Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46798 * 118.77445 * 3 2 1 5 5 C 1.36951 * 120.00096 * 97.39479 * 4 3 2 6 6 H 1.07994 * 120.00274 * 157.78413 * 5 4 3 7 7 C 1.38993 * 119.99606 * 337.77812 * 5 4 3 8 8 N 1.31394 * 120.00514 * 356.89954 * 7 5 4 9 9 Si 1.86806 * 119.99644 * 176.89187 * 7 5 4 10 10 H 1.48504 * 109.46810 * 90.00198 * 9 7 5 11 11 H 1.48498 * 109.47066 * 210.00552 * 9 7 5 12 12 H 1.48500 * 109.47179 * 330.00393 * 9 7 5 13 13 C 1.34773 * 119.99867 * 277.39547 * 4 3 2 14 14 O 1.21624 * 120.00075 * 176.48584 * 13 4 3 15 15 C 1.47433 * 120.00054 * 356.75765 * 13 4 3 16 16 C 1.36684 * 125.77454 * 187.82377 * 15 13 4 17 17 N 1.35100 * 106.78504 * 179.97438 * 16 15 13 18 18 C 1.40213 * 126.61605 * 179.97438 * 17 16 15 19 19 C 1.38854 * 120.06654 * 5.00374 * 18 17 16 20 20 C 1.38098 * 119.93424 * 179.97438 * 19 18 17 21 21 C 1.38292 * 120.06731 * 359.97252 * 20 19 18 22 22 C 1.38257 * 120.13239 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.96632 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.47354 * 359.97438 * 23 22 21 25 25 F 1.39892 * 109.47159 * 120.00344 * 23 22 21 26 26 F 1.39903 * 109.47114 * 240.00072 * 23 22 21 27 27 C 1.38148 * 120.06668 * 359.74825 * 22 21 20 28 28 N 1.40220 * 106.77206 * 0.02562 * 17 16 15 29 29 N 1.28744 * 108.40668 * 359.76396 * 28 17 16 30 30 H 1.08998 * 109.47423 * 358.77652 * 3 2 1 31 31 H 1.08997 * 109.46912 * 238.76843 * 3 2 1 32 32 H 0.97005 * 120.00270 * 179.97438 * 8 7 5 33 33 H 1.08004 * 126.61322 * 359.97138 * 16 15 13 34 34 H 1.08001 * 120.02819 * 359.94754 * 19 18 17 35 35 H 1.07997 * 119.96209 * 180.02562 * 20 19 18 36 36 H 1.08004 * 119.93433 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.03478 * 180.25099 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.6658 -1.2108 5 6 3.4675 1.9832 -1.1659 6 1 4.1420 2.3797 -1.9103 7 6 2.9763 2.8099 -0.1624 8 7 2.1084 2.3437 0.7070 9 14 3.5502 4.5841 -0.0495 10 1 2.6518 5.4473 -0.8577 11 1 3.5178 5.0256 1.3679 12 1 4.9373 4.6896 -0.5692 13 6 3.1792 -0.0188 -2.3687 14 8 3.5232 0.5492 -3.3876 15 6 2.8474 -1.4549 -2.4015 16 6 3.0326 -2.2938 -3.4646 17 7 2.6010 -3.5143 -3.0784 18 6 2.6011 -4.6845 -3.8509 19 6 3.1738 -4.6830 -5.1158 20 6 3.1728 -5.8371 -5.8741 21 6 2.6027 -6.9938 -5.3746 22 6 2.0317 -6.9984 -4.1155 23 6 1.4120 -8.2612 -3.5746 24 9 1.5357 -9.2839 -4.5211 25 9 2.0667 -8.6342 -2.3960 26 9 0.0575 -8.0375 -3.3049 27 6 2.0338 -5.8482 -3.3503 28 7 2.1518 -3.3850 -1.7564 29 7 2.3159 -2.1620 -1.3891 30 1 2.9718 -1.0266 0.0219 31 1 2.9710 0.5337 0.8787 32 1 1.7659 2.9206 1.4076 33 1 3.4446 -2.0315 -4.4280 34 1 3.6192 -3.7799 -5.5064 35 1 3.6185 -5.8366 -6.8578 36 1 2.6035 -7.8954 -5.9693 37 1 1.5912 -5.8535 -2.3652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072292329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = -14.931516 kcal Electronic energy + Delta-G solvation = -31402.290952 eV Core-core repulsion = 26347.048669 eV Total energy + Delta-G solvation = -5055.242283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.084 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.26079 -48.76923 -48.73264 -43.54739 -40.77665 -40.19917 -37.61983 -36.19952 -35.98183 -33.76283 -33.14329 -32.17842 -31.08608 -29.20463 -27.43762 -27.00318 -25.56084 -24.55039 -23.23785 -22.45320 -21.35461 -20.15206 -19.74849 -19.57974 -19.42605 -18.53399 -18.02691 -17.74319 -17.30941 -17.14467 -16.69462 -16.20164 -16.15086 -15.70383 -15.64104 -15.40977 -15.36051 -15.15335 -15.08701 -14.87759 -14.86114 -14.80368 -14.73371 -14.32472 -13.90012 -13.75487 -13.45267 -13.35447 -13.14720 -13.05888 -12.92098 -12.62742 -12.45489 -12.41056 -12.34672 -12.05728 -11.72883 -11.15245 -10.78913 -10.61005 -10.47039 -9.97265 -9.76878 -8.36237 -6.05493 -0.75728 -0.26840 0.55645 0.62963 0.81634 1.48518 1.49600 1.52515 1.61693 1.91387 2.19452 2.27812 2.33284 2.45498 2.54556 2.81945 2.89797 3.07777 3.22502 3.29527 3.38366 3.57280 3.70251 3.78988 3.81988 3.87907 3.98549 4.11812 4.31365 4.41548 4.56796 4.82958 4.89270 5.02049 5.06242 5.08786 5.27982 5.43801 5.63944 5.97157 6.31997 6.76377 7.01806 7.03994 7.24658 7.78678 8.62053 Molecular weight = 365.08amu Principal moments of inertia in cm(-1) A = 0.021821 B = 0.002198 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.847381 B =12733.051403 C =13660.122198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.279 3.721 3 C 0.221 3.779 4 N -0.434 5.434 5 C -0.330 4.330 6 H 0.099 0.901 7 C -0.001 4.001 8 N -0.898 5.898 9 Si 1.000 3.000 10 H -0.284 1.284 11 H -0.273 1.273 12 H -0.258 1.258 13 C 0.523 3.477 14 O -0.599 6.599 15 C -0.091 4.091 16 C 0.103 3.897 17 N -0.308 5.308 18 C 0.113 3.887 19 C -0.085 4.085 20 C -0.077 4.077 21 C -0.060 4.060 22 C -0.172 4.172 23 C 0.513 3.487 24 F -0.168 7.168 25 F -0.181 7.181 26 F -0.183 7.183 27 C -0.073 4.073 28 N -0.085 5.085 29 N -0.221 5.221 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.277 0.723 33 H 0.245 0.755 34 H 0.172 0.828 35 H 0.194 0.806 36 H 0.174 0.826 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 -21.656 -13.190 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.038 4.038 3 C 0.094 3.906 4 N -0.151 5.151 5 C -0.457 4.457 6 H 0.117 0.883 7 C -0.202 4.202 8 N -0.537 5.537 9 Si 0.824 3.176 10 H -0.211 1.211 11 H -0.197 1.197 12 H -0.182 1.182 13 C 0.311 3.689 14 O -0.484 6.484 15 C -0.229 4.229 16 C -0.050 4.050 17 N -0.087 5.087 18 C 0.022 3.978 19 C -0.106 4.106 20 C -0.095 4.095 21 C -0.078 4.078 22 C -0.174 4.174 23 C 0.458 3.542 24 F -0.149 7.149 25 F -0.162 7.162 26 F -0.164 7.164 27 C -0.094 4.094 28 N -0.063 5.063 29 N -0.094 5.094 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.087 0.913 33 H 0.261 0.739 34 H 0.190 0.810 35 H 0.211 0.789 36 H 0.192 0.808 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.888 -22.010 -12.223 25.474 hybrid contribution 0.306 1.271 0.111 1.312 sum 4.194 -20.739 -12.113 24.381 Atomic orbital electron populations 1.80828 1.14729 1.14237 1.10572 1.29488 0.95536 0.88022 0.90714 1.19292 0.80537 0.99141 0.91606 1.43590 1.54289 1.10666 1.06559 1.19884 1.27086 0.84468 1.14275 0.88340 1.26188 0.94852 1.04034 0.95161 1.69890 1.28930 1.38096 1.16800 0.84806 0.78925 0.76245 0.77655 1.21066 1.19743 1.18169 1.16993 0.84056 0.84307 0.83573 1.90612 1.54767 1.69967 1.33097 1.21697 1.11680 0.96784 0.92717 1.23718 0.97072 0.82387 1.01858 1.47639 1.41761 1.07516 1.11785 1.17738 1.04416 0.83180 0.92475 1.21692 0.96431 1.02393 0.90039 1.21546 0.97085 0.89354 1.01511 1.21610 0.92644 1.01347 0.92233 1.19800 1.07009 0.92013 0.98596 1.18208 0.76077 0.84248 0.75622 1.93182 1.95660 1.61865 1.64220 1.93231 1.81010 1.92579 1.49421 1.93234 1.34487 1.94736 1.93992 1.20516 0.97677 0.90594 1.00596 1.81968 1.20813 1.12252 0.91237 1.74794 1.10834 0.99028 1.24714 0.86159 0.84586 0.91305 0.73926 0.81049 0.78919 0.80842 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -27.57 18.54 20.01 0.37 -27.20 16 2 C 0.28 13.87 12.60 89.44 1.13 15.00 16 3 C 0.22 9.97 4.75 84.57 0.40 10.37 16 4 N -0.43 -21.33 2.61 -649.12 -1.69 -23.02 16 5 C -0.33 -17.04 9.31 84.07 0.78 -16.26 16 6 H 0.10 5.20 7.41 -2.91 -0.02 5.18 16 7 C 0.00 -0.04 5.26 84.94 0.45 0.41 16 8 N -0.90 -45.54 8.86 21.67 0.19 -45.35 16 9 Si 1.00 39.92 29.55 68.60 2.03 41.95 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 12 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 13 C 0.52 24.41 7.53 86.67 0.65 25.06 16 14 O -0.60 -30.16 16.59 -4.11 -0.07 -30.23 16 15 C -0.09 -3.48 6.64 40.80 0.27 -3.21 16 16 C 0.10 2.87 10.61 83.83 0.89 3.76 16 17 N -0.31 -8.25 3.82 -186.83 -0.71 -8.96 16 18 C 0.11 2.17 6.69 38.08 0.25 2.42 16 19 C -0.09 -0.88 9.47 22.38 0.21 -0.67 16 20 C -0.08 -0.39 10.04 22.25 0.22 -0.17 16 21 C -0.06 -0.47 9.43 22.29 0.21 -0.26 16 22 C -0.17 -2.54 5.37 -19.88 -0.11 -2.65 16 23 C 0.51 8.44 3.32 71.24 0.24 8.67 16 24 F -0.17 -2.33 15.97 44.97 0.72 -1.61 16 25 F -0.18 -3.47 17.23 44.97 0.77 -2.69 16 26 F -0.18 -3.62 17.24 44.97 0.78 -2.85 16 27 C -0.07 -1.44 9.23 22.38 0.21 -1.23 16 28 N -0.08 -2.92 13.13 37.02 0.49 -2.43 16 29 N -0.22 -8.59 7.97 -49.99 -0.40 -8.98 16 30 H 0.12 4.88 5.47 -2.39 -0.01 4.86 16 31 H 0.14 6.23 6.07 -2.39 -0.01 6.22 16 32 H 0.28 13.48 8.31 -92.70 -0.77 12.71 16 33 H 0.24 4.56 7.16 -2.91 -0.02 4.54 16 34 H 0.17 0.93 6.84 -2.91 -0.02 0.91 16 35 H 0.19 -0.56 8.06 -2.91 -0.02 -0.58 16 36 H 0.17 0.48 7.15 -2.91 -0.02 0.46 16 37 H 0.13 3.04 7.74 -2.91 -0.02 3.02 16 Total: -1.00 -72.09 347.24 9.47 -62.62 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.19 Total: 7.51 kcal Atomic # 6 Polarization: 35.44 SS G_CDS: 5.81 Total: 41.25 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -1.75 Total: -115.95 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.07 Total: -30.23 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 2.27 Total: -7.15 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -72.09 9.47 -62.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072292329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.690 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds