Wall clock time and date at job start Tue Mar 31 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86796 * 119.99765 * 2 1 4 4 H 1.48500 * 109.47328 * 90.00272 * 3 2 1 5 5 H 1.48507 * 109.46708 * 209.99605 * 3 2 1 6 6 H 1.48494 * 109.47518 * 329.99359 * 3 2 1 7 7 C 1.38976 * 119.99757 * 179.72020 * 2 1 3 8 8 H 1.07997 * 120.00021 * 155.45688 * 7 2 1 9 9 N 1.37134 * 120.00378 * 335.46196 * 7 2 1 10 10 C 1.35893 * 124.83750 * 332.65343 * 9 7 2 11 11 C 1.36377 * 109.73206 * 179.97438 * 10 9 7 12 12 C 1.46934 * 126.73004 * 180.02562 * 11 10 9 13 13 O 1.21676 * 120.00131 * 129.78472 * 12 11 10 14 14 N 1.34775 * 119.99758 * 309.78512 * 12 11 10 15 15 C 1.46923 * 120.63084 * 5.23540 * 14 12 11 16 16 C 1.52759 * 109.00867 * 233.58181 * 15 14 12 17 17 C 1.53035 * 109.38513 * 305.58897 * 16 15 14 18 18 C 1.53045 * 109.53535 * 61.24093 * 17 16 15 19 19 H 1.08992 * 109.49713 * 58.58664 * 18 17 16 20 20 N 1.46506 * 109.49351 * 178.68528 * 18 17 16 21 21 C 1.34946 * 126.03929 * 84.55628 * 20 18 17 22 22 C 1.35320 * 107.74505 * 179.83681 * 21 20 18 23 23 C 1.39874 * 107.91922 * 0.41921 * 22 21 20 24 24 N 1.30842 * 108.20085 * 359.74054 * 23 22 21 25 25 C 1.46920 * 120.63028 * 185.51448 * 14 12 11 26 26 C 1.47579 * 106.54384 * 359.97438 * 11 10 9 27 27 C 1.39180 * 133.93962 * 180.02562 * 26 11 10 28 28 C 1.37901 * 119.67501 * 179.26115 * 27 26 11 29 29 C 1.38684 * 120.28351 * 0.63913 * 28 27 26 30 30 C 1.37898 * 120.60706 * 359.56979 * 29 28 27 31 31 C 1.38309 * 124.84352 * 152.34635 * 9 7 2 32 32 H 0.96995 * 119.99718 * 174.19957 * 1 2 3 33 33 H 1.08003 * 125.13203 * 359.97438 * 10 9 7 34 34 H 1.09003 * 109.59077 * 353.42288 * 15 14 12 35 35 H 1.09002 * 109.58438 * 113.84416 * 15 14 12 36 36 H 1.08999 * 109.56433 * 185.55333 * 16 15 14 37 37 H 1.09008 * 109.38583 * 65.52230 * 16 15 14 38 38 H 1.08998 * 109.46174 * 301.22181 * 17 16 15 39 39 H 1.09004 * 109.46258 * 181.25467 * 17 16 15 40 40 H 1.08002 * 126.12496 * 359.97438 * 21 20 18 41 41 H 1.07999 * 126.04115 * 180.15991 * 22 21 20 42 42 H 1.07997 * 125.89560 * 179.71608 * 23 22 21 43 43 H 1.09000 * 109.59207 * 246.15791 * 25 14 12 44 44 H 1.09009 * 109.58777 * 6.43785 * 25 14 12 45 45 H 1.07994 * 120.16639 * 359.97363 * 27 26 11 46 46 H 1.07993 * 119.86053 * 180.23375 * 28 27 26 47 47 H 1.08002 * 119.69101 * 179.59925 * 29 28 27 48 48 H 1.08004 * 120.03095 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4949 2.0464 1.4000 5 1 3.5450 1.4401 -0.7000 6 1 1.4450 2.6526 -0.7001 7 6 2.0083 -1.2036 0.0059 8 1 3.0151 -1.2478 -0.3824 9 7 1.4155 -2.3352 0.5046 10 6 0.4450 -2.3484 1.4557 11 6 0.0778 -3.6347 1.7210 12 6 -0.9389 -4.0772 2.6851 13 8 -1.8043 -4.8600 2.3403 14 7 -0.9129 -3.6161 3.9512 15 6 0.0538 -2.5851 4.3527 16 6 0.8304 -3.0791 5.5719 17 6 -0.1540 -3.4809 6.6726 18 6 -1.0451 -4.6197 6.1714 19 1 -0.4241 -5.4683 5.8845 20 7 -1.9660 -5.0248 7.2364 21 6 -3.1518 -4.4478 7.5227 22 6 -3.6938 -5.1153 8.5676 23 6 -2.8044 -6.1292 8.9385 24 7 -1.7683 -6.0758 8.1412 25 6 -1.8467 -4.1391 4.9577 26 6 0.9010 -4.4950 0.8492 27 6 0.9918 -5.8706 0.6576 28 6 1.8782 -6.3735 -0.2714 29 6 2.6859 -5.5158 -1.0031 30 6 2.6087 -4.1513 -0.8196 31 6 1.7159 -3.6254 0.1070 32 1 -0.4849 -0.8357 -0.0849 33 1 0.0275 -1.4724 1.9299 34 1 0.7463 -2.3943 3.5328 35 1 -0.4757 -1.6671 4.6076 36 1 1.4802 -2.2840 5.9375 37 1 1.4343 -3.9421 5.2910 38 1 -0.7738 -2.6239 6.9360 39 1 0.3993 -3.8126 7.5513 40 1 -3.5908 -3.6056 7.0084 41 1 -4.6432 -4.9004 9.0354 42 1 -2.9480 -6.8339 9.7441 43 1 -2.5345 -3.3505 5.2630 44 1 -2.4098 -4.9718 4.5360 45 1 0.3630 -6.5403 1.2253 46 1 1.9485 -7.4401 -0.4252 47 1 3.3814 -5.9204 -1.7236 48 1 3.2419 -3.4918 -1.3948 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072283092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:48 Heat of formation + Delta-G solvation = 105.613939 kcal Electronic energy + Delta-G solvation = -32672.358432 eV Core-core repulsion = 28501.292233 eV Total energy + Delta-G solvation = -4171.066199 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.40388 -40.74874 -39.42727 -37.13409 -36.54353 -33.93652 -33.40381 -32.12157 -31.29226 -30.17155 -29.41020 -28.81851 -28.05090 -26.00977 -24.79288 -23.79975 -22.20959 -21.94475 -21.44840 -21.02969 -20.79628 -19.83621 -18.57112 -18.33711 -17.42465 -16.63465 -16.06567 -15.59457 -15.24143 -15.19744 -14.88228 -14.77974 -14.65605 -14.30226 -14.11834 -14.02114 -13.76137 -13.53483 -13.24052 -13.19728 -13.02785 -12.85572 -12.66921 -12.59614 -12.11010 -11.85549 -11.60381 -11.41501 -11.20818 -11.18719 -10.96310 -10.90829 -10.80646 -10.74274 -10.62174 -10.52822 -10.13616 -9.56369 -9.44074 -9.30097 -8.85588 -8.75801 -8.48222 -7.52011 -7.47347 -6.97391 -4.63463 1.79131 1.80166 2.22719 2.31315 2.75030 2.82656 3.02244 3.08383 3.21033 3.25825 3.67659 3.80181 4.24796 4.31835 4.46453 4.50353 4.64981 4.73028 4.74811 4.82468 4.89700 5.03527 5.25579 5.32559 5.40812 5.48174 5.51957 5.55641 5.59774 5.64373 5.71248 5.75906 5.76333 5.85583 5.89438 5.96522 6.02435 6.12290 6.19305 6.37315 6.48736 6.53309 6.57149 6.68493 6.76283 6.93236 7.08233 7.17872 7.27812 7.50913 7.53148 7.61062 7.65432 7.71956 7.99326 8.59511 8.67641 8.90954 9.93576 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.002993 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.256767 B = 9352.266700 C =11066.396460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.026 3.974 3 Si 1.085 2.915 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.436 4.436 8 H 0.106 0.894 9 N -0.267 5.267 10 C 0.072 3.928 11 C -0.292 4.292 12 C 0.612 3.388 13 O -0.550 6.550 14 N -0.612 5.612 15 C 0.096 3.904 16 C -0.130 4.130 17 C -0.126 4.126 18 C 0.148 3.852 19 H 0.106 0.894 20 N -0.361 5.361 21 C 0.055 3.945 22 C -0.278 4.278 23 C 0.040 3.960 24 N -0.296 5.296 25 C 0.110 3.890 26 C -0.064 4.064 27 C -0.085 4.085 28 C -0.153 4.153 29 C -0.137 4.137 30 C -0.097 4.097 31 C 0.048 3.952 32 H 0.289 0.711 33 H 0.161 0.839 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.172 0.828 41 H 0.146 0.854 42 H 0.181 0.819 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 -2.744 12.333 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.188 4.188 3 Si 0.907 3.093 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.124 0.876 9 N 0.073 4.927 10 C -0.069 4.069 11 C -0.303 4.303 12 C 0.405 3.595 13 O -0.427 6.427 14 N -0.346 5.346 15 C -0.027 4.027 16 C -0.169 4.169 17 C -0.165 4.165 18 C 0.045 3.955 19 H 0.124 0.876 20 N -0.143 5.143 21 C -0.091 4.091 22 C -0.308 4.308 23 C -0.146 4.146 24 N -0.117 5.117 25 C -0.014 4.014 26 C -0.069 4.069 27 C -0.104 4.104 28 C -0.172 4.172 29 C -0.157 4.157 30 C -0.117 4.117 31 C -0.060 4.060 32 H 0.102 0.898 33 H 0.178 0.822 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.189 0.811 41 H 0.163 0.837 42 H 0.198 0.802 43 H 0.088 0.912 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.171 -1.707 11.610 11.736 hybrid contribution -0.761 -1.173 0.180 1.410 sum -0.590 -2.880 11.790 12.151 Atomic orbital electron populations 1.70666 1.07247 1.32910 1.35365 1.26877 0.95933 1.03130 0.92895 0.83275 0.74879 0.73017 0.78099 1.20016 1.20217 1.20049 1.20842 1.01658 0.86484 1.47282 0.87589 1.40058 1.24974 1.04096 1.23560 1.21707 0.95091 0.96548 0.93578 1.19097 1.09055 0.92731 1.09412 1.17517 0.82992 0.78751 0.80274 1.90712 1.37281 1.36563 1.78184 1.47874 1.36295 1.41454 1.08990 1.21950 0.92243 0.89877 0.98590 1.21838 0.97807 1.02544 0.94712 1.21962 0.97928 0.97390 0.99221 1.21693 0.90322 0.99025 0.84422 0.87580 1.48788 1.15568 1.24246 1.25674 1.22564 0.88118 0.99886 0.98562 1.21491 1.03947 1.02096 1.03225 1.23874 0.92104 0.99299 0.99315 1.77387 1.23693 1.06718 1.03918 1.21629 0.91737 1.00595 0.87467 1.18488 0.97750 0.92413 0.98262 1.20298 0.98493 0.93079 0.98486 1.20655 0.99007 0.98547 0.98995 1.20536 1.01242 0.92350 1.01524 1.19970 0.98838 0.94740 0.98104 1.18403 1.01949 0.84725 1.00946 0.89843 0.82201 0.87275 0.91444 0.89742 0.90821 0.91087 0.90843 0.81089 0.83662 0.80195 0.91177 0.88175 0.87249 0.87197 0.86964 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.74 12.64 55.50 0.70 -20.04 16 2 C 0.03 0.60 5.10 -17.49 -0.09 0.51 16 3 Si 1.08 19.83 29.99 -169.99 -5.10 14.73 16 4 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.28 -4.80 7.11 56.52 0.40 -4.40 16 6 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.44 -10.34 9.71 -14.91 -0.14 -10.48 16 8 H 0.11 2.45 7.94 -52.49 -0.42 2.03 16 9 N -0.27 -6.30 2.73 -59.49 -0.16 -6.46 16 10 C 0.07 1.60 6.63 -16.42 -0.11 1.49 16 11 C -0.29 -6.37 5.33 -103.24 -0.55 -6.92 16 12 C 0.61 12.44 7.58 -12.74 -0.10 12.34 16 13 O -0.55 -12.69 16.55 5.21 0.09 -12.60 16 14 N -0.61 -9.67 2.98 -174.48 -0.52 -10.19 16 15 C 0.10 1.31 5.85 -3.94 -0.02 1.28 16 16 C -0.13 -1.45 6.06 -26.84 -0.16 -1.61 16 17 C -0.13 -1.33 5.49 -26.69 -0.15 -1.48 16 18 C 0.15 1.82 3.35 -67.81 -0.23 1.59 16 19 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 20 N -0.36 -4.50 3.53 -54.74 -0.19 -4.69 16 21 C 0.06 0.59 10.58 -17.22 -0.18 0.40 16 22 C -0.28 -2.79 10.80 -40.01 -0.43 -3.22 16 23 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 24 N -0.30 -4.03 12.58 30.63 0.39 -3.65 16 25 C 0.11 1.48 5.46 -3.71 -0.02 1.46 16 26 C -0.06 -1.44 6.36 -104.92 -0.67 -2.11 16 27 C -0.08 -1.73 10.09 -39.35 -0.40 -2.13 16 28 C -0.15 -2.76 10.03 -39.54 -0.40 -3.15 16 29 C -0.14 -2.45 10.02 -39.54 -0.40 -2.84 16 30 C -0.10 -1.97 9.93 -39.42 -0.39 -2.36 16 31 C 0.05 1.09 6.73 -83.84 -0.56 0.53 16 32 H 0.29 7.53 6.91 -40.82 -0.28 7.25 16 33 H 0.16 3.44 6.67 -52.48 -0.35 3.09 16 34 H 0.11 1.74 4.51 -51.93 -0.23 1.50 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.17 1.37 7.14 -52.49 -0.37 0.99 16 41 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.18 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.07 0.80 6.91 -51.93 -0.36 0.44 16 44 H 0.10 1.55 7.04 -51.92 -0.37 1.18 16 45 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 46 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 47 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 48 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -29.71 393.79 -10.32 -40.04 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.25 Total: 13.41 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -5.21 Total: -16.48 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.21 Total: -45.03 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.10 Total: 14.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.71 -10.32 -40.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072283092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.652 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds