Wall clock time and date at job start Tue Mar 31 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48501 * 109.46825 * 274.26089 * 3 2 1 5 5 H 1.48493 * 109.47094 * 34.26077 * 3 2 1 6 6 H 1.48501 * 109.47104 * 154.26411 * 3 2 1 7 7 C 1.38986 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99389 * 343.44010 * 7 2 1 9 9 N 1.37122 * 120.00306 * 163.43751 * 7 2 1 10 10 C 1.35896 * 124.83416 * 338.97554 * 9 7 2 11 11 C 1.36383 * 109.72771 * 179.97438 * 10 9 7 12 12 C 1.46935 * 126.72698 * 179.97438 * 11 10 9 13 13 O 1.21671 * 119.99923 * 132.24174 * 12 11 10 14 14 N 1.34773 * 120.00108 * 312.23299 * 12 11 10 15 15 C 1.46931 * 120.62785 * 354.60316 * 14 12 11 16 16 C 1.53193 * 108.77369 * 126.40938 * 15 14 12 17 17 C 1.53042 * 109.31262 * 54.63477 * 16 15 14 18 18 C 1.53037 * 109.53999 * 298.63486 * 17 16 15 19 19 H 1.08999 * 109.49681 * 301.38402 * 18 17 16 20 20 N 1.46502 * 109.49891 * 181.31530 * 18 17 16 21 21 C 1.36875 * 126.39463 * 120.02230 * 20 18 17 22 22 C 1.34674 * 106.81563 * 180.02562 * 21 20 18 23 23 N 1.34126 * 108.02074 * 0.02562 * 22 21 20 24 24 C 1.30503 * 109.25359 * 359.97438 * 23 22 21 25 25 C 1.46921 * 120.63533 * 174.62019 * 14 12 11 26 26 C 1.47578 * 106.54694 * 0.22413 * 11 10 9 27 27 C 1.39181 * 133.94436 * 179.75024 * 26 11 10 28 28 C 1.37892 * 119.67910 * 180.02562 * 27 26 11 29 29 C 1.38676 * 120.28458 * 359.97438 * 28 27 26 30 30 C 1.37905 * 120.60994 * 359.69960 * 29 28 27 31 31 C 1.38304 * 124.84272 * 158.95100 * 9 7 2 32 32 H 0.97001 * 120.00204 * 0.02562 * 1 2 3 33 33 H 1.07993 * 125.13528 * 359.95683 * 10 9 7 34 34 H 1.09006 * 109.58653 * 6.62670 * 15 14 12 35 35 H 1.08994 * 109.70674 * 246.26201 * 15 14 12 36 36 H 1.09003 * 109.50211 * 294.68108 * 16 15 14 37 37 H 1.09003 * 109.52423 * 174.60052 * 16 15 14 38 38 H 1.09000 * 109.46126 * 178.61132 * 17 16 15 39 39 H 1.09006 * 109.46033 * 58.65451 * 17 16 15 40 40 H 1.08001 * 126.59766 * 359.97438 * 21 20 18 41 41 H 1.08002 * 125.98849 * 179.97438 * 22 21 20 42 42 H 1.07999 * 125.64865 * 179.73481 * 24 23 22 43 43 H 1.09003 * 109.58730 * 113.80290 * 25 14 12 44 44 H 1.09003 * 109.58681 * 353.38362 * 25 14 12 45 45 H 1.07998 * 120.16120 * 0.04565 * 27 26 11 46 46 H 1.07999 * 119.85762 * 180.02562 * 28 27 26 47 47 H 1.08002 * 119.69081 * 180.02562 * 29 28 27 48 48 H 1.08001 * 120.02968 * 179.89683 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4047 2.0984 -1.3962 5 1 1.4928 2.6250 0.7881 6 1 3.5871 1.4159 0.6079 7 6 2.0083 -1.2036 0.0005 8 1 1.5018 -2.1194 0.2675 9 7 3.3369 -1.2285 -0.3380 10 6 3.9715 -0.2694 -1.0620 11 6 5.2848 -0.6031 -1.2169 12 6 6.3084 0.1680 -1.9358 13 8 7.3895 0.3752 -1.4175 14 7 6.0497 0.6455 -3.1692 15 6 4.7963 0.3052 -3.8561 16 6 4.1062 1.6010 -4.2935 17 6 5.0776 2.4330 -5.1340 18 6 6.3011 2.7983 -4.2903 19 1 5.9823 3.3562 -3.4098 20 7 7.2157 3.6210 -5.0859 21 6 7.6239 4.8947 -4.7951 22 6 8.4561 5.2725 -5.7842 23 7 8.5529 4.2574 -6.6555 24 6 7.8127 3.2646 -6.2435 25 6 7.0159 1.5161 -3.8528 26 6 5.4749 -1.8933 -0.5262 27 6 6.5667 -2.7353 -0.3359 28 6 6.4108 -3.9047 0.3779 29 6 5.1735 -4.2425 0.9051 30 6 4.0854 -3.4138 0.7295 31 6 4.2221 -2.2328 0.0092 32 1 -0.4850 0.8400 -0.0004 33 1 3.5061 0.6221 -1.4556 34 1 4.1447 -0.2443 -3.1765 35 1 5.0115 -0.3076 -4.7314 36 1 3.8080 2.1698 -3.4127 37 1 3.2242 1.3615 -4.8876 38 1 4.5810 3.3443 -5.4672 39 1 5.3946 1.8543 -6.0017 40 1 7.3337 5.4838 -3.9377 41 1 8.9570 6.2261 -5.8626 42 1 7.6935 2.3169 -6.7475 43 1 7.4145 1.0031 -4.7281 44 1 7.8291 1.7655 -3.1711 45 1 7.5314 -2.4738 -0.7450 46 1 7.2561 -4.5600 0.5276 47 1 5.0623 -5.1606 1.4630 48 1 3.1257 -3.6869 1.1428 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072254966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:01 Heat of formation + Delta-G solvation = 100.772301 kcal Electronic energy + Delta-G solvation = -32958.467867 eV Core-core repulsion = 28787.191718 eV Total energy + Delta-G solvation = -4171.276148 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.27500 -40.93865 -39.56658 -37.28053 -36.58473 -34.30199 -33.52216 -32.25489 -31.64777 -30.18145 -29.39353 -29.25344 -28.23624 -26.09477 -25.01442 -23.88009 -22.47192 -22.08889 -21.68818 -21.26099 -20.80071 -20.08455 -18.68949 -17.89512 -17.65610 -16.85830 -16.23142 -15.88482 -15.66659 -15.32137 -15.01028 -14.92899 -14.49514 -14.32932 -14.15782 -14.15061 -13.92183 -13.68521 -13.55764 -13.49085 -13.08310 -13.02099 -12.90058 -12.81148 -12.60994 -12.06086 -11.89296 -11.61515 -11.44597 -11.27663 -11.19549 -11.08353 -10.89862 -10.70821 -10.32631 -10.24342 -10.10662 -9.83564 -9.58264 -9.46322 -8.94174 -8.66530 -8.58179 -7.61376 -7.19477 -7.15997 -4.65849 1.66532 1.92171 2.21826 2.43594 2.60737 2.78632 2.86389 2.95470 3.06274 3.18351 3.54314 3.61004 3.98905 4.18448 4.35736 4.41611 4.55281 4.57134 4.66277 4.69614 4.80763 4.96019 5.11770 5.21102 5.28156 5.29547 5.40040 5.44519 5.49847 5.53993 5.58407 5.61528 5.66055 5.72989 5.85467 5.90425 5.98919 6.08875 6.15968 6.22082 6.38824 6.43789 6.57708 6.61441 6.66674 6.91352 7.03809 7.09384 7.21522 7.32654 7.42268 7.59013 7.68657 7.88583 7.94524 8.47319 8.57429 8.74772 9.89980 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.003357 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.614429 B = 8338.868942 C =10119.040538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.344 4.344 8 H 0.129 0.871 9 N -0.268 5.268 10 C 0.037 3.963 11 C -0.284 4.284 12 C 0.609 3.391 13 O -0.548 6.548 14 N -0.615 5.615 15 C 0.096 3.904 16 C -0.137 4.137 17 C -0.124 4.124 18 C 0.118 3.882 19 H 0.104 0.896 20 N -0.449 5.449 21 C -0.053 4.053 22 C -0.033 4.033 23 N -0.497 5.497 24 C 0.183 3.817 25 C 0.111 3.889 26 C -0.060 4.060 27 C -0.085 4.085 28 C -0.149 4.149 29 C -0.135 4.135 30 C -0.093 4.093 31 C 0.052 3.948 32 H 0.290 0.710 33 H 0.153 0.847 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.172 0.828 41 H 0.168 0.832 42 H 0.201 0.799 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 3.680 -8.257 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.141 4.141 3 Si 0.701 3.299 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.471 4.471 8 H 0.146 0.854 9 N 0.072 4.928 10 C -0.103 4.103 11 C -0.295 4.295 12 C 0.402 3.598 13 O -0.426 6.426 14 N -0.350 5.350 15 C -0.026 4.026 16 C -0.176 4.176 17 C -0.163 4.163 18 C 0.014 3.986 19 H 0.122 0.878 20 N -0.132 5.132 21 C -0.186 4.186 22 C -0.181 4.181 23 N -0.216 5.216 24 C -0.100 4.100 25 C -0.013 4.013 26 C -0.065 4.065 27 C -0.103 4.103 28 C -0.168 4.168 29 C -0.155 4.155 30 C -0.112 4.112 31 C -0.055 4.055 32 H 0.101 0.899 33 H 0.169 0.831 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.189 0.811 41 H 0.185 0.815 42 H 0.218 0.782 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.132 0.868 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.354 3.777 -8.460 11.234 hybrid contribution -0.574 1.073 0.790 1.450 sum 5.780 4.849 -7.671 10.759 Atomic orbital electron populations 1.69623 1.06257 1.29906 1.39231 1.25306 0.95544 0.99220 0.94004 0.86884 0.81621 0.82046 0.79390 1.19025 1.20330 1.16740 1.19618 0.80992 0.98266 1.48234 0.85403 1.40161 1.07272 1.13363 1.32022 1.21455 0.92071 0.96107 1.00693 1.19010 0.93085 1.00788 1.16643 1.17512 0.86314 0.76911 0.79074 1.90713 1.25643 1.58795 1.67433 1.47935 1.19894 1.50227 1.16918 1.21989 0.85716 0.96513 0.98428 1.21988 0.98358 0.96692 1.00531 1.21898 0.94746 1.01128 0.98481 1.21952 0.89448 0.92596 0.94602 0.87823 1.45623 1.35207 1.12695 1.19634 1.22784 1.04709 0.87165 1.03989 1.22275 1.02796 0.99625 0.93428 1.70302 1.21425 1.00753 1.29070 1.24880 0.96661 1.00868 0.87559 1.21665 0.92498 0.88726 0.98406 1.18475 0.92877 0.94295 1.00872 1.20304 0.96884 0.93794 0.99351 1.20692 0.97076 0.97448 1.01548 1.20567 0.92694 0.99435 1.02828 1.20025 0.99044 0.92495 0.99680 1.18204 0.88748 0.94175 1.04416 0.89928 0.83068 0.87325 0.91144 0.91072 0.89360 0.90793 0.90593 0.81093 0.81491 0.78246 0.90964 0.88274 0.87015 0.87051 0.86758 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.87 13.95 55.50 0.77 -19.10 16 2 C 0.07 1.71 5.46 -17.49 -0.10 1.62 16 3 Si 0.87 17.99 24.59 -169.99 -4.18 13.81 16 4 H -0.26 -4.87 6.76 56.52 0.38 -4.49 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.24 -5.36 6.50 56.52 0.37 -5.00 16 7 C -0.34 -8.21 10.35 -14.91 -0.15 -8.37 16 8 H 0.13 3.17 8.06 -52.49 -0.42 2.75 16 9 N -0.27 -6.07 2.76 -59.49 -0.16 -6.23 16 10 C 0.04 0.78 5.87 -16.42 -0.10 0.69 16 11 C -0.28 -5.90 5.27 -103.24 -0.54 -6.45 16 12 C 0.61 11.72 7.58 -12.74 -0.10 11.62 16 13 O -0.55 -11.97 16.55 5.21 0.09 -11.89 16 14 N -0.62 -9.11 2.97 -174.22 -0.52 -9.63 16 15 C 0.10 1.22 6.05 -3.71 -0.02 1.20 16 16 C -0.14 -1.45 6.08 -26.61 -0.16 -1.61 16 17 C -0.12 -1.13 5.20 -26.69 -0.14 -1.26 16 18 C 0.12 1.23 3.01 -67.81 -0.20 1.03 16 19 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 20 N -0.45 -4.77 2.62 -111.34 -0.29 -5.06 16 21 C -0.05 -0.56 11.54 -16.56 -0.19 -0.75 16 22 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 23 N -0.50 -6.51 11.25 -14.66 -0.16 -6.67 16 24 C 0.18 2.01 11.48 -90.38 -1.04 0.97 16 25 C 0.11 1.37 5.81 -3.72 -0.02 1.35 16 26 C -0.06 -1.29 6.36 -104.92 -0.67 -1.95 16 27 C -0.08 -1.61 10.09 -39.36 -0.40 -2.01 16 28 C -0.15 -2.49 10.03 -39.55 -0.40 -2.89 16 29 C -0.14 -2.26 10.02 -39.54 -0.40 -2.66 16 30 C -0.09 -1.78 9.93 -39.42 -0.39 -2.17 16 31 C 0.05 1.14 6.73 -83.84 -0.56 0.58 16 32 H 0.29 6.41 8.31 -40.82 -0.34 6.07 16 33 H 0.15 3.00 3.75 -52.49 -0.20 2.80 16 34 H 0.11 1.64 4.54 -51.93 -0.24 1.41 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.60 7.98 -51.93 -0.41 0.19 16 40 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.07 0.77 7.80 -51.93 -0.41 0.37 16 44 H 0.10 1.43 7.04 -51.93 -0.37 1.06 16 45 H 0.11 2.05 8.06 -52.49 -0.42 1.62 16 46 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 47 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 48 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 388.31 15.07 5.85 5.85 Total: -1.00 -29.09 388.31 -10.70 -39.78 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.30 Total: 10.79 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -5.79 Total: -11.67 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.36 Total: -46.69 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -4.18 Total: 13.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.09 -10.70 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072254966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.556 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds