Wall clock time and date at job start Tue Mar 31 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46986 * 241.96362 * 3 2 1 5 5 C 1.52995 * 109.46995 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47068 * 179.97438 * 5 4 3 7 7 C 1.35900 * 116.99855 * 180.02562 * 6 5 4 8 8 C 1.38805 * 120.02337 * 359.72030 * 7 6 5 9 9 C 1.38166 * 120.08237 * 179.76620 * 8 7 6 10 10 C 1.38158 * 120.12727 * 0.51681 * 9 8 7 11 11 C 1.38892 * 120.04244 * 359.74011 * 10 9 8 12 12 N 1.39921 * 120.04460 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00188 * 144.19058 * 12 11 10 14 14 O 1.21588 * 119.99413 * 3.85120 * 13 12 11 15 15 N 1.34768 * 120.00263 * 183.85654 * 13 12 11 16 16 C 1.39232 * 120.00030 * 184.13539 * 15 13 12 17 17 C 1.39485 * 119.83178 * 323.46980 * 16 15 13 18 18 C 1.36373 * 120.16491 * 179.71972 * 17 16 15 19 19 C 1.40866 * 119.83013 * 0.57659 * 18 17 16 20 20 C 1.41149 * 120.16635 * 179.67686 * 19 18 17 21 21 H 1.08001 * 120.00537 * 159.47257 * 20 19 18 22 22 C 1.39903 * 119.99821 * 339.47402 * 20 19 18 23 23 N 1.30877 * 119.99992 * 327.25626 * 22 20 19 24 24 Si 1.86801 * 119.99715 * 147.25600 * 22 20 19 25 25 H 1.48502 * 109.46962 * 94.99063 * 24 22 20 26 26 H 1.48504 * 109.47050 * 214.98477 * 24 22 20 27 27 H 1.48494 * 109.47451 * 334.98821 * 24 22 20 28 28 C 1.40875 * 119.67186 * 359.70092 * 19 18 17 29 29 C 1.36370 * 119.82574 * 359.97438 * 28 19 18 30 30 C 1.38585 * 120.01818 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.46824 * 121.97036 * 3 2 1 32 32 H 1.08994 * 109.47664 * 1.96774 * 3 2 1 33 33 H 1.08996 * 109.46883 * 60.00370 * 4 3 2 34 34 H 1.09002 * 109.47048 * 300.00390 * 4 3 2 35 35 H 1.09004 * 109.47056 * 60.00526 * 5 4 3 36 36 H 1.08994 * 109.47422 * 300.00269 * 5 4 3 37 37 H 1.08005 * 119.95666 * 0.02562 * 8 7 6 38 38 H 1.08005 * 119.93659 * 180.23041 * 9 8 7 39 39 H 1.08001 * 119.98280 * 179.76355 * 10 9 8 40 40 H 0.97000 * 120.00228 * 324.18083 * 12 11 10 41 41 H 0.96998 * 119.99900 * 4.13988 * 15 13 12 42 42 H 1.08005 * 119.91945 * 359.97438 * 17 16 15 43 43 H 1.08004 * 120.08279 * 180.27385 * 18 17 16 44 44 H 0.96994 * 119.99772 * 180.02562 * 23 22 20 45 45 H 1.08005 * 120.08252 * 179.97438 * 28 19 18 46 46 H 1.08007 * 119.90892 * 180.02562 * 29 28 19 47 47 H 1.08008 * 120.06152 * 359.95039 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6789 1.2733 5 6 4.6476 0.6802 1.2730 6 8 5.1237 1.3142 2.4619 7 6 6.4709 1.3995 2.6185 8 6 7.3171 0.8780 1.6497 9 6 8.6870 0.9683 1.8053 10 6 9.2190 1.5683 2.9304 11 6 8.3772 2.0873 3.9056 12 7 8.9159 2.6945 5.0453 13 6 8.3015 3.7606 5.5951 14 8 7.2426 4.1517 5.1434 15 7 8.8609 4.3932 6.6454 16 6 8.1858 5.4400 7.2677 17 6 7.4240 6.3251 6.5050 18 6 6.7555 7.3493 7.1082 19 6 6.8455 7.5193 8.5036 20 6 6.1620 8.5810 9.1344 21 1 5.9495 8.5337 10.1923 22 6 5.7596 9.6946 8.3893 23 7 6.4816 10.0991 7.3754 24 14 4.1919 10.6040 8.8415 25 1 4.5230 11.7548 9.7198 26 1 3.5323 11.0981 7.6061 27 1 3.2741 9.6825 9.5580 28 6 7.6216 6.6247 9.2665 29 6 8.2791 5.6013 8.6500 30 6 7.0008 2.0017 3.7486 31 1 2.9711 0.5450 -0.8718 32 1 2.9719 -1.0261 -0.0353 33 1 2.7546 0.1347 2.1451 34 1 2.7538 1.7058 1.3085 35 1 5.0104 1.2248 0.4012 36 1 5.0118 -0.3465 1.2375 37 1 6.9042 0.4047 0.7711 38 1 9.3433 0.5650 1.0483 39 1 10.2902 1.6343 3.0515 40 1 9.7315 2.3480 5.4398 41 1 9.7338 4.1194 6.9678 42 1 7.3602 6.1967 5.4345 43 1 6.1624 8.0313 6.5168 44 1 6.2029 10.8714 6.8591 45 1 7.6956 6.7490 10.3368 46 1 8.8741 4.9144 9.2336 47 1 6.3439 2.4044 4.5055 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072282520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:05 Heat of formation + Delta-G solvation = -12.010332 kcal Electronic energy + Delta-G solvation = -30137.152322 eV Core-core repulsion = 25863.266889 eV Total energy + Delta-G solvation = -4273.885432 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.89726 -40.83154 -39.48873 -38.47415 -37.85684 -36.26242 -35.61440 -34.83256 -34.66225 -31.48270 -31.38558 -30.99666 -29.87349 -28.25098 -26.80440 -24.45200 -23.49605 -23.30510 -23.02575 -22.08705 -21.45867 -19.71153 -19.47245 -19.20846 -18.43899 -17.94040 -17.26840 -17.10425 -16.99629 -16.72702 -16.52427 -16.20980 -15.77636 -15.72895 -15.53618 -15.03689 -14.80979 -14.55965 -14.41195 -14.38083 -14.12445 -13.96343 -13.81532 -13.66831 -13.35189 -13.13902 -12.98006 -12.81624 -12.74234 -12.71067 -12.47503 -12.37430 -12.15494 -11.96609 -11.77023 -11.56069 -11.47383 -11.22775 -11.11666 -10.79847 -10.65499 -9.45100 -9.35999 -9.06366 -8.91791 -8.68012 -6.22188 0.36698 0.56526 0.86749 1.15770 1.35053 1.43226 1.53324 1.62210 1.72225 1.83518 2.10422 2.17599 2.36439 2.65717 2.92624 3.13093 3.33288 3.73230 3.96684 4.01230 4.15442 4.16333 4.26522 4.37185 4.43643 4.46965 4.48760 4.54068 4.59871 4.66806 4.76192 4.83023 4.96599 5.08470 5.11510 5.15657 5.22567 5.26027 5.37385 5.41330 5.43868 5.45372 5.58112 5.66550 5.79275 5.97179 6.08421 6.10523 6.18973 6.34442 6.58867 6.64068 6.65861 6.89855 7.01424 7.08167 7.58784 8.19621 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007495 B = 0.002020 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3734.766413 B =13858.591275 C =16979.296998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.235 3.765 3 C -0.010 4.010 4 C -0.118 4.118 5 C 0.052 3.948 6 O -0.344 6.344 7 C 0.136 3.864 8 C -0.220 4.220 9 C -0.055 4.055 10 C -0.182 4.182 11 C 0.188 3.812 12 N -0.670 5.670 13 C 0.689 3.311 14 O -0.604 6.604 15 N -0.648 5.648 16 C 0.007 3.993 17 C -0.088 4.088 18 C -0.200 4.200 19 C 0.079 3.921 20 C -0.501 4.501 21 H 0.083 0.917 22 C 0.047 3.953 23 N -0.801 5.801 24 Si 0.970 3.030 25 H -0.254 1.254 26 H -0.268 1.268 27 H -0.259 1.259 28 C -0.233 4.233 29 C -0.088 4.088 30 C -0.194 4.194 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.154 0.846 40 H 0.426 0.574 41 H 0.416 0.584 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.292 0.708 45 H 0.110 0.890 46 H 0.135 0.865 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.748 -22.226 -15.512 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.082 4.082 3 C -0.050 4.050 4 C -0.157 4.157 5 C -0.022 4.022 6 O -0.259 6.259 7 C 0.090 3.910 8 C -0.239 4.239 9 C -0.074 4.074 10 C -0.202 4.202 11 C 0.093 3.907 12 N -0.319 5.319 13 C 0.390 3.610 14 O -0.483 6.483 15 N -0.296 5.296 16 C -0.087 4.087 17 C -0.108 4.108 18 C -0.220 4.220 19 C 0.076 3.924 20 C -0.529 4.529 21 H 0.101 0.899 22 C -0.173 4.173 23 N -0.424 5.424 24 Si 0.790 3.210 25 H -0.178 1.178 26 H -0.193 1.193 27 H -0.183 1.183 28 C -0.252 4.252 29 C -0.108 4.108 30 C -0.215 4.215 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.183 0.817 38 H 0.186 0.814 39 H 0.171 0.829 40 H 0.265 0.735 41 H 0.254 0.746 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.128 0.872 46 H 0.153 0.847 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.031 -21.609 -15.920 27.308 hybrid contribution 0.123 0.782 0.689 1.050 sum 5.154 -20.827 -15.231 26.312 Atomic orbital electron populations 1.81300 1.15678 1.11311 1.10696 1.29901 0.95990 0.91048 0.91234 1.19401 0.78566 1.06931 1.00060 1.21391 0.93660 1.02259 0.98357 1.23061 0.94128 0.99168 0.85861 1.86047 1.19268 1.76165 1.44384 1.18827 0.82793 0.95250 0.94162 1.21564 0.94379 1.07085 1.00841 1.21181 0.94579 0.95186 0.96420 1.21129 1.00390 1.04993 0.93714 1.17392 0.91191 0.94811 0.87354 1.42335 1.30212 1.30046 1.29344 1.16211 0.83461 0.80331 0.81010 1.90939 1.24217 1.68678 1.64454 1.41735 1.21720 1.33948 1.32171 1.16887 1.07520 0.93114 0.91135 1.20488 0.98375 0.93901 0.98073 1.20621 1.05878 0.99947 0.95532 1.17940 0.89679 0.92729 0.92024 1.19746 1.34047 1.01840 0.97245 0.89881 1.26810 0.99606 0.97360 0.93494 1.69969 1.35100 1.20943 1.16426 0.85389 0.77919 0.78440 0.79234 1.17810 1.19285 1.18308 1.20717 1.04710 1.00907 0.98912 1.20362 1.00427 0.98418 0.91563 1.20436 0.95018 1.06120 0.99948 0.83638 0.83170 0.90959 0.91659 0.89366 0.88511 0.81735 0.81371 0.82860 0.73451 0.74629 0.88998 0.89870 0.89746 0.87202 0.84692 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.60 18.54 20.01 0.37 -11.23 16 2 C 0.23 3.11 15.43 89.44 1.38 4.49 16 3 C -0.01 -0.02 5.70 28.79 0.16 0.15 16 4 C -0.12 -1.02 5.54 30.59 0.17 -0.85 16 5 C 0.05 0.49 4.74 71.98 0.34 0.83 16 6 O -0.34 -7.94 10.13 -92.42 -0.94 -8.88 16 7 C 0.14 3.27 6.68 22.49 0.15 3.42 16 8 C -0.22 -3.26 9.04 22.39 0.20 -3.06 16 9 C -0.06 -0.71 10.03 22.23 0.22 -0.49 16 10 C -0.18 -3.05 9.96 22.41 0.22 -2.83 16 11 C 0.19 4.79 6.28 38.14 0.24 5.03 16 12 N -0.67 -16.63 5.34 -317.24 -1.69 -18.32 16 13 C 0.69 24.60 8.22 179.06 1.47 26.07 16 14 O -0.60 -28.14 11.35 -3.99 -0.05 -28.19 16 15 N -0.65 -21.86 5.31 -316.80 -1.68 -23.54 16 16 C 0.01 0.32 6.28 38.57 0.24 0.56 16 17 C -0.09 -4.64 8.60 22.14 0.19 -4.45 16 18 C -0.20 -11.41 8.74 22.48 0.20 -11.21 16 19 C 0.08 4.41 5.59 -21.28 -0.12 4.30 16 20 C -0.50 -27.63 8.94 23.39 0.21 -27.42 16 21 H 0.08 4.36 8.02 -2.91 -0.02 4.34 16 22 C 0.05 2.41 4.78 85.24 0.41 2.82 16 23 N -0.80 -43.18 11.70 21.82 0.26 -42.92 16 24 Si 0.97 39.10 29.66 68.60 2.03 41.14 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 28 C -0.23 -11.33 9.74 22.48 0.22 -11.11 16 29 C -0.09 -3.71 9.90 22.13 0.22 -3.49 16 30 C -0.19 -6.05 8.62 22.49 0.19 -5.86 16 31 H 0.15 -0.55 8.14 -2.38 -0.02 -0.57 16 32 H 0.15 -0.73 8.14 -2.39 -0.02 -0.75 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.47 7.67 -2.38 -0.02 0.45 16 36 H 0.10 0.34 7.65 -2.39 -0.02 0.32 16 37 H 0.17 1.08 6.29 -2.91 -0.02 1.06 16 38 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 39 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.43 6.52 8.84 -92.71 -0.82 5.70 16 41 H 0.42 9.82 8.84 -92.71 -0.82 9.00 16 42 H 0.09 5.01 6.32 -2.91 -0.02 4.99 16 43 H 0.08 5.00 6.43 -2.91 -0.02 4.99 16 44 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 45 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 46 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.10 4.12 6.30 -2.91 -0.02 4.10 16 Total: -1.00 -87.04 405.64 4.04 -83.00 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.59 Total: 32.03 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 6.32 Total: -23.09 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -2.75 Total: -96.02 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.98 Total: -37.06 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.14 kcal Total: -87.04 4.04 -83.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072282520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.994 kcal (2) G-P(sol) polarization free energy of solvation -87.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds