Wall clock time and date at job start Tue Mar 31 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34947 * 126.03608 * 2 1 4 4 C 1.35321 * 107.74455 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.03723 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.87865 * 341.01883 * 5 4 3 7 7 C 1.54326 * 109.88264 * 102.19363 * 5 4 3 8 8 C 1.55156 * 102.94507 * 141.60812 * 7 5 4 9 9 C 1.54912 * 101.57880 * 324.49937 * 8 7 5 10 10 N 1.47025 * 109.88294 * 219.99895 * 5 4 3 11 11 C 1.34773 * 125.64498 * 61.68064 * 10 5 4 12 12 O 1.21673 * 120.00419 * 355.16330 * 11 10 5 13 13 C 1.46936 * 120.00013 * 175.16379 * 11 10 5 14 14 C 1.36391 * 126.72629 * 30.00197 * 13 11 10 15 15 N 1.35884 * 109.73360 * 179.86813 * 14 13 11 16 16 C 1.37126 * 124.84153 * 180.16660 * 15 14 13 17 17 H 1.08003 * 120.00157 * 201.36238 * 16 15 14 18 18 C 1.38980 * 119.99865 * 21.36317 * 16 15 14 19 19 N 1.31334 * 120.00233 * 10.98500 * 18 16 15 20 20 Si 1.86802 * 119.99985 * 190.97860 * 18 16 15 21 21 H 1.48497 * 109.46998 * 90.00225 * 20 18 16 22 22 H 1.48502 * 109.47214 * 210.00408 * 20 18 16 23 23 H 1.48506 * 109.47039 * 330.00212 * 20 18 16 24 24 C 1.38320 * 110.31692 * 0.41063 * 15 14 13 25 25 C 1.39000 * 133.15661 * 179.80543 * 24 15 14 26 26 C 1.37902 * 119.92934 * 180.02562 * 25 24 15 27 27 C 1.38676 * 120.60954 * 359.95568 * 26 25 24 28 28 C 1.37893 * 120.28718 * 0.02562 * 27 26 25 29 29 C 1.39176 * 119.67684 * 0.02562 * 28 27 26 30 30 C 1.39865 * 107.92197 * 0.02562 * 4 3 2 31 31 N 1.30836 * 108.20048 * 0.26394 * 30 4 3 32 32 H 1.09007 * 109.47160 * 90.00463 * 1 2 3 33 33 H 1.08998 * 109.47490 * 210.00078 * 1 2 3 34 34 H 1.09004 * 109.47467 * 330.00225 * 1 2 3 35 35 H 1.08001 * 126.13151 * 0.03575 * 3 2 1 36 36 H 1.09003 * 110.72202 * 259.97177 * 7 5 4 37 37 H 1.09000 * 110.72038 * 23.24535 * 7 5 4 38 38 H 1.09002 * 111.00417 * 206.42406 * 8 7 5 39 39 H 1.08999 * 111.03420 * 82.58374 * 8 7 5 40 40 H 1.08997 * 110.36584 * 278.16288 * 9 8 7 41 41 H 1.09008 * 110.45718 * 155.89256 * 9 8 7 42 42 H 1.08001 * 125.13152 * 0.02562 * 14 13 11 43 43 H 0.97001 * 120.00005 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.04111 * 359.97438 * 25 24 15 45 45 H 1.08001 * 119.69574 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.85799 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.16020 * 180.02562 * 28 27 26 48 48 H 1.07997 * 125.89850 * 180.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5436 0.6665 0.0006 5 6 4.7679 1.5453 0.0013 6 1 4.5039 2.5490 -0.3320 7 6 5.3723 1.6021 1.4202 8 6 6.8997 1.5884 1.1481 9 6 6.9874 0.6560 -0.0858 10 7 5.7922 0.9766 -0.8869 11 6 5.6604 0.7815 -2.2140 12 8 4.5951 1.0028 -2.7586 13 6 6.8032 0.3016 -3.0030 14 6 7.8157 -0.5016 -2.5670 15 7 8.6875 -0.7334 -3.5832 16 6 9.8170 -1.5049 -3.4857 17 1 10.6230 -1.3740 -4.1926 18 6 9.9244 -2.4552 -2.4774 19 7 8.8732 -2.7679 -1.7549 20 14 11.5641 -3.2881 -2.1498 21 1 12.3276 -2.5011 -1.1483 22 1 11.3279 -4.6580 -1.6273 23 1 12.3403 -3.3673 -3.4134 24 6 8.2762 -0.0757 -4.7283 25 6 8.8006 0.0162 -6.0123 26 6 8.1505 0.7670 -6.9690 27 6 6.9735 1.4338 -6.6637 28 6 6.4379 1.3541 -5.3955 29 6 7.0848 0.6006 -4.4205 30 6 3.5346 -0.7321 0.0003 31 7 2.2891 -1.1327 -0.0061 32 1 -0.3634 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3634 0.8900 0.5138 35 1 1.9281 2.1194 0.0005 36 1 5.0792 2.5212 1.9277 37 1 5.0762 0.7285 2.0008 38 1 7.4436 1.1688 1.9944 39 1 7.2636 2.5878 0.9092 40 1 6.9665 -0.3884 0.2256 41 1 7.8931 0.8629 -0.6562 42 1 7.9089 -0.8960 -1.5659 43 1 8.9483 -3.4310 -1.0509 44 1 9.7167 -0.4992 -6.2603 45 1 8.5615 0.8362 -7.9653 46 1 6.4742 2.0181 -7.4224 47 1 5.5210 1.8739 -5.1601 48 1 4.4053 -1.3710 0.0011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072255004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:23 Heat of formation + Delta-G solvation = 112.718066 kcal Electronic energy + Delta-G solvation = -33011.529777 eV Core-core repulsion = 28840.771635 eV Total energy + Delta-G solvation = -4170.758141 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.08492 -40.33196 -38.91600 -36.53683 -36.22575 -33.34340 -33.11052 -31.61501 -30.81219 -30.72005 -28.80550 -28.31470 -27.60075 -26.02846 -25.40292 -23.46638 -21.75728 -21.33563 -21.20903 -20.81976 -20.50886 -19.74194 -18.29808 -17.66937 -16.75008 -16.30331 -15.94420 -15.30647 -15.26488 -15.12172 -14.62901 -14.39680 -14.18504 -13.94454 -13.76228 -13.43697 -13.31633 -13.13858 -13.02952 -12.78516 -12.71214 -12.56905 -12.54844 -12.08621 -11.91881 -11.79435 -11.54755 -11.41061 -11.20601 -11.17472 -10.87522 -10.75106 -10.73454 -10.61960 -10.44637 -10.29357 -9.98833 -9.32132 -9.17082 -8.99878 -8.61366 -8.22261 -7.92943 -7.26314 -7.01754 -6.70185 -4.48644 2.07623 2.10534 2.50938 2.70422 2.87490 2.95748 3.00115 3.03540 3.31409 3.68257 3.73864 4.20124 4.59056 4.64282 4.73717 4.79707 4.92774 4.97133 4.98908 5.09418 5.12718 5.30920 5.35872 5.51204 5.57950 5.68936 5.77442 5.83302 5.85125 5.90903 5.93840 6.02103 6.08730 6.15119 6.24175 6.26217 6.33561 6.43166 6.46192 6.67208 6.78417 6.89301 6.92313 6.97263 7.01719 7.09906 7.20769 7.35443 7.44872 7.52426 7.85233 7.93475 7.97972 8.29063 8.31818 8.78042 9.16858 9.25101 10.11601 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.003607 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.211349 B = 7760.994106 C = 9426.561923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.382 5.382 3 C 0.060 3.940 4 C -0.224 4.224 5 C 0.219 3.781 6 H 0.072 0.928 7 C -0.121 4.121 8 C -0.134 4.134 9 C 0.099 3.901 10 N -0.615 5.615 11 C 0.622 3.378 12 O -0.556 6.556 13 C -0.310 4.310 14 C 0.126 3.874 15 N -0.276 5.276 16 C -0.344 4.344 17 H 0.110 0.890 18 C 0.045 3.955 19 N -0.847 5.847 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.265 1.265 24 C 0.047 3.953 25 C -0.104 4.104 26 C -0.139 4.139 27 C -0.160 4.160 28 C -0.082 4.082 29 C -0.060 4.060 30 C 0.074 3.926 31 N -0.302 5.302 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.168 0.832 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.184 0.816 43 H 0.283 0.717 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 7.312 8.210 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.165 5.165 3 C -0.086 4.086 4 C -0.237 4.237 5 C 0.114 3.886 6 H 0.090 0.910 7 C -0.159 4.159 8 C -0.172 4.172 9 C -0.025 4.025 10 N -0.350 5.350 11 C 0.416 3.584 12 O -0.435 6.435 13 C -0.320 4.320 14 C -0.017 4.017 15 N 0.063 4.937 16 C -0.471 4.471 17 H 0.127 0.873 18 C -0.164 4.164 19 N -0.479 5.479 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.189 1.189 24 C -0.060 4.060 25 C -0.124 4.124 26 C -0.159 4.159 27 C -0.179 4.179 28 C -0.100 4.100 29 C -0.065 4.065 30 C -0.113 4.113 31 N -0.123 5.123 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.186 0.814 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.200 0.800 43 H 0.094 0.906 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.130 0.870 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.535 6.035 7.976 12.523 hybrid contribution 1.196 0.015 0.067 1.198 sum -6.339 6.050 8.044 11.895 Atomic orbital electron populations 1.21746 0.74832 1.03882 1.03105 1.48346 1.06270 1.03968 1.57922 1.22112 0.90773 0.93053 1.02692 1.20227 0.94127 0.94241 1.15058 1.19549 0.85099 0.94518 0.89411 0.90971 1.22679 0.95250 1.02616 0.95348 1.22803 0.95975 1.00434 0.97986 1.22444 0.89629 0.98655 0.91731 1.48334 1.14990 1.64999 1.06698 1.16994 0.86868 0.75694 0.78827 1.90677 1.28622 1.53936 1.70238 1.19385 1.01713 1.16764 0.94130 1.22576 0.88852 0.95915 0.94315 1.40029 1.17257 1.31093 1.05296 1.19954 0.94177 1.16339 1.16662 0.87252 1.25528 0.99536 0.95553 0.95803 1.69805 1.28350 1.30165 1.19550 0.85681 0.79867 0.78394 0.79494 1.19371 1.20109 1.18874 1.18417 0.96583 1.01868 0.89157 1.19914 1.00325 1.01449 0.90717 1.20477 0.96960 1.00433 0.97999 1.20619 0.97659 1.03414 0.96236 1.20353 0.98880 0.98715 0.92072 1.18572 0.94973 1.00383 0.92607 1.23607 0.94786 0.94618 0.98258 1.77322 1.01786 1.08041 1.25190 0.91097 0.89671 0.89856 0.81442 0.90547 0.90537 0.90163 0.90770 0.91369 0.89775 0.79953 0.90584 0.87271 0.87288 0.87524 0.86998 0.80648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.96 11.47 59.84 0.69 1.65 16 2 N -0.38 -5.45 4.01 -68.16 -0.27 -5.73 16 3 C 0.06 0.83 11.40 -17.22 -0.20 0.63 16 4 C -0.22 -3.51 4.08 -105.05 -0.43 -3.94 16 5 C 0.22 3.22 3.32 -68.10 -0.23 3.00 16 6 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.12 -1.33 6.47 -24.90 -0.16 -1.49 16 8 C -0.13 -1.51 7.09 -24.58 -0.17 -1.68 16 9 C 0.10 1.51 5.30 -2.53 -0.01 1.50 16 10 N -0.62 -10.93 2.83 -165.75 -0.47 -11.40 16 11 C 0.62 13.90 7.60 -12.74 -0.10 13.81 16 12 O -0.56 -13.82 16.79 5.21 0.09 -13.74 16 13 C -0.31 -7.43 5.92 -103.24 -0.61 -8.05 16 14 C 0.13 3.03 7.94 -16.42 -0.13 2.90 16 15 N -0.28 -6.93 2.89 -59.49 -0.17 -7.10 16 16 C -0.34 -8.41 9.90 -14.91 -0.15 -8.56 16 17 H 0.11 2.55 7.86 -52.48 -0.41 2.14 16 18 C 0.05 1.04 5.35 -17.49 -0.09 0.95 16 19 N -0.85 -20.25 10.84 55.50 0.60 -19.64 16 20 Si 0.94 17.73 29.57 -169.99 -5.03 12.70 16 21 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 24 C 0.05 1.15 6.73 -83.84 -0.56 0.59 16 25 C -0.10 -2.24 9.93 -39.42 -0.39 -2.63 16 26 C -0.14 -2.66 10.02 -39.54 -0.40 -3.05 16 27 C -0.16 -3.11 10.03 -39.55 -0.40 -3.51 16 28 C -0.08 -1.81 10.09 -39.36 -0.40 -2.20 16 29 C -0.06 -1.47 6.32 -104.93 -0.66 -2.13 16 30 C 0.07 1.28 11.68 -17.37 -0.20 1.08 16 31 N -0.30 -5.29 12.58 30.62 0.39 -4.91 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.85 7.84 -51.93 -0.41 0.44 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.06 7.73 -51.93 -0.40 0.65 16 41 H 0.08 1.42 6.32 -51.92 -0.33 1.09 16 42 H 0.18 4.22 4.28 -52.49 -0.22 3.99 16 43 H 0.28 6.25 8.31 -40.82 -0.34 5.91 16 44 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 46 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 47 H 0.11 2.44 8.05 -52.49 -0.42 2.02 16 48 H 0.18 3.04 8.06 -52.49 -0.42 2.62 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -32.33 399.09 -9.86 -42.19 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -6.40 Total: 12.76 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -4.60 Total: -11.15 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.07 Total: -48.78 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.33 -9.86 -42.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072255004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.907 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds