Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86796 * 119.99765 * 2 1 4 4 H 1.48500 * 109.47328 * 90.00272 * 3 2 1 5 5 H 1.48507 * 109.46708 * 209.99605 * 3 2 1 6 6 H 1.48494 * 109.47518 * 329.99359 * 3 2 1 7 7 C 1.38976 * 119.99757 * 179.72020 * 2 1 3 8 8 H 1.07997 * 120.00021 * 155.45688 * 7 2 1 9 9 N 1.37134 * 120.00378 * 335.46196 * 7 2 1 10 10 C 1.35893 * 124.83750 * 332.65343 * 9 7 2 11 11 C 1.36377 * 109.73206 * 179.97438 * 10 9 7 12 12 C 1.46934 * 126.73004 * 180.02562 * 11 10 9 13 13 O 1.21676 * 120.00131 * 129.78472 * 12 11 10 14 14 N 1.34775 * 119.99758 * 309.78512 * 12 11 10 15 15 C 1.46923 * 120.63084 * 5.23540 * 14 12 11 16 16 C 1.52759 * 109.00867 * 233.58181 * 15 14 12 17 17 C 1.53035 * 109.38513 * 305.58897 * 16 15 14 18 18 C 1.53045 * 109.53535 * 61.24093 * 17 16 15 19 19 H 1.08992 * 109.49713 * 58.58664 * 18 17 16 20 20 N 1.46506 * 109.49351 * 178.68528 * 18 17 16 21 21 C 1.34946 * 126.03929 * 84.55628 * 20 18 17 22 22 C 1.35320 * 107.74505 * 179.83681 * 21 20 18 23 23 C 1.39874 * 107.91922 * 0.41921 * 22 21 20 24 24 N 1.30842 * 108.20085 * 359.74054 * 23 22 21 25 25 C 1.46920 * 120.63028 * 185.51448 * 14 12 11 26 26 C 1.47579 * 106.54384 * 359.97438 * 11 10 9 27 27 C 1.39180 * 133.93962 * 180.02562 * 26 11 10 28 28 C 1.37901 * 119.67501 * 179.26115 * 27 26 11 29 29 C 1.38684 * 120.28351 * 0.63913 * 28 27 26 30 30 C 1.37898 * 120.60706 * 359.56979 * 29 28 27 31 31 C 1.38309 * 124.84352 * 152.34635 * 9 7 2 32 32 H 0.96995 * 119.99718 * 174.19957 * 1 2 3 33 33 H 1.08003 * 125.13203 * 359.97438 * 10 9 7 34 34 H 1.09003 * 109.59077 * 353.42288 * 15 14 12 35 35 H 1.09002 * 109.58438 * 113.84416 * 15 14 12 36 36 H 1.08999 * 109.56433 * 185.55333 * 16 15 14 37 37 H 1.09008 * 109.38583 * 65.52230 * 16 15 14 38 38 H 1.08998 * 109.46174 * 301.22181 * 17 16 15 39 39 H 1.09004 * 109.46258 * 181.25467 * 17 16 15 40 40 H 1.08002 * 126.12496 * 359.97438 * 21 20 18 41 41 H 1.07999 * 126.04115 * 180.15991 * 22 21 20 42 42 H 1.07997 * 125.89560 * 179.71608 * 23 22 21 43 43 H 1.09000 * 109.59207 * 246.15791 * 25 14 12 44 44 H 1.09009 * 109.58777 * 6.43785 * 25 14 12 45 45 H 1.07994 * 120.16639 * 359.97363 * 27 26 11 46 46 H 1.07993 * 119.86053 * 180.23375 * 28 27 26 47 47 H 1.08002 * 119.69101 * 179.59925 * 29 28 27 48 48 H 1.08004 * 120.03095 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4949 2.0464 1.4000 5 1 3.5450 1.4401 -0.7000 6 1 1.4450 2.6526 -0.7001 7 6 2.0083 -1.2036 0.0059 8 1 3.0151 -1.2478 -0.3824 9 7 1.4155 -2.3352 0.5046 10 6 0.4450 -2.3484 1.4557 11 6 0.0778 -3.6347 1.7210 12 6 -0.9389 -4.0772 2.6851 13 8 -1.8043 -4.8600 2.3403 14 7 -0.9129 -3.6161 3.9512 15 6 0.0538 -2.5851 4.3527 16 6 0.8304 -3.0791 5.5719 17 6 -0.1540 -3.4809 6.6726 18 6 -1.0451 -4.6197 6.1714 19 1 -0.4241 -5.4683 5.8845 20 7 -1.9660 -5.0248 7.2364 21 6 -3.1518 -4.4478 7.5227 22 6 -3.6938 -5.1153 8.5676 23 6 -2.8044 -6.1292 8.9385 24 7 -1.7683 -6.0758 8.1412 25 6 -1.8467 -4.1391 4.9577 26 6 0.9010 -4.4950 0.8492 27 6 0.9918 -5.8706 0.6576 28 6 1.8782 -6.3735 -0.2714 29 6 2.6859 -5.5158 -1.0031 30 6 2.6087 -4.1513 -0.8196 31 6 1.7159 -3.6254 0.1070 32 1 -0.4849 -0.8357 -0.0849 33 1 0.0275 -1.4724 1.9299 34 1 0.7463 -2.3943 3.5328 35 1 -0.4757 -1.6671 4.6076 36 1 1.4802 -2.2840 5.9375 37 1 1.4343 -3.9421 5.2910 38 1 -0.7738 -2.6239 6.9360 39 1 0.3993 -3.8126 7.5513 40 1 -3.5908 -3.6056 7.0084 41 1 -4.6432 -4.9004 9.0354 42 1 -2.9480 -6.8339 9.7441 43 1 -2.5345 -3.3505 5.2630 44 1 -2.4098 -4.9718 4.5360 45 1 0.3630 -6.5403 1.2253 46 1 1.9485 -7.4401 -0.4252 47 1 3.3814 -5.9204 -1.7236 48 1 3.2419 -3.4918 -1.3948 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072283092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = 91.319397 kcal Electronic energy + Delta-G solvation = -32672.978290 eV Core-core repulsion = 28501.292233 eV Total energy + Delta-G solvation = -4171.686057 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.48478 -42.18169 -40.78556 -38.48865 -38.13170 -35.38296 -34.83556 -33.20329 -32.91401 -31.02940 -30.68389 -30.32875 -29.47780 -27.46558 -26.26286 -24.84784 -23.69393 -23.43066 -22.53485 -22.36545 -21.95818 -20.90414 -20.07760 -19.84334 -18.56397 -17.95885 -17.59978 -17.13402 -16.70106 -16.26628 -16.15819 -16.03278 -15.89351 -15.74688 -15.51078 -15.19992 -15.07541 -14.77676 -14.60937 -14.41968 -14.32671 -14.07241 -13.82974 -13.75257 -13.52671 -13.40414 -12.96798 -12.62036 -12.48281 -12.43519 -12.28171 -12.18733 -12.10434 -11.95956 -11.91397 -11.73136 -11.64836 -11.09801 -10.97210 -10.52117 -10.44305 -9.87368 -9.50732 -9.29852 -9.14653 -8.65566 -6.46348 0.17779 0.73914 0.95609 1.19777 1.26700 1.53003 1.60967 1.80094 1.96018 1.98268 2.10246 2.27161 2.66729 2.80218 3.09917 3.25511 3.43733 3.74781 3.77583 3.86580 3.88061 3.91556 4.07672 4.09896 4.12140 4.25883 4.32782 4.35987 4.47840 4.50508 4.56738 4.63953 4.65942 4.75265 4.75744 4.85112 4.89787 4.91940 4.97129 5.02627 5.15480 5.17505 5.19311 5.32861 5.39984 5.61630 5.66658 5.71732 5.75722 5.89450 6.02591 6.08576 6.23280 6.30819 6.76744 6.85923 7.09876 7.18509 8.08107 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.002993 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.256767 B = 9352.266700 C =11066.396460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C -0.006 4.006 3 Si 1.133 2.867 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.280 1.280 7 C -0.454 4.454 8 H 0.105 0.895 9 N -0.288 5.288 10 C 0.077 3.923 11 C -0.300 4.300 12 C 0.608 3.392 13 O -0.588 6.588 14 N -0.601 5.601 15 C 0.093 3.907 16 C -0.121 4.121 17 C -0.114 4.114 18 C 0.158 3.842 19 H 0.082 0.918 20 N -0.373 5.373 21 C 0.048 3.952 22 C -0.279 4.279 23 C 0.039 3.961 24 N -0.341 5.341 25 C 0.114 3.886 26 C -0.092 4.092 27 C -0.103 4.103 28 C -0.140 4.140 29 C -0.120 4.120 30 C -0.117 4.117 31 C 0.021 3.979 32 H 0.269 0.731 33 H 0.159 0.841 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.196 0.804 41 H 0.172 0.828 42 H 0.208 0.792 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -2.514 13.631 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.214 4.214 3 Si 0.950 3.050 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.123 0.877 9 N 0.051 4.949 10 C -0.064 4.064 11 C -0.311 4.311 12 C 0.400 3.600 13 O -0.469 6.469 14 N -0.334 5.334 15 C -0.029 4.029 16 C -0.159 4.159 17 C -0.153 4.153 18 C 0.055 3.945 19 H 0.101 0.899 20 N -0.156 5.156 21 C -0.098 4.098 22 C -0.308 4.308 23 C -0.147 4.147 24 N -0.162 5.162 25 C -0.010 4.010 26 C -0.097 4.097 27 C -0.122 4.122 28 C -0.159 4.159 29 C -0.140 4.140 30 C -0.137 4.137 31 C -0.086 4.086 32 H 0.080 0.920 33 H 0.176 0.824 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.213 0.787 41 H 0.189 0.811 42 H 0.225 0.775 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.167 0.833 47 H 0.173 0.827 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.857 -1.483 12.957 13.069 hybrid contribution -0.996 -1.454 -0.197 1.773 sum -0.139 -2.936 12.759 13.093 Atomic orbital electron populations 1.70795 1.08178 1.31504 1.38287 1.28311 0.95789 1.05964 0.91298 0.82708 0.74196 0.69055 0.79060 1.18258 1.18510 1.20530 1.21053 1.01789 0.87113 1.48063 0.87697 1.40201 1.25918 1.04392 1.24431 1.21697 0.94697 0.96547 0.93456 1.19378 1.09139 0.92743 1.09828 1.17438 0.82380 0.78618 0.81567 1.90675 1.38624 1.38387 1.79232 1.47824 1.36595 1.40965 1.08007 1.22099 0.91842 0.90186 0.98768 1.21776 0.97731 1.02711 0.93725 1.21879 0.97540 0.97178 0.98692 1.21448 0.90097 0.98782 0.84221 0.89935 1.48758 1.16301 1.24721 1.25778 1.23106 0.87407 1.00451 0.98832 1.21876 1.04654 1.01391 1.02904 1.24462 0.91413 0.99628 0.99159 1.77352 1.25573 1.07996 1.05311 1.21722 0.91602 1.00648 0.87042 1.18871 0.98396 0.93555 0.98910 1.20508 0.99653 0.92300 0.99723 1.21124 0.97108 1.00637 0.97051 1.21029 1.00742 0.91142 1.01041 1.20289 0.98988 0.96246 0.98153 1.18901 1.03001 0.84721 1.02011 0.91979 0.82360 0.89769 0.89166 0.87235 0.92287 0.89258 0.90498 0.78672 0.81097 0.77507 0.88315 0.90542 0.87300 0.83278 0.82724 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.14 12.64 21.66 0.27 -43.87 16 2 C -0.01 -0.27 5.10 84.94 0.43 0.16 16 3 Si 1.13 39.66 29.99 68.60 2.06 41.71 16 4 H -0.26 -8.29 7.11 99.48 0.71 -7.59 16 5 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 6 H -0.28 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.45 -22.18 9.71 84.04 0.82 -21.36 16 8 H 0.11 4.97 7.94 -2.91 -0.02 4.95 16 9 N -0.29 -14.17 2.73 -342.13 -0.94 -15.11 16 10 C 0.08 3.57 6.63 83.63 0.55 4.13 16 11 C -0.30 -13.77 5.33 -18.97 -0.10 -13.87 16 12 C 0.61 25.92 7.58 86.52 0.66 26.58 16 13 O -0.59 -28.54 16.55 -4.27 -0.07 -28.61 16 14 N -0.60 -19.45 2.98 -824.16 -2.45 -21.90 16 15 C 0.09 2.51 5.85 86.22 0.50 3.02 16 16 C -0.12 -2.57 6.06 30.53 0.19 -2.38 16 17 C -0.11 -2.23 5.49 30.62 0.17 -2.06 16 18 C 0.16 3.82 3.35 45.07 0.15 3.97 16 19 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 20 N -0.37 -8.98 3.53 -327.11 -1.15 -10.13 16 21 C 0.05 0.91 10.58 83.54 0.88 1.80 16 22 C -0.28 -4.94 10.80 21.99 0.24 -4.70 16 23 C 0.04 0.78 12.03 85.24 1.03 1.81 16 24 N -0.34 -9.08 12.58 -57.02 -0.72 -9.80 16 25 C 0.11 3.05 5.46 86.36 0.47 3.52 16 26 C -0.09 -4.31 6.36 -20.06 -0.13 -4.44 16 27 C -0.10 -4.24 10.09 22.42 0.23 -4.01 16 28 C -0.14 -4.77 10.03 22.30 0.22 -4.55 16 29 C -0.12 -4.02 10.02 22.30 0.22 -3.80 16 30 C -0.12 -4.74 9.93 22.37 0.22 -4.52 16 31 C 0.02 0.99 6.73 38.83 0.26 1.25 16 32 H 0.27 14.77 6.91 -92.71 -0.64 14.13 16 33 H 0.16 7.21 6.67 -2.91 -0.02 7.19 16 34 H 0.08 2.78 4.51 -2.39 -0.01 2.77 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.20 2.56 7.14 -2.91 -0.02 2.54 16 41 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.10 2.09 6.91 -2.39 -0.02 2.07 16 44 H 0.08 2.45 7.04 -2.38 -0.02 2.43 16 45 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 47 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 48 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -68.88 393.79 5.13 -63.75 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: 1.12 Total: 43.41 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 7.02 Total: -19.45 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -4.99 Total: -100.81 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.07 Total: -28.61 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.06 Total: 41.71 kcal Total: -68.88 5.13 -63.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072283092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.072 kcal (2) G-P(sol) polarization free energy of solvation -68.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds