Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86802 * 119.99578 * 2 1 4 4 H 1.48500 * 109.47090 * 270.00193 * 3 2 1 5 5 H 1.48495 * 109.47462 * 29.99902 * 3 2 1 6 6 H 1.48503 * 109.47297 * 150.00274 * 3 2 1 7 7 C 1.38983 * 120.00599 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00059 * 187.64737 * 7 2 1 9 9 N 1.37133 * 119.99415 * 7.64243 * 7 2 1 10 10 C 1.35888 * 124.84270 * 24.69099 * 9 7 2 11 11 C 1.36383 * 109.72864 * 180.15592 * 10 9 7 12 12 C 1.46937 * 126.72222 * 179.82588 * 11 10 9 13 13 O 1.21674 * 119.99566 * 170.90020 * 12 11 10 14 14 N 1.34779 * 120.00336 * 350.90159 * 12 11 10 15 15 C 1.47429 * 125.64628 * 359.62328 * 14 12 11 16 16 C 1.54904 * 104.92524 * 204.15591 * 15 14 12 17 17 C 1.55153 * 101.58458 * 322.93498 * 16 15 14 18 18 C 1.47279 * 125.79314 * 179.62101 * 14 12 11 19 19 H 1.09005 * 109.85652 * 59.50341 * 18 14 12 20 20 C 1.52999 * 110.00568 * 298.43118 * 18 14 12 21 21 N 1.46503 * 109.47295 * 178.16275 * 20 18 14 22 22 C 1.34952 * 126.03555 * 123.76996 * 21 20 18 23 23 C 1.35320 * 107.74235 * 179.97438 * 22 21 20 24 24 C 1.39866 * 107.92244 * 0.02562 * 23 22 21 25 25 N 1.30847 * 108.20302 * 359.73843 * 24 23 22 26 26 C 1.47569 * 106.54693 * 359.56830 * 11 10 9 27 27 C 1.39185 * 133.94083 * 180.28745 * 26 11 10 28 28 C 1.37883 * 119.67535 * 179.97438 * 27 26 11 29 29 C 1.38679 * 120.29126 * 359.97438 * 28 27 26 30 30 C 1.37900 * 120.60674 * 0.02562 * 29 28 27 31 31 C 1.38310 * 124.83480 * 204.35113 * 9 7 2 32 32 H 0.96993 * 120.00606 * 359.97438 * 1 2 3 33 33 H 1.08003 * 125.13392 * 359.97438 * 10 9 7 34 34 H 1.08998 * 110.36849 * 85.26169 * 15 14 12 35 35 H 1.09004 * 110.36588 * 323.04677 * 15 14 12 36 36 H 1.09001 * 111.00205 * 81.01038 * 16 15 14 37 37 H 1.08997 * 111.00363 * 204.85715 * 16 15 14 38 38 H 1.09001 * 110.72186 * 153.86601 * 17 16 15 39 39 H 1.09001 * 110.71878 * 277.14120 * 17 16 15 40 40 H 1.09003 * 109.46794 * 298.15839 * 20 18 14 41 41 H 1.08994 * 109.47082 * 58.15884 * 20 18 14 42 42 H 1.08000 * 126.12698 * 0.02562 * 22 21 20 43 43 H 1.07998 * 126.03805 * 180.02562 * 23 22 21 44 44 H 1.07997 * 125.90055 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.15754 * 359.96284 * 27 26 11 46 46 H 1.08000 * 119.85586 * 179.97438 * 28 27 26 47 47 H 1.08001 * 119.69548 * 180.02562 * 29 28 27 48 48 H 1.07995 * 120.03186 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.4947 2.0465 -1.4001 5 1 1.4447 2.6527 0.7000 6 1 3.5449 1.4404 0.7000 7 6 2.0084 -1.2036 -0.0005 8 1 3.0812 -1.2077 0.1239 9 7 1.3319 -2.3858 -0.1590 10 6 0.1289 -2.5150 -0.7776 11 6 -0.2608 -3.8218 -0.7581 12 6 -1.5005 -4.3774 -1.3180 13 8 -1.6528 -5.5829 -1.3811 14 7 -2.4690 -3.5517 -1.7617 15 6 -2.4195 -2.0785 -1.7380 16 6 -3.9020 -1.6293 -1.7439 17 6 -4.5436 -2.6851 -2.6825 18 6 -3.7529 -3.9682 -2.3511 19 1 -4.3101 -4.5726 -1.6352 20 6 -3.5058 -4.7720 -3.6293 21 7 -4.7876 -5.2173 -4.1815 22 6 -5.2445 -4.9696 -5.4270 23 6 -6.4609 -5.5510 -5.5432 24 6 -6.7577 -6.1749 -4.3271 25 7 -5.7530 -5.9800 -3.5118 26 6 0.8094 -4.5693 -0.0700 27 6 0.9975 -5.9103 0.2520 28 6 2.1407 -6.2985 0.9181 29 6 3.1003 -5.3599 1.2663 30 6 2.9261 -4.0283 0.9531 31 6 1.7799 -3.6177 0.2821 32 1 -0.4851 0.8399 0.0004 33 1 -0.4350 -1.7047 -1.2157 34 1 -1.9055 -1.7019 -2.6223 35 1 -1.9212 -1.7301 -0.8333 36 1 -4.3308 -1.6841 -0.7433 37 1 -4.0045 -0.6258 -2.1568 38 1 -5.6013 -2.8136 -2.4524 39 1 -4.4062 -2.4065 -3.7273 40 1 -2.9938 -4.1451 -4.3594 41 1 -2.8881 -5.6400 -3.3990 42 1 -4.7309 -4.4086 -6.1937 43 1 -7.0911 -5.5360 -6.4201 44 1 -7.6584 -6.7266 -4.1016 45 1 0.2516 -6.6430 -0.0184 46 1 2.2894 -7.3382 1.1698 47 1 3.9923 -5.6747 1.7875 48 1 3.6796 -3.3052 1.2283 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072233928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = 101.988680 kcal Electronic energy + Delta-G solvation = -32683.860712 eV Core-core repulsion = 28512.637310 eV Total energy + Delta-G solvation = -4171.223402 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.26371 -42.01219 -40.71563 -38.32254 -37.93175 -35.13485 -34.65679 -33.07626 -32.35666 -31.21799 -30.56718 -30.34090 -29.29457 -27.23987 -26.68323 -24.77452 -23.51132 -22.70117 -22.35162 -22.19109 -21.89411 -21.18193 -19.92825 -19.39016 -18.39818 -18.20688 -17.28909 -16.91570 -16.73102 -16.49186 -16.15883 -16.02078 -15.74362 -15.33491 -15.08382 -14.95444 -14.74090 -14.69292 -14.51744 -14.42800 -14.16689 -13.76109 -13.66732 -13.63355 -13.39666 -13.17316 -13.01089 -12.99402 -12.90405 -12.37059 -12.28402 -12.10774 -12.09148 -11.83170 -11.74654 -11.69923 -11.48277 -11.08442 -10.78604 -10.43417 -10.39836 -9.75961 -9.42260 -9.02674 -8.80488 -8.50655 -6.37097 0.30012 0.78645 1.04242 1.24436 1.41677 1.45606 1.54535 1.58421 2.02177 2.09030 2.17576 2.50414 2.86961 2.94038 3.22478 3.39778 3.48181 3.63773 3.91934 4.02626 4.05100 4.09722 4.18446 4.19910 4.29059 4.31702 4.35075 4.44267 4.56152 4.62281 4.72350 4.75414 4.78820 4.88122 4.91368 4.92758 4.95996 5.03721 5.04779 5.14863 5.20251 5.21095 5.25650 5.32662 5.46062 5.60899 5.73193 5.80680 5.82806 6.07561 6.15524 6.26961 6.47904 6.56387 6.84633 6.93542 7.32507 7.42378 8.37122 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.003142 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.697990 B = 8909.693911 C =11218.752189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.014 3.986 3 Si 1.012 2.988 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.376 4.376 8 H 0.111 0.889 9 N -0.288 5.288 10 C 0.111 3.889 11 C -0.338 4.338 12 C 0.611 3.389 13 O -0.597 6.597 14 N -0.614 5.614 15 C 0.083 3.917 16 C -0.119 4.119 17 C -0.107 4.107 18 C 0.135 3.865 19 H 0.053 0.947 20 C 0.133 3.867 21 N -0.372 5.372 22 C 0.053 3.947 23 C -0.279 4.279 24 C 0.035 3.965 25 N -0.345 5.345 26 C -0.089 4.089 27 C -0.104 4.104 28 C -0.145 4.145 29 C -0.124 4.124 30 C -0.117 4.117 31 C 0.016 3.984 32 H 0.293 0.707 33 H 0.203 0.797 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.205 0.795 43 H 0.173 0.827 44 H 0.204 0.796 45 H 0.107 0.893 46 H 0.146 0.854 47 H 0.155 0.845 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 1.495 -9.063 12.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.194 4.194 3 Si 0.833 3.167 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.503 4.503 8 H 0.129 0.871 9 N 0.050 4.950 10 C -0.032 4.032 11 C -0.348 4.348 12 C 0.406 3.594 13 O -0.481 6.481 14 N -0.348 5.348 15 C -0.039 4.039 16 C -0.156 4.156 17 C -0.144 4.144 18 C 0.031 3.969 19 H 0.071 0.929 20 C 0.010 3.990 21 N -0.155 5.155 22 C -0.093 4.093 23 C -0.308 4.308 24 C -0.150 4.150 25 N -0.167 5.167 26 C -0.093 4.093 27 C -0.123 4.123 28 C -0.164 4.164 29 C -0.143 4.143 30 C -0.137 4.137 31 C -0.091 4.091 32 H 0.103 0.897 33 H 0.219 0.781 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.222 0.778 43 H 0.191 0.809 44 H 0.220 0.780 45 H 0.125 0.875 46 H 0.164 0.836 47 H 0.173 0.827 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.145 1.105 -7.760 10.606 hybrid contribution -0.002 0.522 -0.418 0.669 sum -7.147 1.627 -8.177 10.982 Atomic orbital electron populations 1.69777 1.07396 1.30728 1.42143 1.26431 0.96678 1.03189 0.93064 0.84641 0.77995 0.74752 0.79328 1.18621 1.19467 1.18790 1.20313 0.93984 0.82098 1.53909 0.87134 1.40302 1.14706 1.04985 1.34961 1.23301 0.88402 0.96233 0.95292 1.19667 0.99408 0.93823 1.21921 1.17047 0.81737 0.84660 0.75910 1.90635 1.81394 1.15749 1.60309 1.48317 1.16812 1.07698 1.61964 1.22887 0.99316 0.78545 1.03125 1.22761 0.92334 1.00167 1.00379 1.22598 0.99007 0.91602 1.01229 1.21710 0.84596 0.97291 0.93327 0.92914 1.21935 0.81073 0.99314 0.96708 1.48606 1.15363 1.40970 1.10539 1.23249 0.96680 1.01142 0.88235 1.21845 0.98936 1.09146 1.00922 1.24448 0.98128 0.99799 0.92664 1.77419 1.00578 1.15367 1.23380 1.18991 0.94181 0.93730 1.02444 1.20573 0.98463 0.93432 0.99838 1.21117 0.93912 1.00462 1.00898 1.21002 1.00382 0.91093 1.01865 1.20288 0.95413 0.97189 1.00793 1.18988 0.98657 0.86094 1.05327 0.89664 0.78104 0.90531 0.89661 0.91213 0.86787 0.89811 0.88538 0.86218 0.92009 0.77839 0.80917 0.77951 0.87477 0.83628 0.82729 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -38.97 10.80 21.66 0.23 -38.73 16 2 C 0.01 0.61 5.37 84.95 0.46 1.06 16 3 Si 1.01 34.27 29.56 68.60 2.03 36.29 16 4 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 5 H -0.27 -8.85 7.11 99.48 0.71 -8.14 16 6 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 7 C -0.38 -18.24 9.88 84.04 0.83 -17.41 16 8 H 0.11 5.11 7.84 -2.91 -0.02 5.09 16 9 N -0.29 -14.65 2.88 -342.12 -0.99 -15.64 16 10 C 0.11 5.42 8.19 83.63 0.69 6.11 16 11 C -0.34 -16.88 6.21 -18.97 -0.12 -17.00 16 12 C 0.61 28.59 7.63 86.52 0.66 29.25 16 13 O -0.60 -30.79 15.25 -4.27 -0.07 -30.86 16 14 N -0.61 -22.94 3.08 -791.78 -2.44 -25.38 16 15 C 0.08 2.66 5.20 86.85 0.45 3.11 16 16 C -0.12 -2.79 7.08 31.98 0.23 -2.57 16 17 C -0.11 -2.41 6.21 31.78 0.20 -2.22 16 18 C 0.13 4.26 3.03 45.29 0.14 4.39 16 19 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 20 C 0.13 3.91 5.88 86.38 0.51 4.42 16 21 N -0.37 -9.99 3.38 -348.05 -1.18 -11.17 16 22 C 0.05 1.02 11.45 83.54 0.96 1.97 16 23 C -0.28 -5.09 10.80 21.99 0.24 -4.85 16 24 C 0.04 0.79 12.03 85.23 1.02 1.81 16 25 N -0.35 -10.49 12.44 -57.02 -0.71 -11.20 16 26 C -0.09 -4.47 6.27 -20.06 -0.13 -4.59 16 27 C -0.10 -4.72 9.86 22.41 0.22 -4.50 16 28 C -0.15 -5.37 10.03 22.29 0.22 -5.15 16 29 C -0.12 -4.39 10.02 22.29 0.22 -4.17 16 30 C -0.12 -4.89 9.93 22.37 0.22 -4.67 16 31 C 0.02 0.78 6.73 38.83 0.26 1.04 16 32 H 0.29 11.81 8.31 -92.71 -0.77 11.04 16 33 H 0.20 9.12 3.06 -2.91 -0.01 9.11 16 34 H 0.08 2.25 7.93 -2.39 -0.02 2.23 16 35 H 0.09 3.28 5.45 -2.38 -0.01 3.27 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 1.74 7.82 -2.39 -0.02 1.73 16 40 H 0.12 2.82 8.02 -2.39 -0.02 2.80 16 41 H 0.06 2.32 6.83 -2.39 -0.02 2.30 16 42 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 45 H 0.11 4.95 7.49 -2.91 -0.02 4.93 16 46 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 47 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 48 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -69.43 394.18 5.16 -64.27 By element: Atomic # 1 Polarization: 45.38 SS G_CDS: 0.99 Total: 46.37 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 7.28 Total: -13.96 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -5.08 Total: -102.11 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.07 Total: -30.86 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.29 kcal Total: -69.43 5.16 -64.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072233928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.255 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds