Wall clock time and date at job start Tue Mar 31 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99694 * 2 1 4 4 H 1.48503 * 109.47273 * 270.00001 * 3 2 1 5 5 H 1.48493 * 109.47244 * 30.00572 * 3 2 1 6 6 H 1.48503 * 109.46810 * 150.00503 * 3 2 1 7 7 C 1.37876 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00123 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46519 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47060 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.47169 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54365 * 68.37801 * 12 11 10 14 14 O 1.42100 * 110.54341 * 291.61997 * 12 11 10 15 15 N 1.65605 * 104.44844 * 180.02562 * 12 11 10 16 16 C 1.47262 * 121.12699 * 262.15226 * 15 12 11 17 17 C 1.53505 * 107.23706 * 221.04674 * 16 15 12 18 18 N 1.46557 * 109.16647 * 298.38790 * 17 16 15 19 19 C 1.46896 * 111.00098 * 178.93975 * 18 17 16 20 20 C 1.53007 * 109.46747 * 290.28303 * 19 18 17 21 21 C 1.53000 * 117.49853 * 242.45040 * 20 19 18 22 22 C 1.52997 * 60.00017 * 252.51373 * 21 20 19 23 23 C 1.39733 * 113.01386 * 53.47830 * 18 17 16 24 24 C 1.39091 * 118.86372 * 156.97588 * 23 18 17 25 25 C 1.38124 * 120.21592 * 179.77693 * 24 23 18 26 26 C 1.38251 * 120.30310 * 359.93232 * 25 24 23 27 27 C 1.38277 * 119.97583 * 0.13202 * 26 25 24 28 28 C 1.38651 * 120.00372 * 0.02562 * 27 26 25 29 29 H 0.97002 * 120.00035 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46786 * 60.00767 * 9 7 2 31 31 H 1.08999 * 109.47178 * 300.00072 * 9 7 2 32 32 H 1.08998 * 109.47542 * 60.00163 * 10 9 7 33 33 H 1.09002 * 109.47740 * 300.00094 * 10 9 7 34 34 H 1.08998 * 109.46943 * 59.99633 * 11 10 9 35 35 H 1.09002 * 109.46789 * 300.00515 * 11 10 9 36 36 H 1.08998 * 109.83176 * 101.65441 * 16 15 12 37 37 H 1.08996 * 109.97218 * 340.51654 * 16 15 12 38 38 H 1.09000 * 109.52959 * 178.46396 * 17 16 15 39 39 H 1.09004 * 109.52952 * 58.31661 * 17 16 15 40 40 H 1.08997 * 109.47369 * 50.28312 * 19 18 17 41 41 H 1.08995 * 109.47168 * 170.28558 * 19 18 17 42 42 H 1.08993 * 115.55088 * 28.16294 * 20 19 18 43 43 H 1.09002 * 117.49580 * 0.02562 * 21 20 19 44 44 H 1.08998 * 117.49714 * 145.01912 * 21 20 19 45 45 H 1.08999 * 117.49748 * 252.50690 * 22 21 20 46 46 H 1.09005 * 117.49876 * 107.49385 * 22 21 20 47 47 H 1.08000 * 119.89047 * 359.76029 * 24 23 18 48 48 H 1.08002 * 119.84841 * 179.97438 * 25 24 23 49 49 H 1.07995 * 120.01560 * 180.10553 * 26 25 24 50 50 H 1.07994 * 119.99780 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 16 2.6592 -6.3658 -0.0004 13 8 3.3551 -6.4262 1.2371 14 8 3.3568 -6.4261 -1.2369 15 7 1.7089 -7.7220 -0.0019 16 6 1.4117 -8.4446 1.2463 17 6 1.4946 -9.9453 0.9339 18 7 0.4868 -10.2831 -0.0751 19 6 0.5477 -11.7089 -0.4232 20 6 1.8346 -11.9891 -1.2021 21 6 1.6946 -12.4966 -2.6386 22 6 2.1567 -13.4478 -1.5329 23 6 0.5695 -9.4844 -1.2186 24 6 0.0448 -9.9660 -2.4134 25 6 0.1073 -9.1980 -3.5597 26 6 0.6902 -7.9447 -3.5287 27 6 1.2162 -7.4564 -2.3468 28 6 1.1595 -8.2238 -1.1934 29 1 -0.4850 0.8401 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8720 -3.6043 0.8894 33 1 2.8721 -3.6043 -0.8905 34 1 0.8540 -5.0445 -0.8914 35 1 0.8534 -5.0450 0.8886 36 1 0.4086 -8.1921 1.5899 37 1 2.1435 -8.1838 2.0108 38 1 1.3068 -10.5175 1.8424 39 1 2.4872 -10.1836 0.5517 40 1 0.5374 -12.3063 0.4884 41 1 -0.3134 -11.9699 -1.0383 42 1 2.6714 -11.3266 -0.9813 43 1 0.6857 -12.6305 -3.0290 44 1 2.4393 -12.1677 -3.3634 45 1 3.2054 -13.7447 -1.5303 46 1 1.4518 -14.2078 -1.1958 47 1 -0.4127 -10.9438 -2.4449 48 1 -0.3016 -9.5779 -4.4843 49 1 0.7350 -7.3474 -4.4274 50 1 1.6712 -6.4773 -2.3222 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074977041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:34 Heat of formation + Delta-G solvation = -25.070799 kcal Electronic energy + Delta-G solvation = -31517.358265 eV Core-core repulsion = 27443.776350 eV Total energy + Delta-G solvation = -4073.581915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.88887 -38.94530 -38.44360 -37.56939 -37.29223 -36.54784 -36.05951 -34.22980 -31.64865 -31.07339 -29.77609 -29.36181 -26.17441 -25.70718 -24.91400 -23.86202 -23.12553 -22.42658 -22.02115 -20.81091 -20.12688 -19.15257 -18.62040 -18.51697 -17.56180 -17.37257 -17.07414 -16.95704 -16.51246 -16.10845 -15.89869 -15.68493 -15.24506 -15.13506 -14.90301 -14.56469 -14.54764 -14.21634 -13.95980 -13.89684 -13.70624 -13.62449 -13.42281 -13.24869 -13.08781 -12.99685 -12.81022 -12.75576 -12.69313 -12.62732 -12.42341 -12.27831 -12.22212 -11.83597 -11.74608 -11.56992 -11.39644 -11.28387 -11.02152 -10.91493 -10.66702 -10.59963 -9.31873 -8.46284 -8.24580 -6.36193 -1.06539 0.43946 0.48580 1.30594 1.39098 1.40003 1.51377 2.37837 2.49457 2.57244 2.88119 2.89941 3.04302 3.08814 3.29954 3.61400 3.70642 3.71477 3.78004 3.94828 4.01038 4.07770 4.14260 4.15276 4.27913 4.32429 4.36565 4.43323 4.46194 4.56781 4.58198 4.68068 4.75384 4.80869 4.82240 4.83002 4.86586 4.93213 4.98679 5.05137 5.18952 5.24653 5.28573 5.33744 5.41336 5.56258 5.57560 5.68844 5.75915 5.82309 6.02835 6.15818 6.31645 6.78983 7.33235 8.86958 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002347 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.884636 B =11928.664920 C =12490.189676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.032 3.968 10 C -0.103 4.103 11 C -0.604 4.604 12 S 2.616 3.384 13 O -0.971 6.971 14 O -0.971 6.971 15 N -0.942 5.942 16 C 0.094 3.906 17 C 0.045 3.955 18 N -0.487 5.487 19 C 0.089 3.911 20 C -0.199 4.199 21 C -0.171 4.171 22 C -0.164 4.164 23 C 0.088 3.912 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.174 4.174 28 C 0.118 3.882 29 H 0.265 0.735 30 H 0.002 0.998 31 H 0.004 0.996 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.045 0.955 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.153 0.847 48 H 0.152 0.848 49 H 0.138 0.862 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 -30.595 -2.606 30.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.143 4.143 11 C -0.736 4.736 12 S 2.715 3.285 13 O -0.961 6.961 14 O -0.961 6.961 15 N -0.768 5.768 16 C -0.030 4.030 17 C -0.082 4.082 18 N -0.201 5.201 19 C -0.036 4.036 20 C -0.218 4.218 21 C -0.208 4.208 22 C -0.202 4.202 23 C -0.013 4.013 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.196 4.196 28 C 0.021 3.979 29 H 0.074 0.926 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.132 0.868 47 H 0.171 0.829 48 H 0.170 0.830 49 H 0.156 0.844 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.104 -30.430 -2.187 30.529 hybrid contribution 0.544 1.657 -0.290 1.768 sum -0.560 -28.774 -2.478 28.885 Atomic orbital electron populations 1.70078 1.07668 1.27961 1.51228 1.25959 0.95836 1.03312 0.94516 0.85455 0.78692 0.78385 0.78604 1.19674 1.20480 1.18834 1.21707 0.93749 0.92338 1.51234 0.92034 1.18949 0.93935 0.91742 0.95978 1.21335 0.98693 0.91925 1.02327 1.30527 1.16359 1.13504 1.13171 1.04883 0.75348 0.75016 0.73290 1.93524 1.70743 1.86146 1.45705 1.93557 1.71316 1.85821 1.45456 1.55880 1.65880 1.42471 1.12608 1.22298 1.04400 0.91920 0.84364 1.22477 0.93438 0.95361 0.96972 1.58646 1.46967 1.05048 1.09408 1.22056 0.95634 0.84940 1.00966 1.22888 1.00225 0.98568 1.00161 1.23084 1.03345 1.03390 0.90972 1.23000 1.02538 0.91916 1.02698 1.18518 0.99887 0.91348 0.91571 1.21210 1.01388 1.01265 0.90263 1.21235 0.99461 0.93735 0.99192 1.21112 0.98752 0.97235 0.97002 1.21238 1.03956 1.00926 0.93453 1.17403 1.00144 0.95007 0.85360 0.92579 0.97926 0.97803 0.91170 0.91342 0.84131 0.83425 0.88162 0.86620 0.85060 0.93694 0.87668 0.88198 0.90512 0.86998 0.90047 0.89227 0.86833 0.82915 0.82985 0.84373 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.68 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.39 7.74 -2.92 -0.02 3.37 16 9 C 0.03 1.70 4.97 29.85 0.15 1.84 16 10 C -0.10 -4.32 5.16 30.59 0.16 -4.16 16 11 C -0.60 -19.82 6.04 71.98 0.43 -19.39 16 12 S 2.62 83.37 4.85 -56.49 -0.27 83.10 16 13 O -0.97 -34.09 16.48 -127.65 -2.10 -36.19 16 14 O -0.97 -36.01 15.02 -127.65 -1.92 -37.93 16 15 N -0.94 -24.90 3.25 -336.18 -1.09 -25.99 16 16 C 0.09 1.88 6.70 86.40 0.58 2.46 16 17 C 0.05 0.74 5.42 86.54 0.47 1.21 16 18 N -0.49 -8.20 4.76 -694.62 -3.30 -11.50 16 19 C 0.09 0.99 5.14 86.31 0.44 1.43 16 20 C -0.20 -2.62 4.32 -10.79 -0.05 -2.66 16 21 C -0.17 -1.95 8.70 30.59 0.27 -1.68 16 22 C -0.16 -1.60 10.25 30.59 0.31 -1.28 16 23 C 0.09 1.91 5.15 38.32 0.20 2.11 16 24 C -0.12 -2.10 7.44 22.45 0.17 -1.93 16 25 C -0.12 -2.09 10.02 22.25 0.22 -1.86 16 26 C -0.12 -2.80 10.05 22.28 0.22 -2.58 16 27 C -0.17 -4.94 8.49 22.38 0.19 -4.75 16 28 C 0.12 3.17 6.26 38.09 0.24 3.41 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.14 4.33 7.35 -2.39 -0.02 4.32 16 35 H 0.15 4.29 8.14 -2.39 -0.02 4.27 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.12 2.24 6.82 -2.39 -0.02 2.22 16 38 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.04 0.84 6.53 -2.38 -0.02 0.82 16 40 H 0.11 0.79 8.08 -2.39 -0.02 0.77 16 41 H 0.10 0.85 6.12 -2.39 -0.01 0.84 16 42 H 0.08 1.45 6.63 -2.39 -0.02 1.44 16 43 H 0.11 0.91 7.20 -2.39 -0.02 0.89 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 47 H 0.15 1.79 4.83 -2.91 -0.01 1.78 16 48 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 49 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 50 H 0.12 3.74 4.77 -2.91 -0.01 3.73 16 Total: -1.00 -75.45 399.10 -0.74 -76.19 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.94 Total: 20.51 kcal Atomic # 6 Polarization: -63.42 SS G_CDS: 4.70 Total: -58.72 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -4.11 Total: -93.41 kcal Atomic # 8 Polarization: -70.10 SS G_CDS: -4.02 Total: -74.12 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 83.37 SS G_CDS: -0.27 Total: 83.10 kcal Total: -75.45 -0.74 -76.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074977041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.118 kcal (2) G-P(sol) polarization free energy of solvation -75.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds