Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34945 * 126.03577 * 2 1 4 4 C 1.35323 * 107.74448 * 179.75328 * 3 2 1 5 5 C 1.50697 * 126.04096 * 180.27546 * 4 3 2 6 6 H 1.09002 * 109.87678 * 19.46499 * 5 4 3 7 7 C 1.54330 * 109.88357 * 258.45095 * 5 4 3 8 8 C 1.55154 * 102.94134 * 218.38961 * 7 5 4 9 9 C 1.54916 * 101.58428 * 35.50056 * 8 7 5 10 10 N 1.47022 * 109.88204 * 140.48020 * 5 4 3 11 11 C 1.34769 * 125.64978 * 298.30997 * 10 5 4 12 12 O 1.21677 * 119.99934 * 354.39053 * 11 10 5 13 13 C 1.46933 * 120.00068 * 174.38078 * 11 10 5 14 14 C 1.36383 * 126.72925 * 353.22585 * 13 11 10 15 15 N 1.35887 * 109.73496 * 179.97438 * 14 13 11 16 16 C 1.37129 * 124.84054 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99691 * 161.31691 * 16 15 14 18 18 C 1.38983 * 119.99669 * 341.31992 * 16 15 14 19 19 N 1.31339 * 119.99568 * 163.46014 * 18 16 15 20 20 Si 1.86797 * 120.00231 * 343.45146 * 18 16 15 21 21 H 1.48496 * 109.46914 * 91.87944 * 20 18 16 22 22 H 1.48504 * 109.47032 * 211.87569 * 20 18 16 23 23 H 1.48496 * 109.47277 * 331.87459 * 20 18 16 24 24 C 1.38309 * 110.31863 * 0.02562 * 15 14 13 25 25 C 1.39008 * 133.16064 * 180.02562 * 24 15 14 26 26 C 1.37900 * 119.92880 * 179.24377 * 25 24 15 27 27 C 1.38676 * 120.61200 * 0.61064 * 26 25 24 28 28 C 1.37890 * 120.28632 * 359.60454 * 27 26 25 29 29 C 1.39187 * 119.67550 * 359.97438 * 28 27 26 30 30 C 1.39865 * 107.91631 * 0.39816 * 4 3 2 31 31 N 1.30830 * 108.20559 * 359.59702 * 30 4 3 32 32 H 1.09006 * 109.47033 * 270.02389 * 1 2 3 33 33 H 1.09002 * 109.47391 * 30.02238 * 1 2 3 34 34 H 1.09001 * 109.47475 * 150.02481 * 1 2 3 35 35 H 1.08004 * 126.12992 * 0.02562 * 3 2 1 36 36 H 1.09000 * 110.71531 * 336.74792 * 7 5 4 37 37 H 1.08997 * 110.71822 * 99.84644 * 7 5 4 38 38 H 1.08998 * 111.00793 * 153.57266 * 8 7 5 39 39 H 1.08996 * 111.00550 * 277.38884 * 8 7 5 40 40 H 1.08994 * 110.36630 * 81.82673 * 9 8 7 41 41 H 1.08996 * 110.36861 * 204.04091 * 9 8 7 42 42 H 1.08008 * 125.12928 * 0.02562 * 14 13 11 43 43 H 0.97004 * 120.00067 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.03250 * 359.97162 * 25 24 15 45 45 H 1.08003 * 119.69286 * 180.20911 * 26 25 24 46 46 H 1.07993 * 119.86035 * 179.62281 * 27 26 25 47 47 H 1.07992 * 120.16200 * 179.97438 * 28 27 26 48 48 H 1.08010 * 125.89640 * 179.86985 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5437 0.6665 0.0055 5 6 4.7679 1.5452 0.0134 6 1 4.5037 2.5458 0.3558 7 6 5.3709 1.6181 -1.4053 8 6 6.8986 1.6014 -1.1349 9 6 6.9876 0.6550 0.0883 10 7 5.7916 0.9685 0.8972 11 6 5.6592 0.7616 2.2223 12 8 4.6641 1.1533 2.8028 13 6 6.7164 0.0630 2.9661 14 6 7.8192 -0.5432 2.4404 15 7 8.5670 -1.0813 3.4393 16 6 9.7431 -1.7627 3.2575 17 1 10.4238 -1.8953 4.0855 18 6 10.0590 -2.2825 2.0079 19 7 11.2935 -2.6412 1.7389 20 14 8.7278 -2.4713 0.7111 21 1 8.6788 -1.2481 -0.1296 22 1 9.0322 -3.6472 -0.1432 23 1 7.4143 -2.6686 1.3751 24 6 7.9728 -0.8438 4.6654 25 6 8.3208 -1.1728 5.9704 26 6 7.5167 -0.7756 7.0179 27 6 6.3529 -0.0592 6.7825 28 6 5.9890 0.2725 5.4945 29 6 6.7963 -0.1148 4.4289 30 6 3.5346 -0.7321 -0.0002 31 7 2.2891 -1.1327 -0.0001 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5134 35 1 1.9281 2.1194 0.0004 36 1 5.0742 0.7510 -1.9954 37 1 5.0747 2.5414 -1.9032 38 1 7.4416 1.1913 -1.9864 39 1 7.2622 2.5982 -0.8856 40 1 6.9662 -0.3857 -0.2349 41 1 7.8948 0.8559 0.6582 42 1 8.0620 -0.5880 1.3889 43 1 11.5139 -3.0043 0.8668 44 1 9.2261 -1.7287 6.1646 45 1 7.7925 -1.0304 8.0306 46 1 5.7289 0.2405 7.6114 47 1 5.0820 0.8301 5.3134 48 1 4.4054 -1.3711 0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072255003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = 131.182049 kcal Electronic energy + Delta-G solvation = -33369.137529 eV Core-core repulsion = 29199.180046 eV Total energy + Delta-G solvation = -4169.957483 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.24626 -40.69580 -39.10878 -36.74626 -36.42671 -33.50977 -33.24626 -31.88629 -30.99726 -30.96175 -29.26138 -28.64285 -27.76353 -26.20986 -25.35920 -23.90382 -22.01768 -21.60633 -21.34911 -20.96242 -20.63153 -19.92376 -18.70828 -17.67543 -16.95589 -16.50893 -16.12880 -15.88016 -15.39496 -15.30648 -14.94625 -14.38955 -14.26456 -14.20009 -13.79005 -13.68006 -13.54532 -13.26867 -13.19047 -12.92662 -12.85292 -12.75453 -12.67485 -12.57498 -12.22080 -12.10235 -11.82855 -11.50140 -11.38413 -11.17391 -10.95671 -10.88364 -10.77333 -10.67938 -10.43265 -10.18447 -10.03893 -9.43523 -9.31153 -9.15767 -8.80387 -8.39048 -8.11327 -7.49250 -7.09337 -7.05333 -4.54633 1.79159 1.96748 2.33690 2.57570 2.65570 2.85037 2.91334 2.94022 3.02906 3.51390 3.64324 4.03548 4.12038 4.48178 4.60991 4.63460 4.74890 4.83611 4.86342 4.99070 5.01037 5.17351 5.24910 5.35839 5.39445 5.42496 5.52328 5.65889 5.69464 5.75940 5.77369 5.78180 5.84680 5.91714 5.98498 6.07233 6.10641 6.16692 6.32019 6.36780 6.52604 6.57227 6.73665 6.79221 6.89465 7.02081 7.07021 7.22248 7.36251 7.44815 7.61413 7.78184 7.79230 7.98875 8.11493 8.58441 8.83902 9.02224 9.99005 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.004183 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.434273 B = 6692.488865 C = 8434.305772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.381 5.381 3 C 0.064 3.936 4 C -0.230 4.230 5 C 0.220 3.780 6 H 0.077 0.923 7 C -0.121 4.121 8 C -0.133 4.133 9 C 0.085 3.915 10 N -0.618 5.618 11 C 0.618 3.382 12 O -0.553 6.553 13 C -0.281 4.281 14 C 0.026 3.974 15 N -0.269 5.269 16 C -0.343 4.343 17 H 0.128 0.872 18 C 0.070 3.930 19 N -0.823 5.823 20 Si 0.871 3.129 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.244 1.244 24 C 0.050 3.950 25 C -0.096 4.096 26 C -0.136 4.136 27 C -0.153 4.153 28 C -0.079 4.079 29 C -0.056 4.056 30 C 0.069 3.931 31 N -0.300 5.300 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.171 0.829 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.164 0.836 43 H 0.289 0.711 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.119 0.881 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 7.373 -7.600 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.163 5.163 3 C -0.082 4.082 4 C -0.242 4.242 5 C 0.115 3.885 6 H 0.095 0.905 7 C -0.160 4.160 8 C -0.171 4.171 9 C -0.038 4.038 10 N -0.354 5.354 11 C 0.413 3.587 12 O -0.432 6.432 13 C -0.292 4.292 14 C -0.115 4.115 15 N 0.071 4.929 16 C -0.470 4.470 17 H 0.145 0.855 18 C -0.143 4.143 19 N -0.452 5.452 20 Si 0.697 3.303 21 H -0.180 1.180 22 H -0.205 1.205 23 H -0.168 1.168 24 C -0.057 4.057 25 C -0.116 4.116 26 C -0.155 4.155 27 C -0.172 4.172 28 C -0.097 4.097 29 C -0.060 4.060 30 C -0.117 4.117 31 N -0.121 5.121 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.188 0.812 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.180 0.820 43 H 0.100 0.900 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.137 0.863 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.069 6.252 -7.328 16.235 hybrid contribution 0.299 0.271 -0.710 0.817 sum -12.770 6.523 -8.038 16.439 Atomic orbital electron populations 1.21778 0.74617 1.04020 1.03230 1.48378 1.06382 1.03915 1.57622 1.22141 0.90651 0.93158 1.02270 1.20238 0.94238 0.94176 1.15547 1.19548 0.84911 0.94704 0.89370 0.90510 1.22697 0.95002 1.02891 0.95372 1.22803 0.96269 1.00364 0.97690 1.22889 0.89697 0.98766 0.92407 1.48377 1.15106 1.64953 1.06914 1.16911 0.85416 0.77624 0.78773 1.90671 1.31872 1.53075 1.67619 1.19195 1.00533 1.17372 0.92057 1.22247 0.94235 1.00932 0.94063 1.40231 1.15498 1.33768 1.03417 1.19643 0.93859 1.33668 0.99870 0.85489 1.25323 0.96889 0.94489 0.97615 1.69630 1.17139 1.34641 1.23811 0.87071 0.83068 0.78991 0.81161 1.17974 1.20454 1.16806 1.18257 0.94898 1.05340 0.87247 1.20001 1.00334 1.01880 0.89400 1.20552 0.96029 1.01606 0.97350 1.20712 0.97968 1.02574 0.95960 1.20445 0.98756 0.99587 0.90957 1.18535 0.94917 1.01064 0.91521 1.23585 0.94819 0.94632 0.98673 1.77331 1.01690 1.08085 1.25020 0.90952 0.89739 0.89580 0.81210 0.90491 0.90152 0.89920 0.90284 0.91832 0.89529 0.81969 0.89976 0.86712 0.86881 0.87169 0.86284 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.87 11.47 59.84 0.69 1.56 16 2 N -0.38 -5.08 4.01 -68.16 -0.27 -5.36 16 3 C 0.06 0.83 11.40 -17.22 -0.20 0.63 16 4 C -0.23 -3.42 4.31 -105.05 -0.45 -3.87 16 5 C 0.22 3.09 3.25 -68.10 -0.22 2.87 16 6 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 7 C -0.12 -1.29 6.47 -24.89 -0.16 -1.45 16 8 C -0.13 -1.49 7.08 -24.58 -0.17 -1.66 16 9 C 0.09 1.32 4.62 -2.34 -0.01 1.31 16 10 N -0.62 -10.74 2.83 -165.49 -0.47 -11.21 16 11 C 0.62 13.25 7.57 -12.74 -0.10 13.15 16 12 O -0.55 -12.97 16.17 5.21 0.08 -12.88 16 13 C -0.28 -6.46 6.21 -103.24 -0.64 -7.11 16 14 C 0.03 0.60 6.65 -16.42 -0.11 0.49 16 15 N -0.27 -6.57 2.78 -59.49 -0.17 -6.73 16 16 C -0.34 -8.70 10.36 -14.91 -0.15 -8.85 16 17 H 0.13 3.33 8.06 -52.49 -0.42 2.91 16 18 C 0.07 1.72 5.46 -17.49 -0.10 1.63 16 19 N -0.82 -20.68 13.95 55.50 0.77 -19.90 16 20 Si 0.87 18.28 23.61 -169.99 -4.01 14.27 16 21 H -0.25 -4.61 5.15 56.52 0.29 -4.32 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 23 H -0.24 -5.45 6.55 56.52 0.37 -5.08 16 24 C 0.05 1.18 6.73 -83.84 -0.56 0.61 16 25 C -0.10 -2.00 9.93 -39.42 -0.39 -2.40 16 26 C -0.14 -2.47 10.02 -39.54 -0.40 -2.87 16 27 C -0.15 -2.82 10.03 -39.55 -0.40 -3.22 16 28 C -0.08 -1.67 9.86 -39.36 -0.39 -2.06 16 29 C -0.06 -1.30 6.27 -104.92 -0.66 -1.96 16 30 C 0.07 1.15 11.67 -17.37 -0.20 0.95 16 31 N -0.30 -4.99 12.57 30.62 0.39 -4.61 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.08 0.81 7.84 -51.93 -0.41 0.41 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.00 5.80 -51.93 -0.30 0.70 16 41 H 0.09 1.45 5.95 -51.93 -0.31 1.14 16 42 H 0.16 3.41 0.89 -52.48 -0.05 3.37 16 43 H 0.29 6.62 8.31 -40.82 -0.34 6.28 16 44 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 45 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.12 2.50 7.47 -52.49 -0.39 2.10 16 48 H 0.17 2.86 8.06 -52.48 -0.42 2.44 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -32.05 385.73 -8.72 -40.76 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.23 Total: 12.10 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -4.62 Total: -12.24 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.25 Total: -47.82 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.01 Total: 14.27 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.05 -8.72 -40.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072255003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.946 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds