Wall clock time and date at job start Tue Mar 31 2020 05:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34945 * 126.03577 * 2 1 4 4 C 1.35323 * 107.74448 * 179.75328 * 3 2 1 5 5 C 1.50697 * 126.04096 * 180.27546 * 4 3 2 6 6 H 1.09002 * 109.87678 * 19.46499 * 5 4 3 7 7 C 1.54330 * 109.88357 * 258.45095 * 5 4 3 8 8 C 1.55154 * 102.94134 * 218.38961 * 7 5 4 9 9 C 1.54916 * 101.58428 * 35.50056 * 8 7 5 10 10 N 1.47022 * 109.88204 * 140.48020 * 5 4 3 11 11 C 1.34769 * 125.64978 * 298.30997 * 10 5 4 12 12 O 1.21677 * 119.99934 * 354.39053 * 11 10 5 13 13 C 1.46933 * 120.00068 * 174.38078 * 11 10 5 14 14 C 1.36383 * 126.72925 * 353.22585 * 13 11 10 15 15 N 1.35887 * 109.73496 * 179.97438 * 14 13 11 16 16 C 1.37129 * 124.84054 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99691 * 161.31691 * 16 15 14 18 18 C 1.38983 * 119.99669 * 341.31992 * 16 15 14 19 19 N 1.31339 * 119.99568 * 163.46014 * 18 16 15 20 20 Si 1.86797 * 120.00231 * 343.45146 * 18 16 15 21 21 H 1.48496 * 109.46914 * 91.87944 * 20 18 16 22 22 H 1.48504 * 109.47032 * 211.87569 * 20 18 16 23 23 H 1.48496 * 109.47277 * 331.87459 * 20 18 16 24 24 C 1.38309 * 110.31863 * 0.02562 * 15 14 13 25 25 C 1.39008 * 133.16064 * 180.02562 * 24 15 14 26 26 C 1.37900 * 119.92880 * 179.24377 * 25 24 15 27 27 C 1.38676 * 120.61200 * 0.61064 * 26 25 24 28 28 C 1.37890 * 120.28632 * 359.60454 * 27 26 25 29 29 C 1.39187 * 119.67550 * 359.97438 * 28 27 26 30 30 C 1.39865 * 107.91631 * 0.39816 * 4 3 2 31 31 N 1.30830 * 108.20559 * 359.59702 * 30 4 3 32 32 H 1.09006 * 109.47033 * 270.02389 * 1 2 3 33 33 H 1.09002 * 109.47391 * 30.02238 * 1 2 3 34 34 H 1.09001 * 109.47475 * 150.02481 * 1 2 3 35 35 H 1.08004 * 126.12992 * 0.02562 * 3 2 1 36 36 H 1.09000 * 110.71531 * 336.74792 * 7 5 4 37 37 H 1.08997 * 110.71822 * 99.84644 * 7 5 4 38 38 H 1.08998 * 111.00793 * 153.57266 * 8 7 5 39 39 H 1.08996 * 111.00550 * 277.38884 * 8 7 5 40 40 H 1.08994 * 110.36630 * 81.82673 * 9 8 7 41 41 H 1.08996 * 110.36861 * 204.04091 * 9 8 7 42 42 H 1.08008 * 125.12928 * 0.02562 * 14 13 11 43 43 H 0.97004 * 120.00067 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.03250 * 359.97162 * 25 24 15 45 45 H 1.08003 * 119.69286 * 180.20911 * 26 25 24 46 46 H 1.07993 * 119.86035 * 179.62281 * 27 26 25 47 47 H 1.07992 * 120.16200 * 179.97438 * 28 27 26 48 48 H 1.08010 * 125.89640 * 179.86985 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5437 0.6665 0.0055 5 6 4.7679 1.5452 0.0134 6 1 4.5037 2.5458 0.3558 7 6 5.3709 1.6181 -1.4053 8 6 6.8986 1.6014 -1.1349 9 6 6.9876 0.6550 0.0883 10 7 5.7916 0.9685 0.8972 11 6 5.6592 0.7616 2.2223 12 8 4.6641 1.1533 2.8028 13 6 6.7164 0.0630 2.9661 14 6 7.8192 -0.5432 2.4404 15 7 8.5670 -1.0813 3.4393 16 6 9.7431 -1.7627 3.2575 17 1 10.4238 -1.8953 4.0855 18 6 10.0590 -2.2825 2.0079 19 7 11.2935 -2.6412 1.7389 20 14 8.7278 -2.4713 0.7111 21 1 8.6788 -1.2481 -0.1296 22 1 9.0322 -3.6472 -0.1432 23 1 7.4143 -2.6686 1.3751 24 6 7.9728 -0.8438 4.6654 25 6 8.3208 -1.1728 5.9704 26 6 7.5167 -0.7756 7.0179 27 6 6.3529 -0.0592 6.7825 28 6 5.9890 0.2725 5.4945 29 6 6.7963 -0.1148 4.4289 30 6 3.5346 -0.7321 -0.0002 31 7 2.2891 -1.1327 -0.0001 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5134 35 1 1.9281 2.1194 0.0004 36 1 5.0742 0.7510 -1.9954 37 1 5.0747 2.5414 -1.9032 38 1 7.4416 1.1913 -1.9864 39 1 7.2622 2.5982 -0.8856 40 1 6.9662 -0.3857 -0.2349 41 1 7.8948 0.8559 0.6582 42 1 8.0620 -0.5880 1.3889 43 1 11.5139 -3.0043 0.8668 44 1 9.2261 -1.7287 6.1646 45 1 7.7925 -1.0304 8.0306 46 1 5.7289 0.2405 7.6114 47 1 5.0820 0.8301 5.3134 48 1 4.4054 -1.3711 0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072255003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:16 Heat of formation + Delta-G solvation = 112.453394 kcal Electronic energy + Delta-G solvation = -33369.949664 eV Core-core repulsion = 29199.180046 eV Total energy + Delta-G solvation = -4170.769618 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.52445 -42.19329 -40.45982 -38.25576 -37.99263 -35.30193 -34.25456 -33.41342 -32.40592 -32.08772 -30.94035 -29.99706 -29.01149 -27.19133 -27.09617 -25.32029 -23.58906 -23.03443 -22.47544 -22.27812 -21.95383 -21.18340 -20.09341 -19.47772 -18.40506 -17.69878 -17.57479 -17.39060 -16.88010 -16.39134 -16.31303 -15.98172 -15.82638 -15.38883 -15.21955 -15.16722 -14.86360 -14.72001 -14.58486 -14.40812 -14.25644 -13.94333 -13.73010 -13.66124 -13.47151 -13.30669 -13.21038 -13.10329 -12.85239 -12.44867 -12.37681 -12.25403 -12.13772 -11.83427 -11.79502 -11.71560 -11.46297 -11.17428 -10.79396 -10.53348 -10.37406 -9.69974 -9.25760 -9.18064 -8.94215 -8.77840 -6.46283 0.11991 0.71100 0.93125 0.95643 1.15143 1.23444 1.30194 1.66765 1.72532 1.88466 2.16590 2.33980 2.44466 2.80330 3.15323 3.57416 3.64533 3.66444 3.73539 3.98271 3.99973 4.07886 4.13784 4.25515 4.29531 4.29999 4.37840 4.40983 4.42430 4.46422 4.56777 4.66620 4.71719 4.73797 4.80504 4.87871 4.95109 4.98213 5.02234 5.06936 5.13080 5.13698 5.28749 5.41008 5.54472 5.59410 5.63693 5.67281 5.75373 5.93394 6.00801 6.16755 6.26907 6.60788 6.69409 6.73932 7.03391 7.41284 8.17164 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.004183 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.434273 B = 6692.488865 C = 8434.305772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.378 5.378 3 C 0.074 3.926 4 C -0.250 4.250 5 C 0.213 3.787 6 H 0.083 0.917 7 C -0.108 4.108 8 C -0.122 4.122 9 C 0.071 3.929 10 N -0.613 5.613 11 C 0.614 3.386 12 O -0.581 6.581 13 C -0.296 4.296 14 C 0.026 3.974 15 N -0.289 5.289 16 C -0.366 4.366 17 H 0.103 0.897 18 C 0.040 3.960 19 N -0.856 5.856 20 Si 0.912 3.088 21 H -0.211 1.211 22 H -0.267 1.267 23 H -0.271 1.271 24 C 0.024 3.976 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.138 4.138 28 C -0.095 4.095 29 C -0.086 4.086 30 C 0.047 3.953 31 N -0.337 5.337 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.211 0.789 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.178 0.822 43 H 0.298 0.702 44 H 0.118 0.882 45 H 0.157 0.843 46 H 0.153 0.847 47 H 0.117 0.883 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.296 9.473 -8.682 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.160 5.160 3 C -0.073 4.073 4 C -0.262 4.262 5 C 0.109 3.891 6 H 0.101 0.899 7 C -0.145 4.145 8 C -0.160 4.160 9 C -0.052 4.052 10 N -0.346 5.346 11 C 0.408 3.592 12 O -0.464 6.464 13 C -0.307 4.307 14 C -0.114 4.114 15 N 0.049 4.951 16 C -0.493 4.493 17 H 0.120 0.880 18 C -0.170 4.170 19 N -0.487 5.487 20 Si 0.735 3.265 21 H -0.135 1.135 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.083 4.083 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.157 4.157 28 C -0.114 4.114 29 C -0.090 4.090 30 C -0.138 4.138 31 N -0.160 5.160 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.108 0.892 35 H 0.228 0.772 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.194 0.806 43 H 0.109 0.891 44 H 0.136 0.864 45 H 0.175 0.825 46 H 0.170 0.830 47 H 0.135 0.865 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.247 8.356 -8.457 19.335 hybrid contribution 0.817 -0.331 -0.184 0.901 sum -14.430 8.025 -8.641 18.636 Atomic orbital electron populations 1.22196 0.71854 1.06238 1.04246 1.48785 1.07941 1.03197 1.56113 1.22755 0.89903 0.94621 1.00039 1.20387 0.95528 0.93414 1.16863 1.19890 0.84178 0.94355 0.90635 0.89921 1.22697 0.93956 1.04763 0.93125 1.22835 0.97184 0.99875 0.96085 1.23084 0.88321 0.99890 0.93876 1.48366 1.16689 1.63568 1.06021 1.16769 0.84616 0.77600 0.80226 1.90624 1.32588 1.54383 1.68755 1.19652 1.01019 1.17387 0.92671 1.22566 0.93892 1.00328 0.94596 1.40270 1.15744 1.34947 1.04179 1.19484 0.94471 1.35468 0.99868 0.87975 1.25866 0.98421 0.93850 0.98905 1.69666 1.18301 1.35779 1.24936 0.86480 0.79197 0.81099 0.79690 1.13498 1.19333 1.19623 1.18773 0.95423 1.05990 0.88074 1.20321 1.01405 1.02873 0.89233 1.21056 0.94719 0.99227 0.98547 1.21188 0.97971 1.00598 0.95921 1.20616 0.98681 1.00324 0.91770 1.18942 0.95631 1.01997 0.92452 1.23523 0.94679 0.95649 0.99998 1.77230 1.02176 1.10208 1.26395 0.90468 0.85833 0.89155 0.77195 0.90355 0.86667 0.87484 0.89028 0.92347 0.91217 0.80576 0.89116 0.86375 0.82511 0.82982 0.86547 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 11.47 127.77 1.47 2.78 16 2 N -0.38 -9.43 4.01 -369.56 -1.48 -10.91 16 3 C 0.07 1.73 11.40 83.54 0.95 2.68 16 4 C -0.25 -7.13 4.31 -20.14 -0.09 -7.21 16 5 C 0.21 5.61 3.25 44.60 0.14 5.75 16 6 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 7 C -0.11 -1.91 6.47 31.78 0.21 -1.70 16 8 C -0.12 -2.34 7.08 31.99 0.23 -2.11 16 9 C 0.07 2.12 4.62 86.79 0.40 2.52 16 10 N -0.61 -21.14 2.83 -795.72 -2.25 -23.39 16 11 C 0.61 26.93 7.57 86.52 0.66 27.59 16 12 O -0.58 -27.75 16.17 -4.27 -0.07 -27.82 16 13 C -0.30 -14.17 6.21 -18.97 -0.12 -14.29 16 14 C 0.03 1.24 6.65 83.63 0.56 1.80 16 15 N -0.29 -14.89 2.78 -342.12 -0.95 -15.84 16 16 C -0.37 -19.68 10.36 84.04 0.87 -18.81 16 17 H 0.10 5.79 8.06 -2.91 -0.02 5.77 16 18 C 0.04 2.04 5.46 84.95 0.46 2.50 16 19 N -0.86 -44.44 13.95 21.66 0.30 -44.14 16 20 Si 0.91 38.39 23.61 68.60 1.62 40.01 16 21 H -0.21 -7.32 5.15 99.48 0.51 -6.80 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.27 -12.55 6.55 99.48 0.65 -11.89 16 24 C 0.02 1.19 6.73 38.83 0.26 1.45 16 25 C -0.12 -5.00 9.93 22.37 0.22 -4.77 16 26 C -0.12 -3.99 10.02 22.29 0.22 -3.76 16 27 C -0.14 -4.78 10.03 22.29 0.22 -4.56 16 28 C -0.10 -4.03 9.86 22.42 0.22 -3.81 16 29 C -0.09 -4.14 6.27 -20.06 -0.13 -4.27 16 30 C 0.05 1.57 11.67 85.24 1.00 2.57 16 31 N -0.34 -11.25 12.57 -57.02 -0.72 -11.97 16 32 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.21 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.08 1.42 7.84 -2.39 -0.02 1.40 16 37 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.80 5.80 -2.39 -0.01 1.78 16 41 H 0.07 2.32 5.95 -2.39 -0.01 2.31 16 42 H 0.18 7.59 0.89 -2.91 0.00 7.58 16 43 H 0.30 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 45 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 46 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 47 H 0.12 4.92 7.47 -2.91 -0.02 4.90 16 48 H 0.16 5.53 8.06 -2.91 -0.02 5.51 16 Total: -1.00 -75.98 385.73 4.96 -71.02 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: 0.75 Total: 38.71 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 7.76 Total: -15.66 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -5.10 Total: -106.26 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.07 Total: -27.82 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.62 Total: 40.01 kcal Total: -75.98 4.96 -71.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072255003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.475 kcal (2) G-P(sol) polarization free energy of solvation -75.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds