Wall clock time and date at job start Tue Mar 31 2020 06:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47879 * 2 1 4 4 C 1.53006 * 109.47239 * 239.99948 * 2 1 3 5 5 C 1.53000 * 117.49478 * 60.00117 * 4 2 1 6 6 C 1.52998 * 60.03237 * 107.47798 * 5 4 2 7 7 N 1.46502 * 109.47059 * 120.00138 * 2 1 3 8 8 C 1.46497 * 120.00144 * 56.50695 * 7 2 1 9 9 C 1.50697 * 109.47416 * 89.99463 * 8 7 2 10 10 H 1.08004 * 120.00161 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99986 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00379 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47541 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47222 * 120.00211 * 13 11 9 16 16 H 1.48510 * 109.46867 * 239.99817 * 13 11 9 17 17 C 1.34776 * 119.99916 * 236.50064 * 7 2 1 18 18 O 1.21577 * 119.99931 * 188.11062 * 17 7 2 19 19 N 1.34775 * 120.00146 * 8.11268 * 17 7 2 20 20 C 1.39431 * 119.99967 * 189.17172 * 19 17 7 21 21 C 1.39203 * 119.91336 * 152.45609 * 20 19 17 22 22 C 1.37602 * 120.11452 * 179.97438 * 21 20 19 23 23 C 1.39809 * 119.93637 * 0.02562 * 22 21 20 24 24 C 1.47505 * 120.08568 * 179.97438 * 23 22 21 25 25 N 1.34774 * 120.00050 * 0.02562 * 24 23 22 26 26 O 1.21591 * 119.99995 * 179.97438 * 24 23 22 27 27 C 1.39879 * 119.82734 * 0.02562 * 23 22 21 28 28 Cl 1.73595 * 120.05387 * 180.02562 * 27 23 22 29 29 C 1.37853 * 119.89050 * 359.71699 * 27 23 22 30 30 H 1.08994 * 109.47523 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46992 * 299.99962 * 1 2 3 32 32 H 1.09004 * 109.47299 * 59.99319 * 1 2 3 33 33 H 1.09002 * 115.55962 * 274.31790 * 4 2 1 34 34 H 1.09003 * 117.49760 * 214.98285 * 5 4 2 35 35 H 1.08998 * 117.49889 * 359.97438 * 5 4 2 36 36 H 1.08998 * 117.49548 * 107.49526 * 6 5 4 37 37 H 1.09003 * 117.49880 * 252.51839 * 6 5 4 38 38 H 1.08999 * 109.47228 * 210.00175 * 8 7 2 39 39 H 1.09010 * 109.46973 * 329.99966 * 8 7 2 40 40 H 0.97001 * 120.00437 * 180.02562 * 12 11 9 41 41 H 0.97001 * 119.99871 * 9.18265 * 19 17 7 42 42 H 1.08004 * 119.93830 * 0.02782 * 21 20 19 43 43 H 1.07996 * 120.03338 * 179.97438 * 22 21 20 44 44 H 0.96998 * 119.99744 * 359.97438 * 25 24 23 45 45 H 0.96997 * 120.00459 * 179.97438 * 25 24 23 46 46 H 1.07994 * 119.97265 * 180.27253 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6357 -0.1495 -2.6096 6 6 3.0742 0.0058 -2.1123 7 7 2.0183 -0.6907 1.1962 8 6 1.6024 -2.0689 1.4673 9 6 2.5768 -3.0231 0.8262 10 1 3.4217 -2.6411 0.2724 11 6 2.3896 -4.3838 0.9465 12 7 1.3606 -4.8491 1.6203 13 14 3.5979 -5.5665 0.1523 14 1 4.6599 -4.7963 -0.5434 15 1 4.2117 -6.4236 1.1981 16 1 2.8821 -6.4201 -0.8299 17 6 2.8503 -0.0580 2.0471 18 8 3.3720 -0.6730 2.9569 19 7 3.1038 1.2562 1.8895 20 6 4.1043 1.8685 2.6434 21 6 4.7644 2.9871 2.1427 22 6 5.7520 3.5950 2.8834 23 6 6.0933 3.0877 4.1408 24 6 7.1518 3.7364 4.9373 25 7 7.7910 4.8198 4.4535 26 8 7.4470 3.2942 6.0308 27 6 5.4290 1.9629 4.6409 28 17 5.8476 1.3286 6.2016 29 6 4.4371 1.3628 3.8951 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 2.1270 -1.8045 -1.1643 34 1 1.4567 -0.8565 -3.4197 35 1 1.0061 0.7402 -2.6145 36 1 3.8417 -0.5991 -2.5952 37 1 3.3909 0.9977 -1.7897 38 1 1.5836 -2.2376 2.5440 39 1 0.6067 -2.2356 1.0560 40 1 1.2291 -5.8064 1.7053 41 1 2.5902 1.7762 1.2517 42 1 4.5003 3.3791 1.1716 43 1 6.2636 4.4625 2.4936 44 1 7.5552 5.1727 3.5813 45 1 8.4869 5.2466 4.9774 46 1 3.9204 0.4969 4.2819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072305973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:28 Heat of formation + Delta-G solvation = -20.087310 kcal Electronic energy + Delta-G solvation = -30828.519356 eV Core-core repulsion = 26551.850830 eV Total energy + Delta-G solvation = -4276.668526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.02072 -40.88013 -39.48335 -38.59718 -37.45469 -36.24752 -35.86413 -34.77001 -34.46945 -31.81068 -31.31372 -31.02854 -28.96885 -25.69764 -25.31462 -24.07905 -24.01635 -23.02522 -21.88991 -21.72692 -20.30582 -19.73241 -19.11537 -18.62309 -18.42153 -17.72443 -16.84605 -16.56096 -16.27966 -16.17402 -16.08312 -15.83641 -15.61497 -15.35190 -15.09579 -14.93715 -14.59707 -14.32169 -14.12246 -13.98014 -13.77452 -13.27644 -13.26508 -13.07591 -12.88014 -12.70241 -12.61098 -12.56176 -12.27502 -12.17101 -12.16117 -11.93638 -11.50756 -11.42612 -11.14758 -10.95362 -10.70836 -10.60756 -10.60309 -10.57332 -9.87225 -9.59431 -9.10228 -8.18960 -6.28645 -0.33915 0.19877 1.15004 1.33147 1.37007 1.46126 1.58925 1.74201 2.18911 2.38547 2.57555 2.74101 2.80934 3.11065 3.16379 3.71912 3.74169 3.92529 4.06751 4.08914 4.14709 4.16466 4.26706 4.31715 4.54092 4.57178 4.67656 4.82455 4.89849 4.97020 5.02408 5.03349 5.07605 5.14131 5.19876 5.23868 5.27978 5.37776 5.43216 5.59899 5.64173 5.78672 5.83986 5.96060 6.04153 6.11984 6.50221 6.78624 7.00996 7.34751 7.38946 7.57051 8.87975 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.002963 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.422507 B = 9447.145514 C =10898.328713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.106 0.894 4 C -0.191 4.191 5 C -0.153 4.153 6 C -0.177 4.177 7 N -0.599 5.599 8 C 0.280 3.720 9 C -0.518 4.518 10 H 0.052 0.948 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.954 3.046 14 H -0.270 1.270 15 H -0.287 1.287 16 H -0.271 1.271 17 C 0.691 3.309 18 O -0.609 6.609 19 N -0.666 5.666 20 C 0.206 3.794 21 C -0.144 4.144 22 C -0.029 4.029 23 C -0.179 4.179 24 C 0.557 3.443 25 N -0.826 5.826 26 O -0.569 6.569 27 C 0.019 3.981 28 Cl -0.060 7.060 29 C -0.171 4.171 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.113 0.887 38 H -0.006 1.006 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.425 0.575 42 H 0.185 0.815 43 H 0.192 0.808 44 H 0.417 0.583 45 H 0.413 0.587 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 25.975 -8.268 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.069 3.931 3 H 0.123 0.877 4 C -0.210 4.210 5 C -0.190 4.190 6 C -0.214 4.214 7 N -0.332 5.332 8 C 0.159 3.841 9 C -0.557 4.557 10 H 0.070 0.930 11 C -0.189 4.189 12 N -0.568 5.568 13 Si 0.779 3.221 14 H -0.194 1.194 15 H -0.213 1.213 16 H -0.196 1.196 17 C 0.393 3.607 18 O -0.488 6.488 19 N -0.316 5.316 20 C 0.108 3.892 21 C -0.165 4.165 22 C -0.048 4.048 23 C -0.185 4.185 24 C 0.343 3.657 25 N -0.392 5.392 26 O -0.449 6.449 27 C -0.009 4.009 28 Cl -0.031 7.031 29 C -0.193 4.193 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.012 0.988 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.267 0.733 42 H 0.203 0.797 43 H 0.209 0.791 44 H 0.250 0.750 45 H 0.246 0.754 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.831 24.825 -6.860 26.205 hybrid contribution 0.370 -1.478 0.003 1.524 sum 5.201 23.347 -6.857 24.883 Atomic orbital electron populations 1.22123 0.93601 1.02358 1.03353 1.20794 0.95170 0.94740 0.82397 0.87658 1.22793 1.05756 1.00440 0.91993 1.22996 0.97406 1.03329 0.95256 1.23046 0.92710 1.01940 1.03660 1.47506 1.47572 1.15112 1.23013 1.18627 0.94783 0.76093 0.94595 1.21655 1.10280 0.91346 1.32417 0.92972 1.25693 0.97146 0.99971 0.96111 1.70031 1.30283 1.14031 1.42483 0.85572 0.79242 0.78968 0.78269 1.19443 1.21341 1.19601 1.16180 0.80141 0.81633 0.82730 1.90837 1.54794 1.66962 1.36192 1.42564 1.37762 1.07664 1.43620 1.17908 0.89209 0.93400 0.88724 1.21273 0.96873 0.95762 1.02545 1.21467 0.94618 0.98868 0.89804 1.19808 1.01726 0.98330 0.98597 1.18138 0.81506 0.80919 0.85110 1.43467 1.41120 1.30261 1.24365 1.90906 1.66659 1.64786 1.22556 1.20993 0.96642 0.95111 0.88193 1.98387 1.92401 1.86071 1.26238 1.21518 1.00189 1.02839 0.94712 0.93952 0.92047 0.88237 0.89181 0.89146 0.86048 0.90329 0.86865 0.98834 0.94729 0.92693 0.73256 0.79741 0.79062 0.74980 0.75436 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 8.94 71.98 0.64 -3.16 16 2 C 0.17 4.68 2.83 44.99 0.13 4.81 16 3 H 0.11 1.95 5.34 -2.39 -0.01 1.93 16 4 C -0.19 -5.56 5.04 -10.77 -0.05 -5.61 16 5 C -0.15 -3.05 9.73 30.59 0.30 -2.75 16 6 C -0.18 -3.95 10.18 30.62 0.31 -3.63 16 7 N -0.60 -23.55 2.39 -820.06 -1.96 -25.50 16 8 C 0.28 14.41 4.73 85.63 0.40 14.81 16 9 C -0.52 -28.91 7.52 25.60 0.19 -28.72 16 10 H 0.05 2.94 7.34 -2.91 -0.02 2.92 16 11 C 0.01 0.53 5.46 84.66 0.46 1.00 16 12 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 13 Si 0.95 45.40 29.54 68.60 2.03 47.42 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 C 0.69 27.58 8.13 179.06 1.46 29.04 16 18 O -0.61 -31.06 12.92 -3.96 -0.05 -31.11 16 19 N -0.67 -17.80 5.16 -317.19 -1.64 -19.44 16 20 C 0.21 5.37 6.44 38.36 0.25 5.62 16 21 C -0.14 -2.10 9.92 22.35 0.22 -1.88 16 22 C -0.03 -0.37 9.53 22.50 0.21 -0.15 16 23 C -0.18 -4.14 5.88 -20.06 -0.12 -4.26 16 24 C 0.56 12.64 8.03 86.69 0.70 13.33 16 25 N -0.83 -8.56 8.82 -175.84 -1.55 -10.11 16 26 O -0.57 -18.37 14.79 -4.00 -0.06 -18.43 16 27 C 0.02 0.61 6.35 22.58 0.14 0.75 16 28 Cl -0.06 -2.16 26.01 -2.72 -0.07 -2.23 16 29 C -0.17 -5.85 8.58 22.37 0.19 -5.66 16 30 H 0.04 1.31 6.56 -2.39 -0.02 1.30 16 31 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.10 1.67 7.29 -2.38 -0.02 1.65 16 33 H 0.09 3.62 5.72 -2.39 -0.01 3.60 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.12 1.66 7.61 -2.39 -0.02 1.64 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.11 1.87 8.05 -2.39 -0.02 1.86 16 38 H -0.01 -0.39 7.55 -2.39 -0.02 -0.41 16 39 H 0.03 1.80 6.25 -2.38 -0.01 1.79 16 40 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.43 7.38 6.37 -92.71 -0.59 6.79 16 42 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 43 H 0.19 0.25 6.39 -2.91 -0.02 0.23 16 44 H 0.42 0.89 6.85 -92.71 -0.63 0.26 16 45 H 0.41 3.36 8.93 -92.71 -0.83 2.53 16 46 H 0.14 5.83 5.49 -2.91 -0.02 5.81 16 Total: -1.00 -86.95 388.03 1.45 -85.50 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.97 Total: 15.71 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 5.44 Total: 13.53 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -4.86 Total: -110.39 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.11 Total: -49.54 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.07 Total: -2.23 kcal Total: -86.95 1.45 -85.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072305973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.409 kcal (2) G-P(sol) polarization free energy of solvation -86.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds