Wall clock time and date at job start Tue Mar 31 2020 05:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86801 * 119.99552 * 2 1 4 4 H 1.48498 * 109.46991 * 239.99915 * 3 2 1 5 5 H 1.48501 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47223 * 119.99849 * 3 2 1 7 7 C 1.38980 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99900 * 177.06650 * 7 2 1 9 9 N 1.37122 * 120.00012 * 357.07097 * 7 2 1 10 10 C 1.35884 * 124.84161 * 28.10398 * 9 7 2 11 11 C 1.36386 * 109.73174 * 179.97438 * 10 9 7 12 12 C 1.46939 * 126.72812 * 180.02562 * 11 10 9 13 13 O 1.21671 * 119.99831 * 229.06788 * 12 11 10 14 14 N 1.34769 * 119.99965 * 49.06225 * 12 11 10 15 15 C 1.46925 * 120.63454 * 355.71606 * 14 12 11 16 16 C 1.53196 * 108.77694 * 126.36807 * 15 14 12 17 17 C 1.53038 * 109.30853 * 54.63682 * 16 15 14 18 18 C 1.53040 * 109.54190 * 298.63386 * 17 16 15 19 19 H 1.09004 * 109.49915 * 301.38734 * 18 17 16 20 20 N 1.46502 * 109.49771 * 181.31857 * 18 17 16 21 21 C 1.34947 * 126.03561 * 274.71352 * 20 18 17 22 22 C 1.35322 * 107.74427 * 179.84098 * 21 20 18 23 23 C 1.39873 * 107.91882 * 0.43004 * 22 21 20 24 24 N 1.30842 * 108.20184 * 359.73199 * 23 22 21 25 25 C 1.46932 * 120.63012 * 175.69405 * 14 12 11 26 26 C 1.47571 * 106.54522 * 0.25919 * 11 10 9 27 27 C 1.39185 * 133.94188 * 180.51699 * 26 11 10 28 28 C 1.37890 * 119.67865 * 179.59481 * 27 26 11 29 29 C 1.38675 * 120.28660 * 359.65174 * 28 27 26 30 30 C 1.37891 * 120.61029 * 0.04021 * 29 28 27 31 31 C 1.38315 * 124.83799 * 208.06327 * 9 7 2 32 32 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 33 33 H 1.07995 * 125.13401 * 359.96095 * 10 9 7 34 34 H 1.08998 * 109.58624 * 6.58795 * 15 14 12 35 35 H 1.08991 * 109.59172 * 246.15811 * 15 14 12 36 36 H 1.09000 * 109.49631 * 294.68774 * 16 15 14 37 37 H 1.08998 * 109.49795 * 174.59041 * 16 15 14 38 38 H 1.09005 * 109.45780 * 178.61700 * 17 16 15 39 39 H 1.09000 * 109.45206 * 58.65480 * 17 16 15 40 40 H 1.08004 * 126.12843 * 0.02562 * 21 20 18 41 41 H 1.07996 * 126.03835 * 180.16344 * 22 21 20 42 42 H 1.08002 * 125.89683 * 179.76442 * 23 22 21 43 43 H 1.09002 * 109.58638 * 113.84417 * 25 14 12 44 44 H 1.08999 * 109.58154 * 353.42304 * 25 14 12 45 45 H 1.08005 * 120.16123 * 359.24508 * 27 26 11 46 46 H 1.08004 * 119.85595 * 179.66631 * 28 27 26 47 47 H 1.08001 * 119.69000 * 180.02562 * 29 28 27 48 48 H 1.07995 * 120.03446 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2822 2.7465 -0.0006 6 1 3.1009 1.6966 1.2125 7 6 2.0083 -1.2036 0.0005 8 1 3.0873 -1.2041 -0.0473 9 7 1.3241 -2.3903 0.0617 10 6 0.0621 -2.5837 -0.4034 11 6 -0.3159 -3.8759 -0.1858 12 6 -1.6042 -4.4865 -0.5417 13 8 -2.2184 -5.1357 0.2839 14 7 -2.1054 -4.3272 -1.7825 15 6 -1.4231 -3.4696 -2.7612 16 6 -1.1799 -4.2775 -4.0399 17 6 -2.5075 -4.8590 -4.5313 18 6 -3.0797 -5.7989 -3.4676 19 1 -2.3648 -6.5961 -3.2640 20 7 -4.3346 -6.3792 -3.9520 21 6 -5.5582 -5.8184 -3.8550 22 6 -6.4467 -6.6665 -4.4228 23 6 -5.7433 -7.7883 -4.8737 24 7 -4.4771 -7.6171 -4.5920 25 6 -3.3444 -5.0082 -2.1825 26 6 0.8205 -4.5393 0.4823 27 6 1.0486 -5.8326 0.9435 28 6 2.2556 -6.1443 1.5329 29 6 3.2420 -5.1779 1.6602 30 6 3.0310 -3.8946 1.2017 31 6 1.8205 -3.5614 0.6050 32 1 -0.4850 0.8400 0.0004 33 1 -0.5494 -1.8281 -0.8740 34 1 -0.4692 -3.1363 -2.3526 35 1 -2.0476 -2.6057 -2.9882 36 1 -0.4827 -5.0888 -3.8305 37 1 -0.7614 -3.6266 -4.8074 38 1 -2.3412 -5.4140 -5.4546 39 1 -3.2123 -4.0485 -4.7168 40 1 -5.7868 -4.8625 -3.4073 41 1 -7.5115 -6.5074 -4.5085 42 1 -6.1714 -8.6471 -5.3693 43 1 -4.1257 -4.2697 -2.3623 44 1 -3.6581 -5.6900 -1.3920 45 1 0.2818 -6.5869 0.8454 46 1 2.4337 -7.1455 1.8966 47 1 4.1839 -5.4327 2.1230 48 1 3.8055 -3.1492 1.3061 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072283091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:42 Heat of formation + Delta-G solvation = 94.359396 kcal Electronic energy + Delta-G solvation = -32625.578577 eV Core-core repulsion = 28454.024344 eV Total energy + Delta-G solvation = -4171.554233 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.34859 -42.07357 -40.67656 -38.39162 -37.93024 -35.22613 -34.76042 -33.13151 -32.87205 -31.00407 -30.64394 -30.31477 -29.34135 -27.50799 -26.31713 -24.81165 -23.51901 -23.33048 -22.45490 -22.24246 -21.92918 -20.85418 -19.82397 -19.48716 -18.54220 -17.95957 -17.33365 -17.07777 -16.67379 -16.15239 -16.09586 -16.01463 -15.84360 -15.74160 -15.30757 -15.12900 -14.95209 -14.69674 -14.49737 -14.39024 -14.19267 -13.99876 -13.71170 -13.59255 -13.49825 -13.22699 -13.11783 -12.85391 -12.57266 -12.37853 -12.31778 -12.18901 -12.09578 -12.01583 -11.88749 -11.69018 -11.62540 -11.06509 -10.92326 -10.42854 -10.37320 -9.79768 -9.48067 -8.98359 -8.75438 -8.48097 -6.39083 0.35114 0.84376 0.97869 1.28558 1.33086 1.39619 1.52368 1.57438 1.98136 2.08461 2.09268 2.31986 2.83836 2.93903 3.21433 3.29869 3.49113 3.78981 3.83445 3.92004 4.02627 4.05834 4.11016 4.14601 4.32512 4.35321 4.39628 4.42513 4.55323 4.62477 4.67366 4.70809 4.74020 4.79559 4.89712 4.92166 4.97116 5.01386 5.06872 5.16614 5.17395 5.22308 5.24700 5.31840 5.49138 5.64570 5.74850 5.77845 5.82542 6.07303 6.10889 6.27380 6.36079 6.50329 6.78858 6.96240 7.23452 7.41532 8.36721 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.002927 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.390846 B = 9563.195040 C =11251.699147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.009 3.991 3 Si 1.011 2.989 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.371 4.371 8 H 0.114 0.886 9 N -0.293 5.293 10 C 0.127 3.873 11 C -0.329 4.329 12 C 0.610 3.390 13 O -0.594 6.594 14 N -0.602 5.602 15 C 0.096 3.904 16 C -0.121 4.121 17 C -0.114 4.114 18 C 0.158 3.842 19 H 0.082 0.918 20 N -0.373 5.373 21 C 0.048 3.952 22 C -0.279 4.279 23 C 0.038 3.962 24 N -0.341 5.341 25 C 0.114 3.886 26 C -0.091 4.091 27 C -0.107 4.107 28 C -0.144 4.144 29 C -0.125 4.125 30 C -0.116 4.116 31 C 0.021 3.979 32 H 0.288 0.712 33 H 0.180 0.820 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.196 0.804 41 H 0.172 0.828 42 H 0.208 0.792 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.146 0.854 47 H 0.153 0.847 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 -3.929 -10.175 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.197 4.197 3 Si 0.832 3.168 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.498 4.498 8 H 0.131 0.869 9 N 0.045 4.955 10 C -0.015 4.015 11 C -0.340 4.340 12 C 0.403 3.597 13 O -0.476 6.476 14 N -0.335 5.335 15 C -0.026 4.026 16 C -0.159 4.159 17 C -0.152 4.152 18 C 0.054 3.946 19 H 0.100 0.900 20 N -0.155 5.155 21 C -0.098 4.098 22 C -0.308 4.308 23 C -0.147 4.147 24 N -0.163 5.163 25 C -0.010 4.010 26 C -0.096 4.096 27 C -0.126 4.126 28 C -0.162 4.162 29 C -0.144 4.144 30 C -0.136 4.136 31 C -0.086 4.086 32 H 0.099 0.901 33 H 0.197 0.803 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.213 0.787 41 H 0.189 0.811 42 H 0.225 0.775 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.123 0.877 46 H 0.163 0.837 47 H 0.171 0.829 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.126 -4.242 -9.779 11.430 hybrid contribution -0.766 1.022 0.385 1.334 sum -4.892 -3.220 -9.394 11.070 Atomic orbital electron populations 1.69804 1.07684 1.30471 1.43177 1.26491 0.96548 1.03496 0.93158 0.84709 0.77764 0.74512 0.79827 1.17898 1.19721 1.19148 1.20234 0.93578 0.81734 1.54235 0.86861 1.40167 1.11066 1.07099 1.37197 1.22350 0.87372 0.94533 0.97229 1.19515 0.96670 0.95775 1.21990 1.17479 0.83335 0.77839 0.81087 1.90651 1.61730 1.44861 1.50380 1.47817 1.25566 1.48136 1.11976 1.22154 0.99007 0.92957 0.88491 1.21856 0.96717 1.00353 0.97015 1.21871 0.97578 0.98635 0.97141 1.21461 0.82891 0.95993 0.94220 0.89995 1.48771 1.06727 1.14408 1.45608 1.23110 0.84669 1.01210 1.00823 1.21870 1.01889 0.96206 1.10882 1.24460 0.90268 1.00477 0.99492 1.77349 1.21273 0.99594 1.18043 1.21700 0.87226 0.96875 0.95179 1.18909 0.93291 0.94360 1.03037 1.20473 0.97914 0.93978 1.00232 1.21073 0.92942 1.00459 1.01773 1.20982 1.00306 0.91474 1.01664 1.20286 0.94452 0.97924 1.00948 1.18901 0.97371 0.87585 1.04696 0.90129 0.80340 0.89664 0.89360 0.92287 0.87379 0.90558 0.89326 0.78697 0.81094 0.77503 0.88425 0.90661 0.87738 0.83658 0.82893 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.00 10.72 21.66 0.23 -41.77 16 2 C 0.01 0.42 5.45 84.95 0.46 0.88 16 3 Si 1.01 35.25 29.55 68.60 2.03 37.28 16 4 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 6 H -0.27 -9.25 7.11 99.48 0.71 -8.55 16 7 C -0.37 -17.88 9.87 84.04 0.83 -17.05 16 8 H 0.11 5.13 7.83 -2.91 -0.02 5.11 16 9 N -0.29 -14.60 2.89 -342.12 -0.99 -15.59 16 10 C 0.13 6.12 7.51 83.63 0.63 6.74 16 11 C -0.33 -15.66 5.35 -18.97 -0.10 -15.76 16 12 C 0.61 27.04 7.59 86.52 0.66 27.69 16 13 O -0.59 -29.86 16.54 -4.26 -0.07 -29.93 16 14 N -0.60 -20.36 2.97 -823.32 -2.45 -22.81 16 15 C 0.10 2.73 5.83 86.36 0.50 3.23 16 16 C -0.12 -2.70 6.08 30.67 0.19 -2.51 16 17 C -0.11 -2.33 5.49 30.62 0.17 -2.16 16 18 C 0.16 3.98 3.35 45.07 0.15 4.13 16 19 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 20 N -0.37 -9.27 3.53 -327.11 -1.16 -10.42 16 21 C 0.05 0.95 10.58 83.54 0.88 1.83 16 22 C -0.28 -5.10 10.80 21.99 0.24 -4.86 16 23 C 0.04 0.80 12.03 85.24 1.03 1.82 16 24 N -0.34 -9.31 12.58 -57.02 -0.72 -10.03 16 25 C 0.11 3.20 5.45 86.36 0.47 3.67 16 26 C -0.09 -4.35 6.36 -20.06 -0.13 -4.48 16 27 C -0.11 -4.55 10.09 22.42 0.23 -4.33 16 28 C -0.14 -5.03 10.03 22.29 0.22 -4.81 16 29 C -0.13 -4.24 10.01 22.29 0.22 -4.01 16 30 C -0.12 -4.69 9.93 22.37 0.22 -4.47 16 31 C 0.02 1.02 6.73 38.83 0.26 1.29 16 32 H 0.29 12.73 8.31 -92.71 -0.77 11.96 16 33 H 0.18 8.51 5.69 -2.91 -0.02 8.49 16 34 H 0.09 2.96 4.51 -2.39 -0.01 2.94 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.20 2.71 7.13 -2.91 -0.02 2.69 16 41 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.21 2.80 8.06 -2.91 -0.02 2.77 16 43 H 0.10 2.18 6.90 -2.39 -0.02 2.16 16 44 H 0.07 2.51 7.03 -2.39 -0.02 2.49 16 45 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 46 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 47 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 48 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -67.81 393.22 5.00 -62.81 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: 0.99 Total: 43.64 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 7.13 Total: -13.17 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -5.07 Total: -100.62 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.07 Total: -29.93 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -67.81 5.00 -62.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072283091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.165 kcal (2) G-P(sol) polarization free energy of solvation -67.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds