Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34947 * 126.03608 * 2 1 4 4 C 1.35321 * 107.74455 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.03723 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.87865 * 341.01883 * 5 4 3 7 7 C 1.54326 * 109.88264 * 102.19363 * 5 4 3 8 8 C 1.55156 * 102.94507 * 141.60812 * 7 5 4 9 9 C 1.54912 * 101.57880 * 324.49937 * 8 7 5 10 10 N 1.47025 * 109.88294 * 219.99895 * 5 4 3 11 11 C 1.34773 * 125.64498 * 61.68064 * 10 5 4 12 12 O 1.21673 * 120.00419 * 355.16330 * 11 10 5 13 13 C 1.46936 * 120.00013 * 175.16379 * 11 10 5 14 14 C 1.36391 * 126.72629 * 30.00197 * 13 11 10 15 15 N 1.35884 * 109.73360 * 179.86813 * 14 13 11 16 16 C 1.37126 * 124.84153 * 180.16660 * 15 14 13 17 17 H 1.08003 * 120.00157 * 201.36238 * 16 15 14 18 18 C 1.38980 * 119.99865 * 21.36317 * 16 15 14 19 19 N 1.31334 * 120.00233 * 10.98500 * 18 16 15 20 20 Si 1.86802 * 119.99985 * 190.97860 * 18 16 15 21 21 H 1.48497 * 109.46998 * 90.00225 * 20 18 16 22 22 H 1.48502 * 109.47214 * 210.00408 * 20 18 16 23 23 H 1.48506 * 109.47039 * 330.00212 * 20 18 16 24 24 C 1.38320 * 110.31692 * 0.41063 * 15 14 13 25 25 C 1.39000 * 133.15661 * 179.80543 * 24 15 14 26 26 C 1.37902 * 119.92934 * 180.02562 * 25 24 15 27 27 C 1.38676 * 120.60954 * 359.95568 * 26 25 24 28 28 C 1.37893 * 120.28718 * 0.02562 * 27 26 25 29 29 C 1.39176 * 119.67684 * 0.02562 * 28 27 26 30 30 C 1.39865 * 107.92197 * 0.02562 * 4 3 2 31 31 N 1.30836 * 108.20048 * 0.26394 * 30 4 3 32 32 H 1.09007 * 109.47160 * 90.00463 * 1 2 3 33 33 H 1.08998 * 109.47490 * 210.00078 * 1 2 3 34 34 H 1.09004 * 109.47467 * 330.00225 * 1 2 3 35 35 H 1.08001 * 126.13151 * 0.03575 * 3 2 1 36 36 H 1.09003 * 110.72202 * 259.97177 * 7 5 4 37 37 H 1.09000 * 110.72038 * 23.24535 * 7 5 4 38 38 H 1.09002 * 111.00417 * 206.42406 * 8 7 5 39 39 H 1.08999 * 111.03420 * 82.58374 * 8 7 5 40 40 H 1.08997 * 110.36584 * 278.16288 * 9 8 7 41 41 H 1.09008 * 110.45718 * 155.89256 * 9 8 7 42 42 H 1.08001 * 125.13152 * 0.02562 * 14 13 11 43 43 H 0.97001 * 120.00005 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.04111 * 359.97438 * 25 24 15 45 45 H 1.08001 * 119.69574 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.85799 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.16020 * 180.02562 * 28 27 26 48 48 H 1.07997 * 125.89850 * 180.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5436 0.6665 0.0006 5 6 4.7679 1.5453 0.0013 6 1 4.5039 2.5490 -0.3320 7 6 5.3723 1.6021 1.4202 8 6 6.8997 1.5884 1.1481 9 6 6.9874 0.6560 -0.0858 10 7 5.7922 0.9766 -0.8869 11 6 5.6604 0.7815 -2.2140 12 8 4.5951 1.0028 -2.7586 13 6 6.8032 0.3016 -3.0030 14 6 7.8157 -0.5016 -2.5670 15 7 8.6875 -0.7334 -3.5832 16 6 9.8170 -1.5049 -3.4857 17 1 10.6230 -1.3740 -4.1926 18 6 9.9244 -2.4552 -2.4774 19 7 8.8732 -2.7679 -1.7549 20 14 11.5641 -3.2881 -2.1498 21 1 12.3276 -2.5011 -1.1483 22 1 11.3279 -4.6580 -1.6273 23 1 12.3403 -3.3673 -3.4134 24 6 8.2762 -0.0757 -4.7283 25 6 8.8006 0.0162 -6.0123 26 6 8.1505 0.7670 -6.9690 27 6 6.9735 1.4338 -6.6637 28 6 6.4379 1.3541 -5.3955 29 6 7.0848 0.6006 -4.4205 30 6 3.5346 -0.7321 0.0003 31 7 2.2891 -1.1327 -0.0061 32 1 -0.3634 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3634 0.8900 0.5138 35 1 1.9281 2.1194 0.0005 36 1 5.0792 2.5212 1.9277 37 1 5.0762 0.7285 2.0008 38 1 7.4436 1.1688 1.9944 39 1 7.2636 2.5878 0.9092 40 1 6.9665 -0.3884 0.2256 41 1 7.8931 0.8629 -0.6562 42 1 7.9089 -0.8960 -1.5659 43 1 8.9483 -3.4310 -1.0509 44 1 9.7167 -0.4992 -6.2603 45 1 8.5615 0.8362 -7.9653 46 1 6.4742 2.0181 -7.4224 47 1 5.5210 1.8739 -5.1601 48 1 4.4053 -1.3710 0.0011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072255004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = 95.580558 kcal Electronic energy + Delta-G solvation = -33012.272915 eV Core-core repulsion = 28840.771635 eV Total energy + Delta-G solvation = -4171.501279 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.30986 -42.00391 -40.33982 -38.08384 -37.87620 -35.08100 -34.19142 -33.16778 -32.22997 -31.98703 -30.51641 -29.69784 -28.95727 -27.17432 -27.04429 -24.92570 -23.41851 -22.80605 -22.40683 -22.16972 -21.90842 -21.04160 -19.76741 -19.42015 -18.25031 -17.58029 -17.31991 -16.90140 -16.76916 -16.28025 -16.13164 -16.01585 -15.54172 -15.40415 -15.18559 -14.95880 -14.69100 -14.57764 -14.39116 -14.26688 -13.87632 -13.66977 -13.58224 -13.55545 -13.28616 -13.17125 -13.06573 -12.96781 -12.86066 -12.34762 -12.27908 -12.22202 -12.08230 -11.90606 -11.77508 -11.66419 -11.41847 -11.04554 -10.71363 -10.36892 -10.32935 -9.59722 -9.18207 -9.00061 -8.77970 -8.46386 -6.33639 0.35958 0.84393 0.96877 1.30316 1.39591 1.53973 1.61707 1.73279 1.78773 2.10574 2.32529 2.48439 2.91234 2.97955 3.25148 3.64188 3.73524 3.82592 4.01375 4.07914 4.17913 4.26285 4.33238 4.34175 4.39009 4.40670 4.42194 4.43579 4.64129 4.66441 4.66844 4.74828 4.85790 4.87450 4.96097 5.02761 5.06826 5.09787 5.14557 5.16700 5.20977 5.25937 5.34287 5.46588 5.61528 5.64520 5.71672 5.75812 5.85372 6.13147 6.20710 6.30375 6.48375 6.72121 6.75888 6.98156 7.40109 7.54420 8.36906 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.003607 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.211349 B = 7760.994106 C = 9426.561923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.380 5.380 3 C 0.069 3.931 4 C -0.244 4.244 5 C 0.212 3.788 6 H 0.077 0.923 7 C -0.106 4.106 8 C -0.120 4.120 9 C 0.093 3.907 10 N -0.609 5.609 11 C 0.617 3.383 12 O -0.592 6.592 13 C -0.329 4.329 14 C 0.116 3.884 15 N -0.292 5.292 16 C -0.375 4.375 17 H 0.113 0.887 18 C 0.009 3.991 19 N -0.876 5.876 20 Si 1.013 2.987 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.259 1.259 24 C 0.016 3.984 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.146 4.146 28 C -0.102 4.102 29 C -0.093 4.093 30 C 0.051 3.949 31 N -0.339 5.339 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.209 0.791 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.183 0.817 43 H 0.289 0.711 44 H 0.121 0.879 45 H 0.154 0.846 46 H 0.147 0.853 47 H 0.107 0.893 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 8.969 8.564 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.162 5.162 3 C -0.079 4.079 4 C -0.256 4.256 5 C 0.108 3.892 6 H 0.095 0.905 7 C -0.144 4.144 8 C -0.158 4.158 9 C -0.029 4.029 10 N -0.341 5.341 11 C 0.410 3.590 12 O -0.474 6.474 13 C -0.340 4.340 14 C -0.026 4.026 15 N 0.046 4.954 16 C -0.502 4.502 17 H 0.131 0.869 18 C -0.197 4.197 19 N -0.508 5.508 20 Si 0.833 3.167 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.091 4.091 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.165 4.165 28 C -0.121 4.121 29 C -0.098 4.098 30 C -0.134 4.134 31 N -0.162 5.162 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.226 0.774 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.200 0.800 43 H 0.099 0.901 44 H 0.139 0.861 45 H 0.172 0.828 46 H 0.165 0.835 47 H 0.125 0.875 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.508 7.700 8.365 13.625 hybrid contribution 1.063 -0.460 -0.140 1.166 sum -6.446 7.241 8.224 12.713 Atomic orbital electron populations 1.22176 0.71964 1.06214 1.04116 1.48759 1.07881 1.03206 1.56378 1.22730 0.90043 0.94554 1.00526 1.20378 0.95453 0.93468 1.16287 1.19891 0.84407 0.94107 0.90759 0.90508 1.22662 0.94288 1.04401 0.93015 1.22790 0.96754 0.99863 0.96352 1.22544 0.87925 0.99468 0.93008 1.48295 1.16666 1.63440 1.05748 1.16899 0.85945 0.75761 0.80358 1.90620 1.29458 1.55844 1.71510 1.19776 1.02290 1.17011 0.94876 1.22616 0.89226 0.96323 0.94431 1.40256 1.17722 1.31662 1.05767 1.20324 0.94544 1.17375 1.17924 0.86891 1.26495 1.02907 0.95512 0.94824 1.69893 1.30303 1.30643 1.19950 0.84648 0.75383 0.77172 0.79537 1.18262 1.19883 1.18318 1.18933 0.97309 1.02577 0.90237 1.20269 1.01172 1.02327 0.90152 1.20983 0.96044 0.98106 0.99221 1.21084 0.97354 1.02372 0.95689 1.20516 0.99134 0.99264 0.93150 1.18978 0.95830 1.01613 0.93350 1.23504 0.94600 0.95637 0.99651 1.77212 1.02244 1.10179 1.26564 0.90671 0.89127 0.85839 0.77390 0.87065 0.90495 0.87685 0.89703 0.92265 0.91928 0.79996 0.90070 0.86107 0.82801 0.83528 0.87500 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.54 11.47 127.77 1.47 3.00 16 2 N -0.38 -10.49 4.01 -369.57 -1.48 -11.97 16 3 C 0.07 1.80 11.40 83.54 0.95 2.75 16 4 C -0.24 -7.66 4.08 -20.14 -0.08 -7.75 16 5 C 0.21 6.17 3.32 44.60 0.15 6.32 16 6 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 7 C -0.11 -2.13 6.47 31.78 0.21 -1.92 16 8 C -0.12 -2.53 7.09 31.99 0.23 -2.31 16 9 C 0.09 3.00 5.30 86.86 0.46 3.46 16 10 N -0.61 -22.64 2.83 -796.55 -2.25 -24.89 16 11 C 0.62 29.30 7.60 86.52 0.66 29.96 16 12 O -0.59 -30.99 16.79 -4.26 -0.07 -31.06 16 13 C -0.33 -16.90 5.92 -18.97 -0.11 -17.01 16 14 C 0.12 5.99 7.94 83.63 0.66 6.66 16 15 N -0.29 -15.49 2.89 -342.12 -0.99 -16.48 16 16 C -0.38 -19.06 9.90 84.04 0.83 -18.23 16 17 H 0.11 5.43 7.86 -2.91 -0.02 5.40 16 18 C 0.01 0.43 5.35 84.95 0.45 0.88 16 19 N -0.88 -43.63 10.84 21.66 0.23 -43.39 16 20 Si 1.01 36.48 29.57 68.60 2.03 38.50 16 21 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 22 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 23 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 24 C 0.02 0.84 6.73 38.83 0.26 1.10 16 25 C -0.12 -5.11 9.93 22.37 0.22 -4.89 16 26 C -0.12 -4.46 10.02 22.29 0.22 -4.24 16 27 C -0.15 -5.41 10.03 22.29 0.22 -5.19 16 28 C -0.10 -4.60 10.09 22.41 0.23 -4.38 16 29 C -0.09 -4.74 6.32 -20.06 -0.13 -4.86 16 30 C 0.05 1.88 11.68 85.24 1.00 2.88 16 31 N -0.34 -12.27 12.58 -57.03 -0.72 -12.99 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.21 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.58 7.84 -2.39 -0.02 1.56 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.99 7.73 -2.39 -0.02 1.97 16 41 H 0.06 2.28 6.32 -2.38 -0.02 2.26 16 42 H 0.18 9.12 4.28 -2.91 -0.01 9.10 16 43 H 0.29 13.17 8.31 -92.71 -0.77 12.40 16 44 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 46 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 47 H 0.11 4.82 8.05 -2.91 -0.02 4.80 16 48 H 0.16 6.07 8.06 -2.91 -0.02 6.04 16 Total: -1.00 -76.48 399.09 5.64 -70.84 By element: Atomic # 1 Polarization: 44.22 SS G_CDS: 0.99 Total: 45.20 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 7.90 Total: -13.77 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -5.21 Total: -109.72 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.07 Total: -31.06 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.50 kcal Total: -76.48 5.64 -70.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072255004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.425 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds