Wall clock time and date at job start Tue Mar 31 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99694 * 2 1 4 4 H 1.48503 * 109.47273 * 270.00001 * 3 2 1 5 5 H 1.48493 * 109.47244 * 30.00572 * 3 2 1 6 6 H 1.48503 * 109.46810 * 150.00503 * 3 2 1 7 7 C 1.37876 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00123 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46519 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47060 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.47169 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54365 * 68.37801 * 12 11 10 14 14 O 1.42100 * 110.54341 * 291.61997 * 12 11 10 15 15 N 1.65605 * 104.44844 * 180.02562 * 12 11 10 16 16 C 1.47262 * 121.12699 * 262.15226 * 15 12 11 17 17 C 1.53505 * 107.23706 * 221.04674 * 16 15 12 18 18 N 1.46557 * 109.16647 * 298.38790 * 17 16 15 19 19 C 1.46896 * 111.00098 * 178.93975 * 18 17 16 20 20 C 1.53007 * 109.46747 * 290.28303 * 19 18 17 21 21 C 1.53000 * 117.49853 * 242.45040 * 20 19 18 22 22 C 1.52997 * 60.00017 * 252.51373 * 21 20 19 23 23 C 1.39733 * 113.01386 * 53.47830 * 18 17 16 24 24 C 1.39091 * 118.86372 * 156.97588 * 23 18 17 25 25 C 1.38124 * 120.21592 * 179.77693 * 24 23 18 26 26 C 1.38251 * 120.30310 * 359.93232 * 25 24 23 27 27 C 1.38277 * 119.97583 * 0.13202 * 26 25 24 28 28 C 1.38651 * 120.00372 * 0.02562 * 27 26 25 29 29 H 0.97002 * 120.00035 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46786 * 60.00767 * 9 7 2 31 31 H 1.08999 * 109.47178 * 300.00072 * 9 7 2 32 32 H 1.08998 * 109.47542 * 60.00163 * 10 9 7 33 33 H 1.09002 * 109.47740 * 300.00094 * 10 9 7 34 34 H 1.08998 * 109.46943 * 59.99633 * 11 10 9 35 35 H 1.09002 * 109.46789 * 300.00515 * 11 10 9 36 36 H 1.08998 * 109.83176 * 101.65441 * 16 15 12 37 37 H 1.08996 * 109.97218 * 340.51654 * 16 15 12 38 38 H 1.09000 * 109.52959 * 178.46396 * 17 16 15 39 39 H 1.09004 * 109.52952 * 58.31661 * 17 16 15 40 40 H 1.08997 * 109.47369 * 50.28312 * 19 18 17 41 41 H 1.08995 * 109.47168 * 170.28558 * 19 18 17 42 42 H 1.08993 * 115.55088 * 28.16294 * 20 19 18 43 43 H 1.09002 * 117.49580 * 0.02562 * 21 20 19 44 44 H 1.08998 * 117.49714 * 145.01912 * 21 20 19 45 45 H 1.08999 * 117.49748 * 252.50690 * 22 21 20 46 46 H 1.09005 * 117.49876 * 107.49385 * 22 21 20 47 47 H 1.08000 * 119.89047 * 359.76029 * 24 23 18 48 48 H 1.08002 * 119.84841 * 179.97438 * 25 24 23 49 49 H 1.07995 * 120.01560 * 180.10553 * 26 25 24 50 50 H 1.07994 * 119.99780 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 16 2.6592 -6.3658 -0.0004 13 8 3.3551 -6.4262 1.2371 14 8 3.3568 -6.4261 -1.2369 15 7 1.7089 -7.7220 -0.0019 16 6 1.4117 -8.4446 1.2463 17 6 1.4946 -9.9453 0.9339 18 7 0.4868 -10.2831 -0.0751 19 6 0.5477 -11.7089 -0.4232 20 6 1.8346 -11.9891 -1.2021 21 6 1.6946 -12.4966 -2.6386 22 6 2.1567 -13.4478 -1.5329 23 6 0.5695 -9.4844 -1.2186 24 6 0.0448 -9.9660 -2.4134 25 6 0.1073 -9.1980 -3.5597 26 6 0.6902 -7.9447 -3.5287 27 6 1.2162 -7.4564 -2.3468 28 6 1.1595 -8.2238 -1.1934 29 1 -0.4850 0.8401 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8720 -3.6043 0.8894 33 1 2.8721 -3.6043 -0.8905 34 1 0.8540 -5.0445 -0.8914 35 1 0.8534 -5.0450 0.8886 36 1 0.4086 -8.1921 1.5899 37 1 2.1435 -8.1838 2.0108 38 1 1.3068 -10.5175 1.8424 39 1 2.4872 -10.1836 0.5517 40 1 0.5374 -12.3063 0.4884 41 1 -0.3134 -11.9699 -1.0383 42 1 2.6714 -11.3266 -0.9813 43 1 0.6857 -12.6305 -3.0290 44 1 2.4393 -12.1677 -3.3634 45 1 3.2054 -13.7447 -1.5303 46 1 1.4518 -14.2078 -1.1958 47 1 -0.4127 -10.9438 -2.4449 48 1 -0.3016 -9.5779 -4.4843 49 1 0.7350 -7.3474 -4.4274 50 1 1.6712 -6.4773 -2.3222 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074977041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:35 Heat of formation + Delta-G solvation = -3.853878 kcal Electronic energy + Delta-G solvation = -31516.438230 eV Core-core repulsion = 27443.776350 eV Total energy + Delta-G solvation = -4072.661880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.10597 -38.16207 -37.32881 -36.65691 -35.97478 -35.28487 -34.73398 -32.23054 -30.83636 -30.22067 -28.67259 -27.85062 -25.44653 -24.10434 -23.84728 -23.03115 -22.50067 -21.44578 -20.53920 -20.00414 -19.11058 -18.03490 -17.56353 -16.81138 -16.65624 -16.34884 -15.83303 -15.73181 -15.35781 -15.08548 -14.55177 -14.52129 -14.32153 -14.24770 -14.00886 -13.73993 -13.26307 -13.09632 -12.88542 -12.63074 -12.33658 -12.31164 -12.24039 -12.04908 -11.93098 -11.86744 -11.85201 -11.83309 -11.55432 -11.31368 -10.98803 -10.93057 -10.87158 -10.66764 -10.65204 -10.40291 -10.33833 -9.99607 -9.95471 -9.43577 -9.16549 -8.43589 -8.42337 -7.62719 -6.07049 -4.10494 0.19241 1.30954 1.35830 2.43396 3.23641 3.29582 3.35770 3.39589 3.45671 3.70675 3.91213 4.08573 4.18236 4.28306 4.41058 4.46889 4.56401 4.63019 4.72326 4.82517 4.86071 4.99614 5.02312 5.05394 5.12250 5.15457 5.24581 5.28064 5.29035 5.29900 5.32870 5.47238 5.51824 5.54623 5.59550 5.74848 5.75473 5.81681 5.83949 6.03102 6.13354 6.20089 6.38043 6.42067 6.56034 6.63037 6.76781 6.81692 7.12912 7.54646 7.63810 7.90480 8.30202 8.95562 9.54305 11.04069 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002347 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.884636 B =11928.664920 C =12490.189676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.604 4.604 12 S 2.589 3.411 13 O -0.952 6.952 14 O -0.945 6.945 15 N -0.946 5.946 16 C 0.105 3.895 17 C 0.044 3.956 18 N -0.485 5.485 19 C 0.088 3.912 20 C -0.190 4.190 21 C -0.167 4.167 22 C -0.176 4.176 23 C 0.090 3.910 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.107 4.107 27 C -0.146 4.146 28 C 0.146 3.854 29 H 0.262 0.738 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.126 0.874 48 H 0.122 0.878 49 H 0.128 0.872 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -28.302 -2.589 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.736 4.736 12 S 2.688 3.312 13 O -0.942 6.942 14 O -0.936 6.936 15 N -0.770 5.770 16 C -0.019 4.019 17 C -0.084 4.084 18 N -0.199 5.199 19 C -0.038 4.038 20 C -0.209 4.209 21 C -0.204 4.204 22 C -0.214 4.214 23 C -0.011 4.011 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.126 4.126 27 C -0.167 4.167 28 C 0.048 3.952 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.144 0.856 48 H 0.140 0.860 49 H 0.146 0.854 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.493 -28.135 -2.174 28.223 hybrid contribution 0.401 1.067 -0.271 1.172 sum -0.092 -27.068 -2.445 27.178 Atomic orbital electron populations 1.69960 1.06080 1.26820 1.50458 1.25023 0.94896 0.99380 0.95073 0.86551 0.79864 0.83159 0.78215 1.20535 1.21152 1.19749 1.21233 0.93236 0.90823 1.51225 0.92354 1.19066 0.93473 0.90293 0.97882 1.21540 0.99439 0.91436 1.02055 1.30582 1.16078 1.15118 1.11838 1.05918 0.75807 0.75021 0.74414 1.93558 1.70012 1.85664 1.44995 1.93593 1.70288 1.85318 1.44362 1.56202 1.65920 1.43432 1.11422 1.21982 1.03617 0.90927 0.85409 1.22393 0.93874 0.96262 0.95846 1.58589 1.47203 1.03970 1.10108 1.21924 0.95624 0.86408 0.99844 1.23001 1.00665 0.97906 0.99364 1.23022 1.02765 1.03212 0.91425 1.22940 1.02180 0.92416 1.03850 1.18276 1.00665 0.91876 0.90270 1.20865 1.02216 1.00357 0.90982 1.20876 1.00848 0.94751 0.97873 1.20864 0.98432 0.96054 0.97286 1.21166 1.02503 1.01023 0.92042 1.17206 0.98570 0.93809 0.85637 0.92856 0.95976 0.96035 0.91492 0.91455 0.85004 0.85024 0.89437 0.86841 0.88213 0.92686 0.89562 0.89520 0.87871 0.88571 0.88817 0.88918 0.88661 0.85580 0.85994 0.85420 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 10 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 11 C -0.60 -9.60 6.04 37.16 0.22 -9.37 16 12 S 2.59 40.16 4.85 -107.50 -0.52 39.64 16 13 O -0.95 -16.49 16.48 -57.54 -0.95 -17.44 16 14 O -0.95 -16.83 15.02 -57.54 -0.86 -17.69 16 15 N -0.95 -12.42 3.25 -57.61 -0.19 -12.61 16 16 C 0.11 1.10 6.70 -3.36 -0.02 1.08 16 17 C 0.04 0.40 5.42 -3.75 -0.02 0.38 16 18 N -0.49 -4.63 4.76 -170.90 -0.81 -5.44 16 19 C 0.09 0.62 5.14 -3.82 -0.02 0.61 16 20 C -0.19 -1.44 4.32 -90.62 -0.39 -1.83 16 21 C -0.17 -1.14 8.70 -26.73 -0.23 -1.38 16 22 C -0.18 -1.08 10.25 -26.73 -0.27 -1.35 16 23 C 0.09 1.04 5.15 -83.58 -0.43 0.61 16 24 C -0.12 -1.22 7.44 -39.31 -0.29 -1.52 16 25 C -0.12 -1.23 10.02 -39.62 -0.40 -1.63 16 26 C -0.11 -1.25 10.05 -39.56 -0.40 -1.64 16 27 C -0.15 -2.01 8.49 -39.41 -0.33 -2.35 16 28 C 0.15 1.95 6.26 -83.38 -0.52 1.43 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.13 1.93 7.35 -51.93 -0.38 1.55 16 35 H 0.13 1.87 8.14 -51.92 -0.42 1.45 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.11 1.13 6.82 -51.93 -0.35 0.78 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.53 6.53 -51.93 -0.34 0.19 16 40 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 41 H 0.09 0.55 6.12 -51.93 -0.32 0.23 16 42 H 0.10 1.00 6.63 -51.93 -0.34 0.65 16 43 H 0.10 0.56 7.20 -51.93 -0.37 0.19 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.13 0.99 4.83 -52.49 -0.25 0.73 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 49 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 50 H 0.14 2.01 4.77 -52.49 -0.25 1.76 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -34.29 399.10 -13.05 -47.34 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.65 Total: 1.57 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: -3.80 Total: -32.12 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.26 Total: -43.83 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.81 Total: -35.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 40.16 SS G_CDS: -0.52 Total: 39.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.29 -13.05 -47.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074977041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.490 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds