: 15.70 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 5.39 Total: 23.71 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -3.14 Total: -98.36 kcal Atomic # 8 Polarization: -61.85 SS G_CDS: -0.09 Total: -61.94 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 35 Polarization: -1.12 SS G_CDS: -0.67 Total: -1.79 kcal Total: -80.52 4.61 -75.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.569 kcal (2) G-P(sol) polarization free energy of solvation -80.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds