Wall clock time and date at job start Tue Mar 31 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46986 * 241.96362 * 3 2 1 5 5 C 1.52995 * 109.46995 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47068 * 179.97438 * 5 4 3 7 7 C 1.35900 * 116.99855 * 180.02562 * 6 5 4 8 8 C 1.38805 * 120.02337 * 359.72030 * 7 6 5 9 9 C 1.38166 * 120.08237 * 179.76620 * 8 7 6 10 10 C 1.38158 * 120.12727 * 0.51681 * 9 8 7 11 11 C 1.38892 * 120.04244 * 359.74011 * 10 9 8 12 12 N 1.39921 * 120.04460 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00188 * 144.19058 * 12 11 10 14 14 O 1.21588 * 119.99413 * 3.85120 * 13 12 11 15 15 N 1.34768 * 120.00263 * 183.85654 * 13 12 11 16 16 C 1.39232 * 120.00030 * 184.13539 * 15 13 12 17 17 C 1.39485 * 119.83178 * 323.46980 * 16 15 13 18 18 C 1.36373 * 120.16491 * 179.71972 * 17 16 15 19 19 C 1.40866 * 119.83013 * 0.57659 * 18 17 16 20 20 C 1.41149 * 120.16635 * 179.67686 * 19 18 17 21 21 H 1.08001 * 120.00537 * 159.47257 * 20 19 18 22 22 C 1.39903 * 119.99821 * 339.47402 * 20 19 18 23 23 N 1.30877 * 119.99992 * 327.25626 * 22 20 19 24 24 Si 1.86801 * 119.99715 * 147.25600 * 22 20 19 25 25 H 1.48502 * 109.46962 * 94.99063 * 24 22 20 26 26 H 1.48504 * 109.47050 * 214.98477 * 24 22 20 27 27 H 1.48494 * 109.47451 * 334.98821 * 24 22 20 28 28 C 1.40875 * 119.67186 * 359.70092 * 19 18 17 29 29 C 1.36370 * 119.82574 * 359.97438 * 28 19 18 30 30 C 1.38585 * 120.01818 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.46824 * 121.97036 * 3 2 1 32 32 H 1.08994 * 109.47664 * 1.96774 * 3 2 1 33 33 H 1.08996 * 109.46883 * 60.00370 * 4 3 2 34 34 H 1.09002 * 109.47048 * 300.00390 * 4 3 2 35 35 H 1.09004 * 109.47056 * 60.00526 * 5 4 3 36 36 H 1.08994 * 109.47422 * 300.00269 * 5 4 3 37 37 H 1.08005 * 119.95666 * 0.02562 * 8 7 6 38 38 H 1.08005 * 119.93659 * 180.23041 * 9 8 7 39 39 H 1.08001 * 119.98280 * 179.76355 * 10 9 8 40 40 H 0.97000 * 120.00228 * 324.18083 * 12 11 10 41 41 H 0.96998 * 119.99900 * 4.13988 * 15 13 12 42 42 H 1.08005 * 119.91945 * 359.97438 * 17 16 15 43 43 H 1.08004 * 120.08279 * 180.27385 * 18 17 16 44 44 H 0.96994 * 119.99772 * 180.02562 * 23 22 20 45 45 H 1.08005 * 120.08252 * 179.97438 * 28 19 18 46 46 H 1.08007 * 119.90892 * 180.02562 * 29 28 19 47 47 H 1.08008 * 120.06152 * 359.95039 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6789 1.2733 5 6 4.6476 0.6802 1.2730 6 8 5.1237 1.3142 2.4619 7 6 6.4709 1.3995 2.6185 8 6 7.3171 0.8780 1.6497 9 6 8.6870 0.9683 1.8053 10 6 9.2190 1.5683 2.9304 11 6 8.3772 2.0873 3.9056 12 7 8.9159 2.6945 5.0453 13 6 8.3015 3.7606 5.5951 14 8 7.2426 4.1517 5.1434 15 7 8.8609 4.3932 6.6454 16 6 8.1858 5.4400 7.2677 17 6 7.4240 6.3251 6.5050 18 6 6.7555 7.3493 7.1082 19 6 6.8455 7.5193 8.5036 20 6 6.1620 8.5810 9.1344 21 1 5.9495 8.5337 10.1923 22 6 5.7596 9.6946 8.3893 23 7 6.4816 10.0991 7.3754 24 14 4.1919 10.6040 8.8415 25 1 4.5230 11.7548 9.7198 26 1 3.5323 11.0981 7.6061 27 1 3.2741 9.6825 9.5580 28 6 7.6216 6.6247 9.2665 29 6 8.2791 5.6013 8.6500 30 6 7.0008 2.0017 3.7486 31 1 2.9711 0.5450 -0.8718 32 1 2.9719 -1.0261 -0.0353 33 1 2.7546 0.1347 2.1451 34 1 2.7538 1.7058 1.3085 35 1 5.0104 1.2248 0.4012 36 1 5.0118 -0.3465 1.2375 37 1 6.9042 0.4047 0.7711 38 1 9.3433 0.5650 1.0483 39 1 10.2902 1.6343 3.0515 40 1 9.7315 2.3480 5.4398 41 1 9.7338 4.1194 6.9678 42 1 7.3602 6.1967 5.4345 43 1 6.1624 8.0313 6.5168 44 1 6.2029 10.8714 6.8591 45 1 7.6956 6.7490 10.3368 46 1 8.8741 4.9144 9.2336 47 1 6.3439 2.4044 4.5055 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072282520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:07 Heat of formation + Delta-G solvation = 10.019648 kcal Electronic energy + Delta-G solvation = -30136.197030 eV Core-core repulsion = 25863.266889 eV Total energy + Delta-G solvation = -4272.930141 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.72813 -39.82317 -38.15226 -37.39196 -37.00231 -34.72263 -34.43122 -34.09583 -33.02332 -30.54575 -29.69409 -29.43221 -28.58088 -27.75762 -25.05235 -23.48601 -22.71211 -22.07923 -21.33570 -20.89176 -20.00780 -18.82964 -18.12655 -17.80269 -17.33352 -16.78400 -16.62814 -16.13713 -15.83953 -15.44505 -15.30824 -15.23646 -14.82580 -14.34162 -14.13313 -13.94618 -13.74519 -13.57107 -13.43890 -13.13758 -13.03281 -12.67946 -12.51335 -12.19159 -12.18256 -12.05954 -11.98447 -11.84678 -11.68019 -11.35206 -11.19992 -11.15310 -11.08462 -10.99686 -10.66557 -10.19387 -10.08847 -9.67028 -9.54710 -8.98640 -8.90650 -8.40244 -8.11237 -7.51695 -7.15353 -6.84701 -4.26005 1.24192 1.38960 2.23816 2.36686 2.62715 2.78417 3.01764 3.07238 3.08218 3.11797 3.19969 3.51137 3.57546 3.83282 3.90675 4.35091 4.47237 4.49340 4.53275 4.60587 4.75537 4.81198 4.83078 4.93587 4.99957 5.09912 5.25781 5.46869 5.48647 5.61402 5.68152 5.81825 6.14609 6.16916 6.19040 6.32265 6.38717 6.42759 6.78217 6.81767 6.89688 7.01536 7.08800 7.13161 7.25769 7.29449 7.34772 7.60993 7.81381 7.96111 8.05729 8.24481 8.39354 8.59776 8.85547 8.87148 9.04739 10.03397 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007495 B = 0.002020 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3734.766413 B =13858.591275 C =16979.296998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.206 3.794 3 C -0.020 4.020 4 C -0.120 4.120 5 C 0.061 3.939 6 O -0.310 6.310 7 C 0.148 3.852 8 C -0.232 4.232 9 C -0.064 4.064 10 C -0.188 4.188 11 C 0.214 3.786 12 N -0.692 5.692 13 C 0.690 3.310 14 O -0.556 6.556 15 N -0.657 5.657 16 C -0.009 4.009 17 C -0.074 4.074 18 C -0.174 4.174 19 C 0.111 3.889 20 C -0.464 4.464 21 H 0.082 0.918 22 C 0.087 3.913 23 N -0.765 5.765 24 Si 0.896 3.104 25 H -0.270 1.270 26 H -0.274 1.274 27 H -0.257 1.257 28 C -0.223 4.223 29 C -0.094 4.094 30 C -0.152 4.152 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.405 0.595 41 H 0.391 0.609 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.284 0.716 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 -19.500 -13.755 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.112 4.112 3 C -0.061 4.061 4 C -0.159 4.159 5 C -0.014 4.014 6 O -0.224 6.224 7 C 0.102 3.898 8 C -0.251 4.251 9 C -0.082 4.082 10 C -0.209 4.209 11 C 0.117 3.883 12 N -0.340 5.340 13 C 0.391 3.609 14 O -0.431 6.431 15 N -0.302 5.302 16 C -0.101 4.101 17 C -0.094 4.094 18 C -0.193 4.193 19 C 0.108 3.892 20 C -0.492 4.492 21 H 0.100 0.900 22 C -0.135 4.135 23 N -0.388 5.388 24 Si 0.719 3.281 25 H -0.195 1.195 26 H -0.198 1.198 27 H -0.181 1.181 28 C -0.243 4.243 29 C -0.115 4.115 30 C -0.173 4.173 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.240 0.760 41 H 0.225 0.775 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.331 -18.821 -14.156 23.665 hybrid contribution 0.828 0.141 0.277 0.885 sum 3.159 -18.679 -13.879 23.485 Atomic orbital electron populations 1.81276 1.13073 1.08475 1.08097 1.29034 0.95168 0.93457 0.93570 1.19114 0.81931 1.04521 1.00491 1.21449 0.93783 1.03319 0.97335 1.22690 0.94080 0.97605 0.87072 1.86082 1.19305 1.75326 1.41641 1.18698 0.81943 0.95031 0.94152 1.21129 0.94343 1.08731 1.00933 1.20612 0.94245 0.96949 0.96433 1.20784 0.99351 1.06288 0.94497 1.17119 0.91349 0.93390 0.86408 1.42701 1.30101 1.31701 1.29497 1.16037 0.83877 0.79580 0.81374 1.90945 1.21915 1.67144 1.63144 1.42010 1.20866 1.35027 1.32291 1.16849 1.09192 0.93303 0.90775 1.20462 0.97267 0.93256 0.98395 1.20730 1.04427 0.99088 0.95101 1.17606 0.88414 0.91363 0.91842 1.19498 1.32037 1.00859 0.96778 0.90040 1.25957 0.96933 0.96833 0.93760 1.69947 1.33461 1.20084 1.15298 0.86510 0.82618 0.79616 0.79342 1.19486 1.19841 1.18072 1.20429 1.05029 1.00732 0.98136 1.20000 1.01107 0.98700 0.91645 1.20554 0.94344 1.03373 0.99076 0.86902 0.86954 0.89661 0.89529 0.91443 0.91509 0.85633 0.85617 0.85754 0.75974 0.77549 0.87675 0.87483 0.90532 0.88670 0.89290 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.75 18.54 42.15 0.78 -3.97 16 2 C 0.21 1.45 15.43 -20.76 -0.32 1.13 16 3 C -0.02 -0.05 5.70 -29.51 -0.17 -0.22 16 4 C -0.12 -0.59 5.54 -26.73 -0.15 -0.74 16 5 C 0.06 0.37 4.74 37.16 0.18 0.54 16 6 O -0.31 -3.56 10.13 -19.42 -0.20 -3.75 16 7 C 0.15 1.82 6.68 -39.24 -0.26 1.56 16 8 C -0.23 -2.17 9.04 -39.40 -0.36 -2.52 16 9 C -0.06 -0.56 10.03 -39.64 -0.40 -0.96 16 10 C -0.19 -1.90 9.96 -39.37 -0.39 -2.30 16 11 C 0.21 2.80 6.28 -83.72 -0.53 2.27 16 12 N -0.69 -8.86 5.34 -14.24 -0.08 -8.93 16 13 C 0.69 12.14 8.22 -86.93 -0.71 11.42 16 14 O -0.56 -12.18 11.35 5.29 0.06 -12.12 16 15 N -0.66 -11.33 5.31 -14.10 -0.07 -11.40 16 16 C -0.01 -0.20 6.28 -83.57 -0.52 -0.72 16 17 C -0.07 -1.84 8.60 -39.79 -0.34 -2.19 16 18 C -0.17 -4.65 8.74 -39.26 -0.34 -4.99 16 19 C 0.11 2.96 5.59 -106.80 -0.60 2.36 16 20 C -0.46 -12.26 8.94 -37.85 -0.34 -12.60 16 21 H 0.08 2.06 8.02 -52.49 -0.42 1.64 16 22 C 0.09 2.19 4.78 -17.34 -0.08 2.10 16 23 N -0.77 -19.70 11.70 55.55 0.65 -19.05 16 24 Si 0.90 18.49 29.66 -169.99 -5.04 13.45 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 28 C -0.22 -5.39 9.74 -39.26 -0.38 -5.77 16 29 C -0.09 -2.05 9.90 -39.79 -0.39 -2.44 16 30 C -0.15 -2.27 8.62 -39.25 -0.34 -2.61 16 31 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.11 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.31 7.67 -51.93 -0.40 -0.09 16 36 H 0.07 0.26 7.65 -51.93 -0.40 -0.13 16 37 H 0.13 0.78 6.29 -52.48 -0.33 0.45 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.41 3.55 8.84 -40.82 -0.36 3.19 16 41 H 0.39 5.09 8.84 -40.82 -0.36 4.73 16 42 H 0.11 2.67 6.32 -52.48 -0.33 2.33 16 43 H 0.11 2.96 6.43 -52.48 -0.34 2.62 16 44 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 45 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 46 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.15 2.71 6.30 -52.48 -0.33 2.37 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -34.87 405.64 -10.02 -44.90 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.79 Total: 11.44 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -6.45 Total: -16.67 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 1.28 Total: -43.35 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.14 Total: -15.87 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.04 Total: 13.45 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.87 -10.02 -44.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072282520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.915 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds