Wall clock time and date at job start Tue Mar 31 2020 05:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31339 * 1 3 3 Si 1.86794 * 120.00498 * 2 1 4 4 H 1.48502 * 109.46820 * 240.00031 * 3 2 1 5 5 H 1.48500 * 109.47141 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47579 * 119.99443 * 3 2 1 7 7 C 1.38983 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00307 * 168.61665 * 7 2 1 9 9 N 1.37129 * 120.00232 * 348.62265 * 7 2 1 10 10 C 1.35892 * 124.83929 * 338.77581 * 9 7 2 11 11 C 1.36375 * 109.73652 * 179.97438 * 10 9 7 12 12 C 1.46935 * 126.73180 * 179.97438 * 11 10 9 13 13 O 1.21676 * 119.99843 * 130.48991 * 12 11 10 14 14 N 1.34778 * 119.99898 * 310.76796 * 12 11 10 15 15 C 1.46931 * 120.62994 * 3.83143 * 14 12 11 16 16 C 1.52764 * 109.00191 * 233.58077 * 15 14 12 17 17 C 1.53034 * 109.38418 * 305.58608 * 16 15 14 18 18 C 1.53043 * 109.53987 * 61.24179 * 17 16 15 19 19 H 1.09002 * 109.51847 * 58.60519 * 18 17 16 20 20 N 1.46496 * 109.49531 * 178.68149 * 18 17 16 21 21 C 1.36886 * 126.39774 * 239.55035 * 20 18 17 22 22 C 1.34665 * 106.81975 * 179.84948 * 21 20 18 23 23 N 1.34126 * 108.02028 * 0.42045 * 22 21 20 24 24 C 1.30503 * 109.25778 * 359.73327 * 23 22 21 25 25 C 1.46930 * 120.62857 * 184.10120 * 14 12 11 26 26 C 1.47569 * 106.54292 * 0.26244 * 11 10 9 27 27 C 1.39194 * 133.94236 * 180.53557 * 26 11 10 28 28 C 1.37883 * 119.67681 * 179.56678 * 27 26 11 29 29 C 1.38676 * 120.28981 * 359.65191 * 28 27 26 30 30 C 1.37895 * 120.61063 * 0.04789 * 29 28 27 31 31 C 1.38301 * 124.84487 * 158.75441 * 9 7 2 32 32 H 0.97004 * 119.99560 * 0.02562 * 1 2 3 33 33 H 1.08006 * 125.12959 * 359.95880 * 10 9 7 34 34 H 1.08994 * 109.58486 * 353.41138 * 15 14 12 35 35 H 1.08997 * 109.58804 * 113.84002 * 15 14 12 36 36 H 1.09007 * 109.55989 * 185.55322 * 16 15 14 37 37 H 1.08997 * 109.38450 * 65.51749 * 16 15 14 38 38 H 1.09000 * 109.46228 * 301.22016 * 17 16 15 39 39 H 1.09001 * 109.45041 * 181.25626 * 17 16 15 40 40 H 1.08001 * 126.58938 * 359.97438 * 21 20 18 41 41 H 1.07996 * 125.99424 * 180.19446 * 22 21 20 42 42 H 1.07999 * 125.65623 * 180.02562 * 24 23 22 43 43 H 1.08993 * 109.58703 * 246.15691 * 25 14 12 44 44 H 1.09001 * 109.58601 * 6.44735 * 25 14 12 45 45 H 1.07997 * 120.16147 * 359.24259 * 27 26 11 46 46 H 1.08004 * 119.85309 * 179.66920 * 28 27 26 47 47 H 1.08005 * 119.69738 * 180.02562 * 29 28 27 48 48 H 1.07994 * 120.03838 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6176 0.0000 4 1 3.1012 1.6961 -1.2125 5 1 1.2826 2.7464 -0.0006 6 1 3.1011 1.6964 1.2124 7 6 2.0082 -1.2037 0.0005 8 1 3.0723 -1.2131 -0.1840 9 7 1.3428 -2.3795 0.2353 10 6 0.1435 -2.4801 0.8664 11 6 -0.2337 -3.7890 0.9326 12 6 -1.4637 -4.3196 1.5362 13 8 -2.1584 -5.1013 0.9143 14 7 -1.8255 -3.9360 2.7766 15 6 -1.0462 -2.9253 3.5048 16 6 -0.6546 -3.4878 4.8700 17 6 -1.9112 -3.9617 5.6036 18 6 -2.5862 -5.0734 4.7970 19 1 -1.8883 -5.8996 4.6606 20 7 -3.7714 -5.5481 5.5153 21 6 -3.9989 -6.8251 5.9527 22 6 -5.1999 -6.8202 6.5618 23 7 -5.6965 -5.5764 6.4900 24 6 -4.8463 -4.8089 5.8645 25 6 -3.0031 -4.5250 3.4287 26 6 0.8392 -4.5686 0.2855 27 6 1.0315 -5.9243 0.0349 28 6 2.1716 -6.3429 -0.6178 29 6 3.1204 -5.4194 -1.0302 30 6 2.9391 -4.0731 -0.7937 31 6 1.7962 -3.6319 -0.1367 32 1 -0.4850 0.8401 -0.0004 33 1 -0.4250 -1.6489 1.2568 34 1 -0.1466 -2.6810 2.9400 35 1 -1.6493 -2.0278 3.6417 36 1 -0.1616 -2.7123 5.4564 37 1 0.0258 -4.3283 4.7334 38 1 -2.6016 -3.1261 5.7185 39 1 -1.6355 -4.3428 6.5869 40 1 -3.3407 -7.6731 5.8340 41 1 -5.6808 -7.6698 7.0236 42 1 -4.9799 -3.7568 5.6603 43 1 -3.7689 -3.7606 3.5594 44 1 -3.3955 -5.3340 2.8126 45 1 0.2937 -6.6452 0.3549 46 1 2.3263 -7.3946 -0.8089 47 1 4.0098 -5.7578 -1.5411 48 1 3.6841 -3.3620 -1.1186 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072254967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:06 Heat of formation + Delta-G solvation = 91.889003 kcal Electronic energy + Delta-G solvation = -32677.492278 eV Core-core repulsion = 28505.830920 eV Total energy + Delta-G solvation = -4171.661357 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.20812 -40.60234 -39.38514 -37.12065 -36.37681 -34.18259 -33.38525 -32.14235 -31.35232 -30.08184 -29.21078 -28.89368 -27.95458 -26.04690 -24.94719 -23.75743 -22.22463 -21.79202 -21.59940 -21.15684 -20.68696 -19.93172 -18.50950 -17.84068 -17.48556 -16.62878 -15.96289 -15.56205 -15.39623 -15.05497 -14.88507 -14.65201 -14.55846 -14.40267 -14.07506 -13.93677 -13.73791 -13.64456 -13.48672 -13.19773 -13.09811 -12.90300 -12.63965 -12.52241 -12.04400 -11.78069 -11.69321 -11.49035 -11.31323 -11.20205 -11.10772 -10.96175 -10.86593 -10.76676 -10.54479 -10.14571 -10.04805 -9.75317 -9.43445 -9.27694 -8.75380 -8.60086 -8.42657 -7.39569 -7.12803 -6.82541 -4.59744 1.93957 1.98077 2.38837 2.52292 2.80372 2.88919 2.91934 3.10686 3.12647 3.37050 3.60311 3.87813 4.27357 4.43283 4.51841 4.58254 4.62257 4.66577 4.74620 4.84055 4.91157 5.06365 5.26275 5.32636 5.35292 5.53197 5.55212 5.60777 5.62797 5.65312 5.70754 5.73340 5.82088 5.97651 6.02038 6.11989 6.16011 6.23031 6.27994 6.53508 6.65083 6.65320 6.73887 6.80723 6.85747 6.91821 7.10591 7.22631 7.31347 7.37307 7.66239 7.80671 7.85623 8.00357 8.17583 8.64966 8.80393 9.08226 10.01131 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.002997 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.674026 B = 9340.185950 C =11162.598248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.045 3.955 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.345 4.345 8 H 0.111 0.889 9 N -0.272 5.272 10 C 0.125 3.875 11 C -0.314 4.314 12 C 0.614 3.386 13 O -0.554 6.554 14 N -0.613 5.613 15 C 0.098 3.902 16 C -0.130 4.130 17 C -0.125 4.125 18 C 0.121 3.879 19 H 0.104 0.896 20 N -0.449 5.449 21 C -0.053 4.053 22 C -0.035 4.035 23 N -0.498 5.498 24 C 0.183 3.817 25 C 0.111 3.889 26 C -0.063 4.063 27 C -0.086 4.086 28 C -0.156 4.156 29 C -0.139 4.139 30 C -0.101 4.101 31 C 0.048 3.952 32 H 0.285 0.715 33 H 0.180 0.820 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.172 0.828 41 H 0.167 0.833 42 H 0.201 0.799 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -4.191 10.314 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.473 4.473 8 H 0.128 0.872 9 N 0.067 4.933 10 C -0.017 4.017 11 C -0.324 4.324 12 C 0.407 3.593 13 O -0.432 6.432 14 N -0.348 5.348 15 C -0.025 4.025 16 C -0.169 4.169 17 C -0.163 4.163 18 C 0.017 3.983 19 H 0.122 0.878 20 N -0.131 5.131 21 C -0.187 4.187 22 C -0.182 4.182 23 N -0.216 5.216 24 C -0.099 4.099 25 C -0.014 4.014 26 C -0.068 4.068 27 C -0.105 4.105 28 C -0.176 4.176 29 C -0.158 4.158 30 C -0.121 4.121 31 C -0.060 4.060 32 H 0.096 0.904 33 H 0.196 0.804 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.189 0.811 41 H 0.185 0.815 42 H 0.217 0.783 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.137 -3.830 10.103 10.865 hybrid contribution 1.075 0.611 -0.431 1.309 sum -0.062 -3.219 9.673 10.195 Atomic orbital electron populations 1.69800 1.06372 1.29623 1.41896 1.25557 0.95737 1.00764 0.94394 0.85732 0.79100 0.78816 0.79771 1.19101 1.20049 1.18950 1.19915 0.94350 0.81840 1.51163 0.87163 1.40001 1.14237 1.03876 1.35140 1.22208 0.88231 0.95625 0.95638 1.19215 0.99110 0.93323 1.20712 1.17536 0.83584 0.78955 0.79201 1.90698 1.53925 1.37127 1.61475 1.47905 1.28428 1.42347 1.16117 1.21914 0.97968 0.90176 0.92427 1.21841 0.96687 1.02075 0.96321 1.21902 0.98059 0.97534 0.98811 1.21933 0.85211 0.98924 0.92251 0.87793 1.45652 1.16419 1.08933 1.42118 1.22771 1.01438 0.88037 1.06422 1.22266 0.94470 0.95862 1.05646 1.70298 1.29367 1.02818 1.19157 1.24886 0.84436 0.99387 1.01236 1.21633 0.88674 0.99550 0.91493 1.18515 0.93978 0.92421 1.01864 1.20274 0.96974 0.93690 0.99532 1.20614 0.95432 0.98329 1.03180 1.20492 0.99557 0.92252 1.03539 1.19939 0.95932 0.95351 1.00850 1.18378 0.97657 0.85344 1.04613 0.90420 0.80367 0.87208 0.91504 0.89797 0.90943 0.90787 0.91001 0.81103 0.81548 0.78265 0.91279 0.88405 0.87429 0.87418 0.87162 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.66 10.85 55.50 0.60 -19.06 16 2 C 0.05 1.01 5.34 -17.49 -0.09 0.91 16 3 Si 0.94 17.02 29.57 -169.99 -5.03 12.00 16 4 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 5 H -0.28 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 7 C -0.35 -8.03 9.90 -14.91 -0.15 -8.18 16 8 H 0.11 2.43 7.86 -52.49 -0.41 2.01 16 9 N -0.27 -6.43 2.89 -59.49 -0.17 -6.60 16 10 C 0.13 2.82 7.50 -16.42 -0.12 2.70 16 11 C -0.31 -6.91 5.33 -103.24 -0.55 -7.46 16 12 C 0.61 12.56 7.59 -12.74 -0.10 12.46 16 13 O -0.55 -12.91 16.54 5.21 0.09 -12.83 16 14 N -0.61 -9.60 2.98 -174.47 -0.52 -10.12 16 15 C 0.10 1.31 5.81 -3.93 -0.02 1.28 16 16 C -0.13 -1.33 6.06 -26.83 -0.16 -1.50 16 17 C -0.12 -1.14 5.20 -26.69 -0.14 -1.28 16 18 C 0.12 1.28 3.01 -67.81 -0.20 1.08 16 19 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 20 N -0.45 -4.90 2.62 -111.33 -0.29 -5.19 16 21 C -0.05 -0.57 11.54 -16.56 -0.19 -0.76 16 22 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 23 N -0.50 -6.71 11.25 -14.67 -0.17 -6.88 16 24 C 0.18 2.11 11.49 -90.37 -1.04 1.07 16 25 C 0.11 1.46 5.82 -3.71 -0.02 1.44 16 26 C -0.06 -1.41 6.36 -104.92 -0.67 -2.07 16 27 C -0.09 -1.74 10.09 -39.36 -0.40 -2.14 16 28 C -0.16 -2.80 10.03 -39.55 -0.40 -3.20 16 29 C -0.14 -2.46 10.02 -39.55 -0.40 -2.86 16 30 C -0.10 -2.02 9.93 -39.42 -0.39 -2.41 16 31 C 0.05 1.09 6.73 -83.84 -0.56 0.53 16 32 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 33 H 0.18 3.97 5.77 -52.48 -0.30 3.66 16 34 H 0.11 1.74 4.55 -51.93 -0.24 1.50 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.63 7.98 -51.93 -0.41 0.21 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.07 0.83 7.81 -51.93 -0.41 0.42 16 44 H 0.10 1.51 7.03 -51.93 -0.36 1.14 16 45 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 46 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 47 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 48 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -29.47 393.98 -11.71 -41.17 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.34 Total: 12.58 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -5.81 Total: -11.01 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.55 Total: -47.84 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.47 -11.71 -41.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072254967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.059 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds