Wall clock time and date at job start Tue Mar 31 2020 07:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48499 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47057 * 299.99947 * 3 2 1 6 6 H 1.48496 * 109.47143 * 60.00234 * 3 2 1 7 7 C 1.39948 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.39921 * 119.99902 * 0.02562 * 7 2 1 10 10 O 1.22027 * 120.00176 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99998 * 179.97438 * 9 7 2 12 12 C 1.37271 * 119.99837 * 179.97438 * 11 9 7 13 13 N 1.30382 * 125.14408 * 179.97438 * 12 11 9 14 14 C 1.31806 * 116.05714 * 179.97438 * 13 12 11 15 15 C 1.47644 * 122.65961 * 180.02562 * 14 13 12 16 16 C 1.39972 * 120.08775 * 179.69989 * 15 14 13 17 17 C 1.37608 * 119.90062 * 179.76480 * 16 15 14 18 18 C 1.39197 * 120.09488 * 0.53007 * 17 16 15 19 19 O 1.35673 * 119.91060 * 179.72376 * 18 17 16 20 20 C 1.35853 * 118.00314 * 67.42305 * 19 18 17 21 21 C 1.38792 * 120.05804 * 5.85514 * 20 19 18 22 22 C 1.38127 * 119.93685 * 179.73981 * 21 20 19 23 23 C 1.38281 * 120.06001 * 0.53410 * 22 21 20 24 24 C 1.38281 * 120.12340 * 359.71536 * 23 22 21 25 25 C 1.38124 * 120.06065 * 0.02961 * 24 23 22 26 26 C 1.39200 * 120.18261 * 359.70035 * 18 17 16 27 27 C 1.37604 * 120.09228 * 0.04297 * 26 18 17 28 28 C 1.37946 * 114.67844 * 0.02562 * 14 13 12 29 29 S 1.71010 * 108.87941 * 0.02562 * 28 14 13 30 30 H 0.97003 * 120.00273 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99868 * 359.97438 * 11 9 7 32 32 H 1.07996 * 120.05497 * 0.02562 * 16 15 14 33 33 H 1.08000 * 119.95338 * 180.22983 * 17 16 15 34 34 H 1.08005 * 120.03496 * 359.97438 * 21 20 19 35 35 H 1.08007 * 119.96928 * 180.24842 * 22 21 20 36 36 H 1.07999 * 119.93855 * 179.70005 * 23 22 21 37 37 H 1.08005 * 119.97221 * 179.97438 * 24 23 22 38 38 H 1.08000 * 120.03124 * 179.97438 * 25 24 23 39 39 H 1.08004 * 119.95409 * 180.02562 * 26 18 17 40 40 H 1.08004 * 120.04227 * 180.02562 * 27 26 18 41 41 H 1.08003 * 125.56366 * 180.26729 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0071 -1.2120 0.0005 8 1 3.0871 -1.2120 0.0010 9 6 1.3075 -2.4237 0.0005 10 8 0.0872 -2.4237 0.0005 11 7 1.9814 -3.5909 0.0005 12 6 1.2950 -4.7797 0.0011 13 7 1.8430 -5.9628 0.0006 14 6 1.0119 -6.9858 0.0018 15 6 1.4743 -8.3880 0.0021 16 6 0.5439 -9.4337 0.0097 17 6 0.9790 -10.7391 0.0050 18 6 2.3423 -11.0204 0.0039 19 8 2.7672 -12.3089 0.0050 20 6 2.5285 -13.0602 -1.1014 21 6 1.9781 -12.4753 -2.2334 22 6 1.7414 -13.2404 -3.3588 23 6 2.0420 -14.5901 -3.3546 24 6 2.5856 -15.1765 -2.2264 25 6 2.8293 -14.4151 -1.1000 26 6 3.2709 -9.9834 0.0012 27 6 2.8441 -8.6752 0.0005 28 6 -0.3242 -6.6425 0.0028 29 16 -0.4574 -4.9376 0.0014 30 1 -0.4851 0.8400 0.0004 31 1 2.9514 -3.5909 0.0002 32 1 -0.5140 -9.2164 0.0150 33 1 0.2619 -11.5466 0.0071 34 1 1.7387 -11.4221 -2.2357 35 1 1.3169 -12.7849 -4.2414 36 1 1.8516 -15.1875 -4.2339 37 1 2.8190 -16.2311 -2.2256 38 1 3.2534 -14.8737 -0.2190 39 1 4.3277 -10.2058 -0.0001 40 1 3.5653 -7.8712 -0.0020 41 1 -1.1512 -7.3371 0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072333506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:13 Heat of formation + Delta-G solvation = 15.126501 kcal Electronic energy + Delta-G solvation = -27513.033873 eV Core-core repulsion = 23449.526297 eV Total energy + Delta-G solvation = -4063.507577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.082 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97525 -40.91870 -40.03839 -39.21591 -38.07122 -35.58245 -34.59623 -32.52314 -32.24572 -31.65402 -30.90859 -29.60935 -28.78960 -26.04633 -24.52478 -23.82325 -23.31285 -22.92363 -22.23425 -21.22888 -19.71479 -19.38958 -18.76603 -17.89360 -17.62446 -17.55719 -16.85980 -16.75422 -16.60380 -16.18169 -16.01935 -15.63004 -15.32522 -14.93757 -14.71171 -14.69022 -14.55504 -14.47729 -14.35333 -13.86392 -13.56861 -13.35471 -13.26016 -12.97388 -12.83878 -12.83445 -12.53798 -12.19444 -11.96831 -11.96248 -11.83029 -11.63255 -11.02812 -10.69442 -10.38499 -10.12418 -10.06749 -9.96476 -9.77877 -9.22992 -8.52005 -8.51263 -7.17444 -0.48332 0.19948 0.28804 0.38312 0.38542 0.44776 1.28327 1.36717 1.41863 1.59498 1.72473 2.12552 2.18343 2.35246 2.43100 2.80311 2.86207 3.48203 3.52580 3.77718 3.84293 3.89376 3.98277 4.15802 4.25299 4.27390 4.33092 4.43266 4.48881 4.54779 4.59624 4.80574 4.91897 4.98650 5.06941 5.13060 5.22753 5.30362 5.35330 5.45246 5.47241 5.58381 5.61861 5.70772 5.78017 5.87767 5.94667 6.54915 6.60081 6.73122 7.15851 8.09038 8.38664 Molecular weight = 366.08amu Principal moments of inertia in cm(-1) A = 0.026548 B = 0.001638 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.422763 B =17092.331461 C =17359.150330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.036 3.964 3 Si 1.003 2.997 4 H -0.247 1.247 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.097 0.903 9 C 0.516 3.484 10 O -0.587 6.587 11 N -0.633 5.633 12 C 0.269 3.731 13 N -0.534 5.534 14 C 0.103 3.897 15 C -0.022 4.022 16 C -0.085 4.085 17 C -0.132 4.132 18 C 0.078 3.922 19 O -0.267 6.267 20 C 0.099 3.901 21 C -0.207 4.207 22 C -0.091 4.091 23 C -0.154 4.154 24 C -0.083 4.083 25 C -0.157 4.157 26 C -0.123 4.123 27 C -0.082 4.082 28 C -0.363 4.363 29 S 0.235 5.765 30 H 0.285 0.715 31 H 0.416 0.584 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.121 0.879 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -23.820 -3.947 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.185 4.185 3 Si 0.822 3.178 4 H -0.170 1.170 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.115 0.885 9 C 0.328 3.672 10 O -0.475 6.475 11 N -0.281 5.281 12 C -0.099 4.099 13 N -0.259 5.259 14 C -0.032 4.032 15 C -0.025 4.025 16 C -0.104 4.104 17 C -0.150 4.150 18 C 0.035 3.965 19 O -0.180 6.180 20 C 0.057 3.943 21 C -0.226 4.226 22 C -0.109 4.109 23 C -0.172 4.172 24 C -0.101 4.101 25 C -0.176 4.176 26 C -0.141 4.141 27 C -0.101 4.101 28 C -0.506 4.506 29 S 0.487 5.513 30 H 0.096 0.904 31 H 0.254 0.746 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.589 -22.925 -3.779 23.378 hybrid contribution 0.989 0.244 0.106 1.024 sum 3.578 -22.681 -3.673 23.254 Atomic orbital electron populations 1.70155 1.09506 1.30159 1.31062 1.26961 0.95565 1.05005 0.90954 0.84861 0.79368 0.74723 0.78843 1.16969 1.19039 1.19064 1.20126 0.96181 0.90032 1.51282 0.88510 1.17177 0.87667 0.82883 0.79478 1.90622 1.14421 1.84547 1.57945 1.43101 1.10724 1.01680 1.72604 1.24561 0.95325 0.89516 1.00467 1.66641 1.36819 0.96332 1.26100 1.19008 0.88093 0.92267 1.03864 1.18440 0.93881 0.89015 1.01117 1.21233 1.00309 0.90514 0.98325 1.21413 0.94638 0.97401 1.01571 1.18978 0.92526 0.82294 1.02719 1.84276 1.76033 1.20868 1.36794 1.19491 0.97763 0.91641 0.85454 1.21457 1.05720 1.01028 0.94372 1.21278 0.97647 0.94536 0.97425 1.21490 1.01028 0.94936 0.99772 1.21354 0.96283 1.00948 0.91466 1.20741 1.05377 0.90116 1.01322 1.21180 1.00564 0.90913 1.01431 1.21227 0.95068 0.96201 0.97646 1.27739 1.01015 1.04097 1.17701 1.85215 1.03180 0.95650 1.67205 0.90412 0.74608 0.83107 0.83498 0.86101 0.84204 0.83266 0.82363 0.84118 0.83659 0.84911 0.78520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -42.43 11.69 21.82 0.26 -42.17 16 2 C 0.04 1.79 5.49 85.27 0.47 2.26 16 3 Si 1.00 36.31 29.56 68.60 2.03 38.34 16 4 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 5 H -0.27 -9.29 7.11 99.48 0.71 -8.59 16 6 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.54 -27.56 9.21 23.09 0.21 -27.35 16 8 H 0.10 4.37 7.84 -2.91 -0.02 4.35 16 9 C 0.52 27.42 7.46 84.65 0.63 28.06 16 10 O -0.59 -34.58 12.26 -5.40 -0.07 -34.64 16 11 N -0.63 -28.76 5.32 -319.94 -1.70 -30.46 16 12 C 0.27 11.86 8.31 179.57 1.49 13.35 16 13 N -0.53 -21.56 9.98 -186.44 -1.86 -23.42 16 14 C 0.10 3.66 6.68 41.56 0.28 3.94 16 15 C -0.02 -0.65 5.89 -19.96 -0.12 -0.77 16 16 C -0.08 -2.01 9.49 22.54 0.21 -1.79 16 17 C -0.13 -2.89 8.32 22.35 0.19 -2.70 16 18 C 0.08 1.86 4.75 22.73 0.11 1.96 16 19 O -0.27 -6.37 9.98 -32.83 -0.33 -6.70 16 20 C 0.10 2.09 6.54 22.54 0.15 2.23 16 21 C -0.21 -4.17 8.79 22.38 0.20 -3.97 16 22 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 23 C -0.15 -1.96 10.04 22.29 0.22 -1.73 16 24 C -0.08 -1.04 10.04 22.25 0.22 -0.81 16 25 C -0.16 -2.63 9.99 22.38 0.22 -2.41 16 26 C -0.12 -3.00 9.97 22.35 0.22 -2.78 16 27 C -0.08 -2.31 9.63 22.54 0.22 -2.10 16 28 C -0.36 -12.21 10.45 67.75 0.71 -11.50 16 29 S 0.23 9.73 20.20 -56.49 -1.14 8.59 16 30 H 0.29 13.83 8.29 -92.71 -0.77 13.06 16 31 H 0.42 16.53 8.77 -92.71 -0.81 15.72 16 32 H 0.15 2.92 6.63 -2.91 -0.02 2.90 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.12 2.62 6.18 -2.91 -0.02 2.60 16 35 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 40 H 0.13 3.89 7.68 -2.91 -0.02 3.87 16 41 H 0.20 5.05 6.87 -2.91 -0.02 5.03 16 Total: -1.00 -67.09 372.01 3.34 -63.75 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.30 Total: 34.05 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 5.86 Total: -7.34 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -3.31 Total: -96.05 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.39 Total: -41.34 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Atomic # 16 Polarization: 9.73 SS G_CDS: -1.14 Total: 8.59 kcal Total: -67.09 3.34 -63.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072333506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.881 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds