Wall clock time and date at job start Tue Mar 31 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47879 * 2 1 4 4 C 1.53006 * 109.47239 * 239.99948 * 2 1 3 5 5 C 1.53000 * 117.49478 * 60.00117 * 4 2 1 6 6 C 1.52998 * 60.03237 * 107.47798 * 5 4 2 7 7 N 1.46502 * 109.47059 * 120.00138 * 2 1 3 8 8 C 1.46497 * 120.00144 * 56.50695 * 7 2 1 9 9 C 1.50697 * 109.47416 * 89.99463 * 8 7 2 10 10 H 1.08004 * 120.00161 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99986 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00379 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47541 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47222 * 120.00211 * 13 11 9 16 16 H 1.48510 * 109.46867 * 239.99817 * 13 11 9 17 17 C 1.34776 * 119.99916 * 236.50064 * 7 2 1 18 18 O 1.21577 * 119.99931 * 188.11062 * 17 7 2 19 19 N 1.34775 * 120.00146 * 8.11268 * 17 7 2 20 20 C 1.39431 * 119.99967 * 189.17172 * 19 17 7 21 21 C 1.39203 * 119.91336 * 152.45609 * 20 19 17 22 22 C 1.37602 * 120.11452 * 179.97438 * 21 20 19 23 23 C 1.39809 * 119.93637 * 0.02562 * 22 21 20 24 24 C 1.47505 * 120.08568 * 179.97438 * 23 22 21 25 25 N 1.34774 * 120.00050 * 0.02562 * 24 23 22 26 26 O 1.21591 * 119.99995 * 179.97438 * 24 23 22 27 27 C 1.39879 * 119.82734 * 0.02562 * 23 22 21 28 28 Cl 1.73595 * 120.05387 * 180.02562 * 27 23 22 29 29 C 1.37853 * 119.89050 * 359.71699 * 27 23 22 30 30 H 1.08994 * 109.47523 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46992 * 299.99962 * 1 2 3 32 32 H 1.09004 * 109.47299 * 59.99319 * 1 2 3 33 33 H 1.09002 * 115.55962 * 274.31790 * 4 2 1 34 34 H 1.09003 * 117.49760 * 214.98285 * 5 4 2 35 35 H 1.08998 * 117.49889 * 359.97438 * 5 4 2 36 36 H 1.08998 * 117.49548 * 107.49526 * 6 5 4 37 37 H 1.09003 * 117.49880 * 252.51839 * 6 5 4 38 38 H 1.08999 * 109.47228 * 210.00175 * 8 7 2 39 39 H 1.09010 * 109.46973 * 329.99966 * 8 7 2 40 40 H 0.97001 * 120.00437 * 180.02562 * 12 11 9 41 41 H 0.97001 * 119.99871 * 9.18265 * 19 17 7 42 42 H 1.08004 * 119.93830 * 0.02782 * 21 20 19 43 43 H 1.07996 * 120.03338 * 179.97438 * 22 21 20 44 44 H 0.96998 * 119.99744 * 359.97438 * 25 24 23 45 45 H 0.96997 * 120.00459 * 179.97438 * 25 24 23 46 46 H 1.07994 * 119.97265 * 180.27253 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6357 -0.1495 -2.6096 6 6 3.0742 0.0058 -2.1123 7 7 2.0183 -0.6907 1.1962 8 6 1.6024 -2.0689 1.4673 9 6 2.5768 -3.0231 0.8262 10 1 3.4217 -2.6411 0.2724 11 6 2.3896 -4.3838 0.9465 12 7 1.3606 -4.8491 1.6203 13 14 3.5979 -5.5665 0.1523 14 1 4.6599 -4.7963 -0.5434 15 1 4.2117 -6.4236 1.1981 16 1 2.8821 -6.4201 -0.8299 17 6 2.8503 -0.0580 2.0471 18 8 3.3720 -0.6730 2.9569 19 7 3.1038 1.2562 1.8895 20 6 4.1043 1.8685 2.6434 21 6 4.7644 2.9871 2.1427 22 6 5.7520 3.5950 2.8834 23 6 6.0933 3.0877 4.1408 24 6 7.1518 3.7364 4.9373 25 7 7.7910 4.8198 4.4535 26 8 7.4470 3.2942 6.0308 27 6 5.4290 1.9629 4.6409 28 17 5.8476 1.3286 6.2016 29 6 4.4371 1.3628 3.8951 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 2.1270 -1.8045 -1.1643 34 1 1.4567 -0.8565 -3.4197 35 1 1.0061 0.7402 -2.6145 36 1 3.8417 -0.5991 -2.5952 37 1 3.3909 0.9977 -1.7897 38 1 1.5836 -2.2376 2.5440 39 1 0.6067 -2.2356 1.0560 40 1 1.2291 -5.8064 1.7053 41 1 2.5902 1.7762 1.2517 42 1 4.5003 3.3791 1.1716 43 1 6.2636 4.4625 2.4936 44 1 7.5552 5.1727 3.5813 45 1 8.4869 5.2466 4.9774 46 1 3.9204 0.4969 4.2819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072305973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:31 Heat of formation + Delta-G solvation = 3.974506 kcal Electronic energy + Delta-G solvation = -30827.475958 eV Core-core repulsion = 26551.850830 eV Total energy + Delta-G solvation = -4275.625127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 4.55 seconds Orbital eigenvalues (eV) -40.76730 -39.80421 -38.39764 -37.41607 -36.27395 -34.87180 -34.52842 -33.75541 -32.65314 -30.82610 -30.14049 -29.73553 -27.22812 -24.25121 -24.14583 -23.00050 -22.58095 -22.07465 -20.82444 -20.55707 -19.04107 -18.54587 -18.14824 -17.26916 -16.84129 -16.55602 -15.33417 -15.23615 -15.15713 -15.06114 -14.85175 -14.55473 -14.38339 -14.26347 -13.83310 -13.75176 -13.35460 -13.06397 -12.93722 -12.71045 -12.37193 -12.13743 -11.82112 -11.66662 -11.48803 -11.34596 -11.23770 -11.07146 -10.94250 -10.83665 -10.56365 -10.35433 -10.29423 -9.89765 -9.83480 -9.81397 -9.62966 -9.51936 -9.26341 -8.79597 -8.46520 -8.23602 -7.75051 -6.08586 -4.11515 0.67491 1.16214 2.26909 2.74682 2.91044 3.27262 3.35911 3.36556 3.39699 3.51942 3.77714 3.98234 4.25913 4.42384 4.54378 4.68241 4.81925 4.93847 5.09061 5.15714 5.19788 5.23421 5.29975 5.34684 5.54956 5.63224 5.68292 5.76011 5.87895 5.90818 6.00198 6.02856 6.13147 6.20215 6.28946 6.34646 6.42936 6.61393 6.66175 6.87813 6.91478 7.15425 7.25802 7.39736 7.51231 7.88533 8.15037 8.18094 8.38888 8.86848 9.03527 9.52745 10.99447 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.002963 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.422507 B = 9447.145514 C =10898.328713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.174 3.826 3 H 0.064 0.936 4 C -0.155 4.155 5 C -0.181 4.181 6 C -0.183 4.183 7 N -0.595 5.595 8 C 0.259 3.741 9 C -0.521 4.521 10 H 0.061 0.939 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.696 3.304 18 O -0.554 6.554 19 N -0.689 5.689 20 C 0.227 3.773 21 C -0.171 4.171 22 C -0.051 4.051 23 C -0.177 4.177 24 C 0.563 3.437 25 N -0.856 5.856 26 O -0.522 6.522 27 C 0.043 3.957 28 Cl -0.031 7.031 29 C -0.144 4.144 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.141 0.859 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.263 0.737 41 H 0.405 0.595 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.398 0.602 45 H 0.403 0.597 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.484 21.245 -4.385 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 H 0.082 0.918 4 C -0.174 4.174 5 C -0.219 4.219 6 C -0.220 4.220 7 N -0.329 5.329 8 C 0.140 3.860 9 C -0.559 4.559 10 H 0.079 0.921 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.211 1.211 17 C 0.398 3.602 18 O -0.429 6.429 19 N -0.337 5.337 20 C 0.127 3.873 21 C -0.193 4.193 22 C -0.070 4.070 23 C -0.182 4.182 24 C 0.349 3.651 25 N -0.421 5.421 26 O -0.398 6.398 27 C 0.014 3.986 28 Cl -0.002 7.002 29 C -0.165 4.165 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.159 0.841 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.243 0.757 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.227 0.773 45 H 0.234 0.766 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.769 19.984 -2.892 20.541 hybrid contribution 0.664 -0.140 -1.163 1.346 sum 4.432 19.844 -4.055 20.734 Atomic orbital electron populations 1.22141 0.94643 1.03892 1.01250 1.20445 0.94312 0.93534 0.84841 0.91828 1.23066 1.01789 1.02822 0.89743 1.22894 0.97748 1.02965 0.98247 1.22930 0.92577 1.01373 1.05149 1.47683 1.47411 1.16577 1.21243 1.19280 0.95377 0.73212 0.98100 1.21458 1.10532 0.90677 1.33266 0.92080 1.24908 0.95498 0.98196 0.95370 1.69923 1.28614 1.13732 1.40949 0.86514 0.81217 0.81030 0.79107 1.19827 1.20867 1.21067 1.15955 0.80665 0.80051 0.83479 1.90838 1.52808 1.65131 1.34142 1.43042 1.37446 1.09774 1.43442 1.17653 0.88373 0.91828 0.89448 1.20770 0.98830 0.98554 1.01110 1.20836 0.95738 0.98341 0.92104 1.19529 1.02092 0.99423 0.97171 1.18070 0.81361 0.80027 0.85662 1.43746 1.42290 1.32354 1.23703 1.90915 1.65256 1.63138 1.20523 1.20863 0.95434 0.93389 0.88881 1.98410 1.92147 1.85395 1.24217 1.21837 0.99018 1.02991 0.92667 0.90599 0.92660 0.91950 0.84089 0.89028 0.89337 0.89185 0.89711 0.93949 0.94211 0.92759 0.75660 0.84791 0.84877 0.77322 0.76635 0.80461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.94 37.15 0.33 -1.76 16 2 C 0.17 2.51 2.83 -67.93 -0.19 2.31 16 3 H 0.06 0.73 5.34 -51.93 -0.28 0.45 16 4 C -0.16 -2.36 5.04 -90.58 -0.46 -2.82 16 5 C -0.18 -2.14 9.73 -26.73 -0.26 -2.40 16 6 C -0.18 -2.35 10.18 -26.69 -0.27 -2.62 16 7 N -0.60 -11.34 2.39 -173.17 -0.41 -11.75 16 8 C 0.26 6.20 4.73 -5.20 -0.02 6.18 16 9 C -0.52 -13.74 7.52 -34.44 -0.26 -14.00 16 10 H 0.06 1.64 7.34 -52.48 -0.39 1.26 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 13 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.70 13.46 8.13 -86.92 -0.71 12.75 16 18 O -0.55 -13.06 12.92 5.30 0.07 -12.99 16 19 N -0.69 -9.78 5.16 -14.23 -0.07 -9.85 16 20 C 0.23 3.15 6.44 -83.74 -0.54 2.62 16 21 C -0.17 -1.73 9.92 -39.46 -0.39 -2.12 16 22 C -0.05 -0.47 9.53 -39.23 -0.37 -0.84 16 23 C -0.18 -2.24 5.88 -104.92 -0.62 -2.85 16 24 C 0.56 6.95 8.03 -12.48 -0.10 6.85 16 25 N -0.86 -6.18 8.82 30.45 0.27 -5.91 16 26 O -0.52 -8.42 14.79 5.29 0.08 -8.34 16 27 C 0.04 0.67 6.35 -39.11 -0.25 0.42 16 28 Cl -0.03 -0.52 26.01 -51.86 -1.35 -1.87 16 29 C -0.14 -2.35 8.58 -39.42 -0.34 -2.69 16 30 H 0.08 1.16 6.56 -51.93 -0.34 0.82 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.65 7.29 -51.93 -0.38 0.27 16 33 H 0.14 2.73 5.72 -51.93 -0.30 2.43 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.87 7.61 -51.93 -0.39 0.48 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 38 H 0.04 1.17 7.55 -51.93 -0.39 0.78 16 39 H 0.04 0.96 6.25 -51.92 -0.32 0.63 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.41 4.33 6.37 -40.82 -0.26 4.07 16 42 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.13 0.66 6.39 -52.49 -0.34 0.32 16 44 H 0.40 1.62 6.85 -40.82 -0.28 1.34 16 45 H 0.40 2.36 8.93 -40.82 -0.36 2.00 16 46 H 0.18 3.43 5.49 -52.49 -0.29 3.14 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -33.95 388.03 -9.96 -43.91 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.56 Total: 8.69 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -4.54 Total: 0.65 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.52 Total: -52.23 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.15 Total: -21.33 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.35 Total: -1.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.95 -9.96 -43.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072305973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.888 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.55 seconds