Wall clock time and date at job start Tue Mar 31 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86801 * 119.99552 * 2 1 4 4 H 1.48498 * 109.46991 * 239.99915 * 3 2 1 5 5 H 1.48501 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47223 * 119.99849 * 3 2 1 7 7 C 1.38980 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99900 * 177.06650 * 7 2 1 9 9 N 1.37122 * 120.00012 * 357.07097 * 7 2 1 10 10 C 1.35884 * 124.84161 * 28.10398 * 9 7 2 11 11 C 1.36386 * 109.73174 * 179.97438 * 10 9 7 12 12 C 1.46939 * 126.72812 * 180.02562 * 11 10 9 13 13 O 1.21671 * 119.99831 * 229.06788 * 12 11 10 14 14 N 1.34769 * 119.99965 * 49.06225 * 12 11 10 15 15 C 1.46925 * 120.63454 * 355.71606 * 14 12 11 16 16 C 1.53196 * 108.77694 * 126.36807 * 15 14 12 17 17 C 1.53038 * 109.30853 * 54.63682 * 16 15 14 18 18 C 1.53040 * 109.54190 * 298.63386 * 17 16 15 19 19 H 1.09004 * 109.49915 * 301.38734 * 18 17 16 20 20 N 1.46502 * 109.49771 * 181.31857 * 18 17 16 21 21 C 1.34947 * 126.03561 * 274.71352 * 20 18 17 22 22 C 1.35322 * 107.74427 * 179.84098 * 21 20 18 23 23 C 1.39873 * 107.91882 * 0.43004 * 22 21 20 24 24 N 1.30842 * 108.20184 * 359.73199 * 23 22 21 25 25 C 1.46932 * 120.63012 * 175.69405 * 14 12 11 26 26 C 1.47571 * 106.54522 * 0.25919 * 11 10 9 27 27 C 1.39185 * 133.94188 * 180.51699 * 26 11 10 28 28 C 1.37890 * 119.67865 * 179.59481 * 27 26 11 29 29 C 1.38675 * 120.28660 * 359.65174 * 28 27 26 30 30 C 1.37891 * 120.61029 * 0.04021 * 29 28 27 31 31 C 1.38315 * 124.83799 * 208.06327 * 9 7 2 32 32 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 33 33 H 1.07995 * 125.13401 * 359.96095 * 10 9 7 34 34 H 1.08998 * 109.58624 * 6.58795 * 15 14 12 35 35 H 1.08991 * 109.59172 * 246.15811 * 15 14 12 36 36 H 1.09000 * 109.49631 * 294.68774 * 16 15 14 37 37 H 1.08998 * 109.49795 * 174.59041 * 16 15 14 38 38 H 1.09005 * 109.45780 * 178.61700 * 17 16 15 39 39 H 1.09000 * 109.45206 * 58.65480 * 17 16 15 40 40 H 1.08004 * 126.12843 * 0.02562 * 21 20 18 41 41 H 1.07996 * 126.03835 * 180.16344 * 22 21 20 42 42 H 1.08002 * 125.89683 * 179.76442 * 23 22 21 43 43 H 1.09002 * 109.58638 * 113.84417 * 25 14 12 44 44 H 1.08999 * 109.58154 * 353.42304 * 25 14 12 45 45 H 1.08005 * 120.16123 * 359.24508 * 27 26 11 46 46 H 1.08004 * 119.85595 * 179.66631 * 28 27 26 47 47 H 1.08001 * 119.69000 * 180.02562 * 29 28 27 48 48 H 1.07995 * 120.03446 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2822 2.7465 -0.0006 6 1 3.1009 1.6966 1.2125 7 6 2.0083 -1.2036 0.0005 8 1 3.0873 -1.2041 -0.0473 9 7 1.3241 -2.3903 0.0617 10 6 0.0621 -2.5837 -0.4034 11 6 -0.3159 -3.8759 -0.1858 12 6 -1.6042 -4.4865 -0.5417 13 8 -2.2184 -5.1357 0.2839 14 7 -2.1054 -4.3272 -1.7825 15 6 -1.4231 -3.4696 -2.7612 16 6 -1.1799 -4.2775 -4.0399 17 6 -2.5075 -4.8590 -4.5313 18 6 -3.0797 -5.7989 -3.4676 19 1 -2.3648 -6.5961 -3.2640 20 7 -4.3346 -6.3792 -3.9520 21 6 -5.5582 -5.8184 -3.8550 22 6 -6.4467 -6.6665 -4.4228 23 6 -5.7433 -7.7883 -4.8737 24 7 -4.4771 -7.6171 -4.5920 25 6 -3.3444 -5.0082 -2.1825 26 6 0.8205 -4.5393 0.4823 27 6 1.0486 -5.8326 0.9435 28 6 2.2556 -6.1443 1.5329 29 6 3.2420 -5.1779 1.6602 30 6 3.0310 -3.8946 1.2017 31 6 1.8205 -3.5614 0.6050 32 1 -0.4850 0.8400 0.0004 33 1 -0.5494 -1.8281 -0.8740 34 1 -0.4692 -3.1363 -2.3526 35 1 -2.0476 -2.6057 -2.9882 36 1 -0.4827 -5.0888 -3.8305 37 1 -0.7614 -3.6266 -4.8074 38 1 -2.3412 -5.4140 -5.4546 39 1 -3.2123 -4.0485 -4.7168 40 1 -5.7868 -4.8625 -3.4073 41 1 -7.5115 -6.5074 -4.5085 42 1 -6.1714 -8.6471 -5.3693 43 1 -4.1257 -4.2697 -2.3623 44 1 -3.6581 -5.6900 -1.3920 45 1 0.2818 -6.5869 0.8454 46 1 2.4337 -7.1455 1.8966 47 1 4.1839 -5.4327 2.1230 48 1 3.8055 -3.1492 1.3061 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072283091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:43 Heat of formation + Delta-G solvation = 108.311111 kcal Electronic energy + Delta-G solvation = -32624.973586 eV Core-core repulsion = 28454.024344 eV Total energy + Delta-G solvation = -4170.949241 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.34831 -40.54096 -39.28927 -37.00462 -36.33951 -33.81570 -33.28768 -32.01663 -31.24868 -30.12452 -29.32144 -28.84705 -27.88331 -25.99920 -24.88605 -23.74470 -22.08981 -21.76962 -21.37946 -20.96978 -20.65132 -19.76278 -18.45479 -17.82602 -17.35972 -16.60550 -15.83061 -15.53147 -15.16684 -15.13295 -14.86491 -14.65322 -14.50843 -14.44017 -14.02378 -13.69500 -13.67084 -13.46991 -13.15436 -13.02199 -12.90996 -12.79447 -12.54862 -12.47674 -11.99613 -11.66370 -11.56468 -11.50185 -11.26326 -11.11383 -11.08971 -10.87016 -10.83201 -10.76654 -10.65648 -10.47458 -10.10880 -9.50643 -9.40853 -9.26278 -8.73184 -8.69407 -8.37262 -7.33245 -7.06886 -6.80467 -4.62417 1.84663 1.97558 2.28988 2.42376 2.78959 2.83956 2.90668 2.93843 3.14498 3.38514 3.63155 3.94103 4.33246 4.49612 4.53471 4.61949 4.70624 4.81368 4.85905 4.88385 4.96884 5.11785 5.36814 5.40758 5.47540 5.58511 5.64190 5.66286 5.66958 5.73861 5.82087 5.83774 5.86052 5.93610 6.02228 6.09009 6.19747 6.22186 6.31965 6.56171 6.59136 6.68194 6.75479 6.84957 6.88997 6.93841 6.99800 7.26301 7.37393 7.40546 7.65454 7.70210 7.84091 7.89014 8.23309 8.67091 8.83813 9.12385 10.05059 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.002927 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.390846 B = 9563.195040 C =11251.699147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.046 3.954 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.345 4.345 8 H 0.109 0.891 9 N -0.277 5.277 10 C 0.132 3.868 11 C -0.317 4.317 12 C 0.615 3.385 13 O -0.555 6.555 14 N -0.612 5.612 15 C 0.098 3.902 16 C -0.130 4.130 17 C -0.126 4.126 18 C 0.148 3.852 19 H 0.106 0.894 20 N -0.360 5.360 21 C 0.056 3.944 22 C -0.279 4.279 23 C 0.039 3.961 24 N -0.296 5.296 25 C 0.111 3.889 26 C -0.061 4.061 27 C -0.087 4.087 28 C -0.156 4.156 29 C -0.139 4.139 30 C -0.101 4.101 31 C 0.050 3.950 32 H 0.284 0.716 33 H 0.184 0.816 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.172 0.828 41 H 0.145 0.855 42 H 0.181 0.819 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 -4.317 -9.201 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.127 0.873 9 N 0.062 4.938 10 C -0.010 4.010 11 C -0.327 4.327 12 C 0.408 3.592 13 O -0.433 6.433 14 N -0.347 5.347 15 C -0.025 4.025 16 C -0.169 4.169 17 C -0.165 4.165 18 C 0.045 3.955 19 H 0.124 0.876 20 N -0.142 5.142 21 C -0.091 4.091 22 C -0.309 4.309 23 C -0.147 4.147 24 N -0.117 5.117 25 C -0.014 4.014 26 C -0.066 4.066 27 C -0.105 4.105 28 C -0.175 4.175 29 C -0.158 4.158 30 C -0.121 4.121 31 C -0.057 4.057 32 H 0.095 0.905 33 H 0.200 0.800 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.189 0.811 41 H 0.163 0.837 42 H 0.198 0.802 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.301 -4.618 -8.755 10.793 hybrid contribution -0.672 1.277 0.068 1.445 sum -4.973 -3.341 -8.687 10.553 Atomic orbital electron populations 1.69715 1.06385 1.29552 1.42664 1.25583 0.95835 1.00723 0.94178 0.85706 0.79037 0.78796 0.79697 1.19028 1.20089 1.19107 1.19879 0.93058 0.81210 1.53039 0.87313 1.39969 1.10681 1.06634 1.36522 1.22403 0.87296 0.94571 0.96777 1.19248 0.95977 0.95621 1.21846 1.17529 0.83669 0.78111 0.79909 1.90693 1.60776 1.43015 1.48807 1.47874 1.25068 1.48658 1.13064 1.22029 1.00012 0.92192 0.88245 1.21924 0.96371 1.00764 0.97870 1.21956 0.97956 0.98643 0.97902 1.21718 0.82832 0.96599 0.94358 0.87606 1.48807 1.06377 1.14186 1.44828 1.22568 0.85320 1.00179 1.01036 1.21484 1.00681 0.96909 1.11778 1.23865 0.90916 0.99449 1.00425 1.77383 1.19511 0.98624 1.16231 1.21612 0.87896 0.96625 0.95279 1.18529 0.92826 0.93246 1.01985 1.20291 0.96543 0.94685 0.99025 1.20623 0.94317 0.98661 1.03893 1.20496 0.98965 0.92830 1.03547 1.19942 0.95021 0.96389 1.00776 1.18424 0.96108 0.87651 1.03562 0.90465 0.79963 0.87103 0.91462 0.90846 0.89878 0.90962 0.91139 0.81076 0.83708 0.80240 0.91274 0.88236 0.87376 0.87405 0.87163 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.90 10.72 55.50 0.59 -19.30 16 2 C 0.05 1.04 5.45 -17.49 -0.10 0.94 16 3 Si 0.94 17.35 29.55 -169.99 -5.02 12.33 16 4 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 7 C -0.34 -8.09 9.87 -14.91 -0.15 -8.24 16 8 H 0.11 2.42 7.83 -52.48 -0.41 2.00 16 9 N -0.28 -6.62 2.89 -59.49 -0.17 -6.79 16 10 C 0.13 3.01 7.51 -16.42 -0.12 2.88 16 11 C -0.32 -7.12 5.35 -103.24 -0.55 -7.67 16 12 C 0.61 12.88 7.59 -12.74 -0.10 12.78 16 13 O -0.55 -13.15 16.54 5.21 0.09 -13.06 16 14 N -0.61 -9.99 2.97 -174.21 -0.52 -10.51 16 15 C 0.10 1.38 5.83 -3.71 -0.02 1.36 16 16 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 17 C -0.13 -1.37 5.49 -26.69 -0.15 -1.52 16 18 C 0.15 1.86 3.35 -67.81 -0.23 1.63 16 19 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 20 N -0.36 -4.59 3.53 -54.74 -0.19 -4.79 16 21 C 0.06 0.60 10.58 -17.22 -0.18 0.42 16 22 C -0.28 -2.86 10.80 -40.01 -0.43 -3.30 16 23 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 24 N -0.30 -4.11 12.58 30.63 0.39 -3.72 16 25 C 0.11 1.53 5.45 -3.71 -0.02 1.51 16 26 C -0.06 -1.39 6.36 -104.92 -0.67 -2.06 16 27 C -0.09 -1.81 10.09 -39.36 -0.40 -2.20 16 28 C -0.16 -2.86 10.03 -39.55 -0.40 -3.26 16 29 C -0.14 -2.51 10.01 -39.55 -0.40 -2.91 16 30 C -0.10 -2.07 9.93 -39.42 -0.39 -2.46 16 31 C 0.05 1.16 6.73 -83.83 -0.56 0.59 16 32 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 33 H 0.18 4.11 5.69 -52.49 -0.30 3.81 16 34 H 0.11 1.83 4.51 -51.93 -0.23 1.59 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.17 1.42 7.13 -52.48 -0.37 1.04 16 41 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.07 0.82 6.90 -51.93 -0.36 0.46 16 44 H 0.10 1.58 7.03 -51.93 -0.36 1.22 16 45 H 0.11 2.18 8.06 -52.48 -0.42 1.76 16 46 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 47 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 48 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -29.40 393.22 -10.39 -39.79 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.25 Total: 13.05 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -5.23 Total: -12.92 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.10 Total: -45.12 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.02 Total: 12.33 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.40 -10.39 -39.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072283091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.101 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds