Wall clock time and date at job start Tue Mar 31 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86802 * 119.99578 * 2 1 4 4 H 1.48500 * 109.47090 * 270.00193 * 3 2 1 5 5 H 1.48495 * 109.47462 * 29.99902 * 3 2 1 6 6 H 1.48503 * 109.47297 * 150.00274 * 3 2 1 7 7 C 1.38983 * 120.00599 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00059 * 187.64737 * 7 2 1 9 9 N 1.37133 * 119.99415 * 7.64243 * 7 2 1 10 10 C 1.35888 * 124.84270 * 24.69099 * 9 7 2 11 11 C 1.36383 * 109.72864 * 180.15592 * 10 9 7 12 12 C 1.46937 * 126.72222 * 179.82588 * 11 10 9 13 13 O 1.21674 * 119.99566 * 170.90020 * 12 11 10 14 14 N 1.34779 * 120.00336 * 350.90159 * 12 11 10 15 15 C 1.47429 * 125.64628 * 359.62328 * 14 12 11 16 16 C 1.54904 * 104.92524 * 204.15591 * 15 14 12 17 17 C 1.55153 * 101.58458 * 322.93498 * 16 15 14 18 18 C 1.47279 * 125.79314 * 179.62101 * 14 12 11 19 19 H 1.09005 * 109.85652 * 59.50341 * 18 14 12 20 20 C 1.52999 * 110.00568 * 298.43118 * 18 14 12 21 21 N 1.46503 * 109.47295 * 178.16275 * 20 18 14 22 22 C 1.34952 * 126.03555 * 123.76996 * 21 20 18 23 23 C 1.35320 * 107.74235 * 179.97438 * 22 21 20 24 24 C 1.39866 * 107.92244 * 0.02562 * 23 22 21 25 25 N 1.30847 * 108.20302 * 359.73843 * 24 23 22 26 26 C 1.47569 * 106.54693 * 359.56830 * 11 10 9 27 27 C 1.39185 * 133.94083 * 180.28745 * 26 11 10 28 28 C 1.37883 * 119.67535 * 179.97438 * 27 26 11 29 29 C 1.38679 * 120.29126 * 359.97438 * 28 27 26 30 30 C 1.37900 * 120.60674 * 0.02562 * 29 28 27 31 31 C 1.38310 * 124.83480 * 204.35113 * 9 7 2 32 32 H 0.96993 * 120.00606 * 359.97438 * 1 2 3 33 33 H 1.08003 * 125.13392 * 359.97438 * 10 9 7 34 34 H 1.08998 * 110.36849 * 85.26169 * 15 14 12 35 35 H 1.09004 * 110.36588 * 323.04677 * 15 14 12 36 36 H 1.09001 * 111.00205 * 81.01038 * 16 15 14 37 37 H 1.08997 * 111.00363 * 204.85715 * 16 15 14 38 38 H 1.09001 * 110.72186 * 153.86601 * 17 16 15 39 39 H 1.09001 * 110.71878 * 277.14120 * 17 16 15 40 40 H 1.09003 * 109.46794 * 298.15839 * 20 18 14 41 41 H 1.08994 * 109.47082 * 58.15884 * 20 18 14 42 42 H 1.08000 * 126.12698 * 0.02562 * 22 21 20 43 43 H 1.07998 * 126.03805 * 180.02562 * 23 22 21 44 44 H 1.07997 * 125.90055 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.15754 * 359.96284 * 27 26 11 46 46 H 1.08000 * 119.85586 * 179.97438 * 28 27 26 47 47 H 1.08001 * 119.69548 * 180.02562 * 29 28 27 48 48 H 1.07995 * 120.03186 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.4947 2.0465 -1.4001 5 1 1.4447 2.6527 0.7000 6 1 3.5449 1.4404 0.7000 7 6 2.0084 -1.2036 -0.0005 8 1 3.0812 -1.2077 0.1239 9 7 1.3319 -2.3858 -0.1590 10 6 0.1289 -2.5150 -0.7776 11 6 -0.2608 -3.8218 -0.7581 12 6 -1.5005 -4.3774 -1.3180 13 8 -1.6528 -5.5829 -1.3811 14 7 -2.4690 -3.5517 -1.7617 15 6 -2.4195 -2.0785 -1.7380 16 6 -3.9020 -1.6293 -1.7439 17 6 -4.5436 -2.6851 -2.6825 18 6 -3.7529 -3.9682 -2.3511 19 1 -4.3101 -4.5726 -1.6352 20 6 -3.5058 -4.7720 -3.6293 21 7 -4.7876 -5.2173 -4.1815 22 6 -5.2445 -4.9696 -5.4270 23 6 -6.4609 -5.5510 -5.5432 24 6 -6.7577 -6.1749 -4.3271 25 7 -5.7530 -5.9800 -3.5118 26 6 0.8094 -4.5693 -0.0700 27 6 0.9975 -5.9103 0.2520 28 6 2.1407 -6.2985 0.9181 29 6 3.1003 -5.3599 1.2663 30 6 2.9261 -4.0283 0.9531 31 6 1.7799 -3.6177 0.2821 32 1 -0.4851 0.8399 0.0004 33 1 -0.4350 -1.7047 -1.2157 34 1 -1.9055 -1.7019 -2.6223 35 1 -1.9212 -1.7301 -0.8333 36 1 -4.3308 -1.6841 -0.7433 37 1 -4.0045 -0.6258 -2.1568 38 1 -5.6013 -2.8136 -2.4524 39 1 -4.4062 -2.4065 -3.7273 40 1 -2.9938 -4.1451 -4.3594 41 1 -2.8881 -5.6400 -3.3990 42 1 -4.7309 -4.4086 -6.1937 43 1 -7.0911 -5.5360 -6.4201 44 1 -7.6584 -6.7266 -4.1016 45 1 0.2516 -6.6430 -0.0184 46 1 2.2894 -7.3382 1.1698 47 1 3.9923 -5.6747 1.7875 48 1 3.6796 -3.3052 1.2283 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072233928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:39 Heat of formation + Delta-G solvation = 115.912326 kcal Electronic energy + Delta-G solvation = -32683.256937 eV Core-core repulsion = 28512.637310 eV Total energy + Delta-G solvation = -4170.619628 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.16245 -40.50552 -39.29490 -36.77135 -36.31392 -33.66849 -33.31216 -31.55683 -30.90466 -30.23139 -29.26212 -28.85265 -27.75211 -25.72575 -25.36902 -23.32823 -21.93538 -21.34713 -21.17502 -20.97381 -20.61095 -19.96648 -18.41238 -17.71521 -17.37325 -16.63476 -15.90916 -15.44478 -15.35424 -15.09958 -14.75458 -14.47560 -14.23526 -14.08421 -13.77171 -13.65821 -13.43855 -13.33242 -13.09719 -13.04399 -12.83321 -12.76451 -12.43275 -12.14143 -12.03963 -11.80803 -11.64845 -11.50546 -11.31552 -10.99358 -10.87062 -10.80548 -10.75241 -10.58059 -10.54168 -10.37509 -10.06295 -9.44338 -9.42810 -9.08034 -8.69939 -8.63389 -8.18772 -7.33793 -7.12976 -6.81459 -4.61445 1.93344 1.98468 2.41278 2.48382 2.78862 2.85913 2.89670 2.93622 3.15967 3.50946 3.63674 4.15357 4.47233 4.51108 4.61333 4.68523 4.75491 4.82611 4.90457 4.97826 5.12342 5.24157 5.41659 5.50668 5.64745 5.67240 5.70743 5.73473 5.78786 5.81647 5.86286 5.96539 5.99196 5.99477 6.12266 6.18166 6.23684 6.31767 6.37598 6.52884 6.65651 6.68606 6.82002 6.84804 6.93341 6.96203 7.05741 7.26279 7.38016 7.45690 7.74911 7.75667 7.89527 8.12673 8.19610 8.66462 9.00063 9.12587 10.01645 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.003142 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.697990 B = 8909.693911 C =11218.752189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.046 3.954 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.342 4.342 8 H 0.110 0.890 9 N -0.274 5.274 10 C 0.119 3.881 11 C -0.316 4.316 12 C 0.616 3.384 13 O -0.564 6.564 14 N -0.619 5.619 15 C 0.086 3.914 16 C -0.130 4.130 17 C -0.124 4.124 18 C 0.136 3.864 19 H 0.085 0.915 20 C 0.121 3.879 21 N -0.358 5.358 22 C 0.052 3.948 23 C -0.281 4.281 24 C 0.035 3.965 25 N -0.288 5.288 26 C -0.056 4.056 27 C -0.081 4.081 28 C -0.158 4.158 29 C -0.137 4.137 30 C -0.104 4.104 31 C 0.047 3.953 32 H 0.284 0.716 33 H 0.193 0.807 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.170 0.830 43 H 0.143 0.857 44 H 0.179 0.821 45 H 0.118 0.882 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.607 -0.038 -7.780 10.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.469 4.469 8 H 0.128 0.872 9 N 0.065 4.935 10 C -0.024 4.024 11 C -0.326 4.326 12 C 0.413 3.587 13 O -0.445 6.445 14 N -0.355 5.355 15 C -0.036 4.036 16 C -0.168 4.168 17 C -0.162 4.162 18 C 0.031 3.969 19 H 0.103 0.897 20 C -0.001 4.001 21 N -0.140 5.140 22 C -0.095 4.095 23 C -0.310 4.310 24 C -0.150 4.150 25 N -0.110 5.110 26 C -0.061 4.061 27 C -0.100 4.100 28 C -0.177 4.177 29 C -0.157 4.157 30 C -0.124 4.124 31 C -0.060 4.060 32 H 0.095 0.905 33 H 0.209 0.791 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.187 0.813 43 H 0.161 0.839 44 H 0.196 0.804 45 H 0.136 0.864 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.944 -0.433 -6.461 9.494 hybrid contribution -0.004 1.106 -0.836 1.387 sum -6.948 0.673 -7.297 10.098 Atomic orbital electron populations 1.69719 1.06374 1.29452 1.42893 1.25541 0.95834 1.00686 0.94203 0.85635 0.79375 0.79037 0.79143 1.19402 1.20009 1.18843 1.19981 0.93546 0.81523 1.51894 0.87238 1.40064 1.14319 1.04533 1.34611 1.23090 0.88290 0.96077 0.94925 1.19321 0.98529 0.93376 1.21340 1.17091 0.81188 0.84743 0.75678 1.90676 1.80606 1.14445 1.58785 1.48372 1.16956 1.06970 1.63158 1.22817 0.96865 0.79951 1.03996 1.22779 0.95267 0.98577 1.00205 1.22661 0.99489 0.94068 0.99977 1.21624 0.85945 0.95705 0.93646 0.89703 1.22240 0.80569 1.00823 0.96502 1.48707 1.15759 1.40010 1.09529 1.22571 0.96454 1.01606 0.88900 1.21443 0.98812 1.10160 1.00632 1.23869 0.98219 1.00529 0.92421 1.77445 0.99050 1.13263 1.21226 1.18585 0.93496 0.92608 1.01364 1.20449 0.97107 0.94244 0.98196 1.20677 0.95438 0.98420 1.03178 1.20514 0.99424 0.92371 1.03406 1.19931 0.95926 0.95650 1.00908 1.18493 0.97425 0.86038 1.04031 0.90503 0.79062 0.91766 0.86844 0.90560 0.89963 0.90507 0.91066 0.88728 0.87976 0.81274 0.83878 0.80372 0.86444 0.87365 0.87170 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -18.95 10.80 55.50 0.60 -18.35 16 2 C 0.05 1.02 5.37 -17.49 -0.09 0.93 16 3 Si 0.94 17.05 29.56 -169.99 -5.02 12.02 16 4 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.28 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 7 C -0.34 -8.08 9.88 -14.90 -0.15 -8.23 16 8 H 0.11 2.47 7.84 -52.49 -0.41 2.06 16 9 N -0.27 -6.68 2.88 -59.49 -0.17 -6.85 16 10 C 0.12 2.77 8.19 -16.42 -0.13 2.63 16 11 C -0.32 -7.37 6.21 -103.24 -0.64 -8.01 16 12 C 0.62 13.43 7.63 -12.74 -0.10 13.33 16 13 O -0.56 -13.42 15.25 5.21 0.08 -13.34 16 14 N -0.62 -10.99 3.08 -164.25 -0.51 -11.50 16 15 C 0.09 1.36 5.20 -2.53 -0.01 1.34 16 16 C -0.13 -1.62 7.08 -24.59 -0.17 -1.80 16 17 C -0.12 -1.50 6.21 -24.90 -0.15 -1.65 16 18 C 0.14 2.07 3.03 -66.81 -0.20 1.87 16 19 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 20 C 0.12 1.74 5.88 -4.04 -0.02 1.71 16 21 N -0.36 -4.86 3.38 -61.36 -0.21 -5.07 16 22 C 0.05 0.56 11.45 -17.22 -0.20 0.36 16 23 C -0.28 -2.93 10.80 -40.01 -0.43 -3.36 16 24 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 25 N -0.29 -4.31 12.44 30.62 0.38 -3.93 16 26 C -0.06 -1.33 6.27 -104.92 -0.66 -1.98 16 27 C -0.08 -1.77 9.86 -39.36 -0.39 -2.16 16 28 C -0.16 -3.01 10.03 -39.55 -0.40 -3.41 16 29 C -0.14 -2.56 10.02 -39.54 -0.40 -2.96 16 30 C -0.10 -2.18 9.93 -39.42 -0.39 -2.57 16 31 C 0.05 1.12 6.73 -83.84 -0.56 0.55 16 32 H 0.28 5.79 8.31 -40.82 -0.34 5.45 16 33 H 0.19 4.15 3.06 -52.48 -0.16 3.99 16 34 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 35 H 0.11 2.09 5.45 -51.93 -0.28 1.81 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 40 H 0.09 1.15 8.02 -51.93 -0.42 0.73 16 41 H 0.10 1.77 6.83 -51.93 -0.35 1.41 16 42 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.12 2.55 7.49 -52.49 -0.39 2.15 16 46 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 47 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 48 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -29.15 394.18 -10.42 -39.58 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -6.20 Total: 14.69 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -5.31 Total: -13.19 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.10 Total: -45.71 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.02 Total: 12.02 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.15 -10.42 -39.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072233928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.488 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds