Wall clock time and date at job start Tue Mar 31 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48501 * 109.46825 * 274.26089 * 3 2 1 5 5 H 1.48493 * 109.47094 * 34.26077 * 3 2 1 6 6 H 1.48501 * 109.47104 * 154.26411 * 3 2 1 7 7 C 1.38986 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99389 * 343.44010 * 7 2 1 9 9 N 1.37122 * 120.00306 * 163.43751 * 7 2 1 10 10 C 1.35896 * 124.83416 * 338.97554 * 9 7 2 11 11 C 1.36383 * 109.72771 * 179.97438 * 10 9 7 12 12 C 1.46935 * 126.72698 * 179.97438 * 11 10 9 13 13 O 1.21671 * 119.99923 * 132.24174 * 12 11 10 14 14 N 1.34773 * 120.00108 * 312.23299 * 12 11 10 15 15 C 1.46931 * 120.62785 * 354.60316 * 14 12 11 16 16 C 1.53193 * 108.77369 * 126.40938 * 15 14 12 17 17 C 1.53042 * 109.31262 * 54.63477 * 16 15 14 18 18 C 1.53037 * 109.53999 * 298.63486 * 17 16 15 19 19 H 1.08999 * 109.49681 * 301.38402 * 18 17 16 20 20 N 1.46502 * 109.49891 * 181.31530 * 18 17 16 21 21 C 1.36875 * 126.39463 * 120.02230 * 20 18 17 22 22 C 1.34674 * 106.81563 * 180.02562 * 21 20 18 23 23 N 1.34126 * 108.02074 * 0.02562 * 22 21 20 24 24 C 1.30503 * 109.25359 * 359.97438 * 23 22 21 25 25 C 1.46921 * 120.63533 * 174.62019 * 14 12 11 26 26 C 1.47578 * 106.54694 * 0.22413 * 11 10 9 27 27 C 1.39181 * 133.94436 * 179.75024 * 26 11 10 28 28 C 1.37892 * 119.67910 * 180.02562 * 27 26 11 29 29 C 1.38676 * 120.28458 * 359.97438 * 28 27 26 30 30 C 1.37905 * 120.60994 * 359.69960 * 29 28 27 31 31 C 1.38304 * 124.84272 * 158.95100 * 9 7 2 32 32 H 0.97001 * 120.00204 * 0.02562 * 1 2 3 33 33 H 1.07993 * 125.13528 * 359.95683 * 10 9 7 34 34 H 1.09006 * 109.58653 * 6.62670 * 15 14 12 35 35 H 1.08994 * 109.70674 * 246.26201 * 15 14 12 36 36 H 1.09003 * 109.50211 * 294.68108 * 16 15 14 37 37 H 1.09003 * 109.52423 * 174.60052 * 16 15 14 38 38 H 1.09000 * 109.46126 * 178.61132 * 17 16 15 39 39 H 1.09006 * 109.46033 * 58.65451 * 17 16 15 40 40 H 1.08001 * 126.59766 * 359.97438 * 21 20 18 41 41 H 1.08002 * 125.98849 * 179.97438 * 22 21 20 42 42 H 1.07999 * 125.64865 * 179.73481 * 24 23 22 43 43 H 1.09003 * 109.58730 * 113.80290 * 25 14 12 44 44 H 1.09003 * 109.58681 * 353.38362 * 25 14 12 45 45 H 1.07998 * 120.16120 * 0.04565 * 27 26 11 46 46 H 1.07999 * 119.85762 * 180.02562 * 28 27 26 47 47 H 1.08002 * 119.69081 * 180.02562 * 29 28 27 48 48 H 1.08001 * 120.02968 * 179.89683 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4047 2.0984 -1.3962 5 1 1.4928 2.6250 0.7881 6 1 3.5871 1.4159 0.6079 7 6 2.0083 -1.2036 0.0005 8 1 1.5018 -2.1194 0.2675 9 7 3.3369 -1.2285 -0.3380 10 6 3.9715 -0.2694 -1.0620 11 6 5.2848 -0.6031 -1.2169 12 6 6.3084 0.1680 -1.9358 13 8 7.3895 0.3752 -1.4175 14 7 6.0497 0.6455 -3.1692 15 6 4.7963 0.3052 -3.8561 16 6 4.1062 1.6010 -4.2935 17 6 5.0776 2.4330 -5.1340 18 6 6.3011 2.7983 -4.2903 19 1 5.9823 3.3562 -3.4098 20 7 7.2157 3.6210 -5.0859 21 6 7.6239 4.8947 -4.7951 22 6 8.4561 5.2725 -5.7842 23 7 8.5529 4.2574 -6.6555 24 6 7.8127 3.2646 -6.2435 25 6 7.0159 1.5161 -3.8528 26 6 5.4749 -1.8933 -0.5262 27 6 6.5667 -2.7353 -0.3359 28 6 6.4108 -3.9047 0.3779 29 6 5.1735 -4.2425 0.9051 30 6 4.0854 -3.4138 0.7295 31 6 4.2221 -2.2328 0.0092 32 1 -0.4850 0.8400 -0.0004 33 1 3.5061 0.6221 -1.4556 34 1 4.1447 -0.2443 -3.1765 35 1 5.0115 -0.3076 -4.7314 36 1 3.8080 2.1698 -3.4127 37 1 3.2242 1.3615 -4.8876 38 1 4.5810 3.3443 -5.4672 39 1 5.3946 1.8543 -6.0017 40 1 7.3337 5.4838 -3.9377 41 1 8.9570 6.2261 -5.8626 42 1 7.6935 2.3169 -6.7475 43 1 7.4145 1.0031 -4.7281 44 1 7.8291 1.7655 -3.1711 45 1 7.5314 -2.4738 -0.7450 46 1 7.2561 -4.5600 0.5276 47 1 5.0623 -5.1606 1.4630 48 1 3.1257 -3.6869 1.1428 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072254966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:59 Heat of formation + Delta-G solvation = 87.293427 kcal Electronic energy + Delta-G solvation = -32959.052355 eV Core-core repulsion = 28787.191718 eV Total energy + Delta-G solvation = -4171.860636 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.10879 -42.47920 -40.83112 -38.51545 -38.07984 -35.47733 -35.10811 -33.27048 -33.17259 -31.16767 -30.91827 -30.22062 -29.56895 -27.47897 -26.39484 -24.85144 -23.88180 -23.36084 -22.75305 -22.34259 -22.14224 -21.07187 -19.89700 -19.55379 -18.79340 -18.09973 -17.70611 -17.21899 -17.09846 -16.42038 -16.30343 -15.88754 -15.78118 -15.70309 -15.50522 -15.13963 -15.02012 -14.91598 -14.71247 -14.56135 -14.39037 -14.36338 -14.26052 -14.15783 -13.69676 -13.52628 -13.21121 -12.97570 -12.77218 -12.46789 -12.40222 -12.16533 -12.11222 -11.97351 -11.86471 -11.79142 -11.22885 -11.04057 -10.95942 -10.67351 -10.51409 -9.77976 -9.46027 -9.16482 -8.93661 -8.74785 -6.45632 0.14924 0.73288 0.97061 1.09516 1.17536 1.22551 1.29312 1.54578 1.85934 1.94869 2.15239 2.22420 2.43615 2.70731 3.13248 3.33839 3.44282 3.68808 3.74931 3.78450 3.86735 3.90482 3.95734 4.00557 4.10386 4.30790 4.33351 4.38779 4.43104 4.51393 4.52470 4.59865 4.66094 4.71911 4.73243 4.79333 4.85761 4.92459 4.97909 4.98600 5.13214 5.15622 5.30121 5.34502 5.43472 5.61590 5.68083 5.75813 5.80606 5.88768 6.02741 6.23374 6.24689 6.29639 6.75471 7.03912 7.12633 7.14870 8.18324 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.003357 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.614429 B = 8338.868942 C =10119.040538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.045 3.955 3 Si 0.917 3.083 4 H -0.229 1.229 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.360 4.360 8 H 0.104 0.896 9 N -0.290 5.290 10 C 0.042 3.958 11 C -0.289 4.289 12 C 0.606 3.394 13 O -0.583 6.583 14 N -0.604 5.604 15 C 0.091 3.909 16 C -0.132 4.132 17 C -0.115 4.115 18 C 0.128 3.872 19 H 0.097 0.903 20 N -0.449 5.449 21 C -0.058 4.058 22 C -0.050 4.050 23 N -0.533 5.533 24 C 0.181 3.819 25 C 0.112 3.888 26 C -0.087 4.087 27 C -0.098 4.098 28 C -0.136 4.136 29 C -0.117 4.117 30 C -0.117 4.117 31 C 0.029 3.971 32 H 0.296 0.704 33 H 0.161 0.839 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.191 0.809 41 H 0.182 0.818 42 H 0.227 0.773 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.152 0.848 47 H 0.155 0.845 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.167 3.605 -9.728 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.165 4.165 3 Si 0.741 3.259 4 H -0.153 1.153 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.121 0.879 9 N 0.048 4.952 10 C -0.097 4.097 11 C -0.300 4.300 12 C 0.398 3.602 13 O -0.464 6.464 14 N -0.337 5.337 15 C -0.031 4.031 16 C -0.171 4.171 17 C -0.153 4.153 18 C 0.024 3.976 19 H 0.116 0.884 20 N -0.132 5.132 21 C -0.190 4.190 22 C -0.197 4.197 23 N -0.251 5.251 24 C -0.101 4.101 25 C -0.011 4.011 26 C -0.091 4.091 27 C -0.117 4.117 28 C -0.155 4.155 29 C -0.136 4.136 30 C -0.136 4.136 31 C -0.078 4.078 32 H 0.107 0.893 33 H 0.177 0.823 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.208 0.792 41 H 0.199 0.801 42 H 0.243 0.757 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.134 0.866 46 H 0.170 0.830 47 H 0.172 0.828 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.481 3.722 -9.983 13.018 hybrid contribution -0.752 0.929 1.250 1.729 sum 6.729 4.650 -8.734 11.966 Atomic orbital electron populations 1.69661 1.07171 1.30912 1.41064 1.25763 0.95968 1.01186 0.93619 0.86257 0.79075 0.79444 0.81139 1.15316 1.19749 1.19500 1.19419 0.81918 0.97815 1.49594 0.87866 1.40159 1.06984 1.14450 1.33572 1.21632 0.92132 0.95925 1.00058 1.19341 0.93312 1.00911 1.16477 1.17382 0.85471 0.77047 0.80283 1.90686 1.26616 1.60426 1.68682 1.47886 1.20927 1.49335 1.15565 1.22166 0.84456 0.98041 0.98414 1.21963 0.99268 0.95342 1.00496 1.21851 0.93479 1.01570 0.98366 1.21805 0.89626 0.91387 0.94820 0.88448 1.45631 1.35259 1.12732 1.19557 1.23157 1.04255 0.87290 1.04340 1.22639 1.03320 1.00170 0.93580 1.70291 1.22718 1.01853 1.30282 1.25404 0.95858 1.01362 0.87465 1.21779 0.91515 0.89520 0.98278 1.18852 0.93513 0.95121 1.01640 1.20534 0.96448 0.94552 1.00178 1.21162 0.98301 0.96679 0.99318 1.21049 0.91599 0.99801 1.01179 1.20315 1.00333 0.92602 1.00386 1.18696 0.89031 0.94874 1.05196 0.89269 0.82260 0.89958 0.88433 0.92657 0.87241 0.89767 0.88546 0.79192 0.80052 0.75701 0.88644 0.90593 0.86605 0.83048 0.82764 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.64 13.95 21.66 0.30 -42.34 16 2 C 0.05 2.18 5.46 84.95 0.46 2.64 16 3 Si 0.92 37.33 24.59 68.60 1.69 39.01 16 4 H -0.23 -7.91 6.76 99.48 0.67 -7.23 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -12.07 6.50 99.48 0.65 -11.42 16 7 C -0.36 -18.06 10.35 84.05 0.87 -17.19 16 8 H 0.10 5.50 8.06 -2.91 -0.02 5.47 16 9 N -0.29 -13.60 2.76 -342.13 -0.94 -14.55 16 10 C 0.04 1.79 5.87 83.63 0.49 2.29 16 11 C -0.29 -12.19 5.27 -18.97 -0.10 -12.29 16 12 C 0.61 23.36 7.58 86.52 0.66 24.01 16 13 O -0.58 -25.77 16.55 -4.26 -0.07 -25.84 16 14 N -0.60 -17.16 2.97 -823.32 -2.45 -19.61 16 15 C 0.09 2.14 6.05 86.36 0.52 2.66 16 16 C -0.13 -2.41 6.08 30.67 0.19 -2.23 16 17 C -0.11 -1.66 5.20 30.62 0.16 -1.50 16 18 C 0.13 2.34 3.01 45.07 0.14 2.48 16 19 H 0.10 1.95 8.08 -2.39 -0.02 1.93 16 20 N -0.45 -8.46 2.62 -506.16 -1.33 -9.79 16 21 C -0.06 -1.10 11.54 83.09 0.96 -0.14 16 22 C -0.05 -1.07 11.87 83.53 0.99 -0.08 16 23 N -0.53 -13.06 11.25 -200.31 -2.25 -15.32 16 24 C 0.18 3.53 11.48 180.26 2.07 5.60 16 25 C 0.11 2.56 5.81 86.36 0.50 3.06 16 26 C -0.09 -3.72 6.36 -20.06 -0.13 -3.85 16 27 C -0.10 -3.66 10.09 22.41 0.23 -3.43 16 28 C -0.14 -4.17 10.03 22.29 0.22 -3.95 16 29 C -0.12 -3.62 10.02 22.30 0.22 -3.40 16 30 C -0.12 -4.48 9.93 22.37 0.22 -4.26 16 31 C 0.03 1.31 6.73 38.83 0.26 1.57 16 32 H 0.30 13.36 8.31 -92.71 -0.77 12.59 16 33 H 0.16 6.34 3.75 -2.91 -0.01 6.33 16 34 H 0.08 2.44 4.54 -2.38 -0.01 2.43 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.06 7.98 -2.38 -0.02 1.05 16 40 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.23 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.10 1.76 7.80 -2.39 -0.02 1.74 16 44 H 0.08 2.14 7.04 -2.39 -0.02 2.12 16 45 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 46 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 47 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 48 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -66.61 388.31 4.78 -61.83 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.89 Total: 34.61 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 8.94 Total: -8.01 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -6.67 Total: -101.60 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.07 Total: -25.84 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 1.69 Total: 39.01 kcal Total: -66.61 4.78 -61.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072254966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.124 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds