Wall clock time and date at job start Tue Mar 31 2020 05:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00176 * 2 1 4 4 H 1.48506 * 109.47072 * 275.37401 * 3 2 1 5 5 H 1.48493 * 109.47264 * 35.37368 * 3 2 1 6 6 H 1.48498 * 109.47160 * 155.37864 * 3 2 1 7 7 C 1.38820 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99899 * 35.24474 * 7 2 1 9 9 N 1.36939 * 119.99642 * 215.23996 * 7 2 1 10 10 C 1.46961 * 120.59358 * 207.33996 * 9 7 2 11 11 C 1.53370 * 108.63344 * 235.25371 * 10 9 7 12 12 N 1.46966 * 108.63675 * 310.57069 * 11 10 9 13 13 C 1.34775 * 120.59626 * 235.20658 * 12 11 10 14 14 O 1.21275 * 120.00368 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99780 * 179.97438 * 13 12 11 16 16 C 1.50694 * 109.47008 * 180.02562 * 15 13 12 17 17 C 1.33446 * 122.71904 * 84.97641 * 16 15 13 18 18 S 1.76176 * 108.06226 * 179.80082 * 17 16 15 19 19 C 1.70965 * 90.33898 * 0.28650 * 18 17 16 20 20 N 1.39004 * 124.94297 * 179.97438 * 19 18 17 21 21 C 1.46761 * 124.34759 * 359.89031 * 20 19 18 22 22 C 1.54481 * 105.53545 * 163.21591 * 21 20 19 23 23 C 1.54625 * 101.76518 * 25.20517 * 22 21 20 24 24 C 1.34418 * 124.35321 * 179.71624 * 20 19 18 25 25 O 1.21281 * 124.93767 * 0.42986 * 24 20 19 26 26 N 1.29624 * 110.11303 * 359.70776 * 19 18 17 27 27 C 1.46965 * 118.80609 * 55.48022 * 12 11 10 28 28 C 1.46962 * 120.59511 * 27.36500 * 9 7 2 29 29 H 0.96999 * 119.99837 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.61520 * 115.50626 * 10 9 7 31 31 H 1.09005 * 109.74934 * 355.07521 * 10 9 7 32 32 H 1.09008 * 109.60899 * 190.83319 * 11 10 9 33 33 H 1.09002 * 109.75636 * 70.40455 * 11 10 9 34 34 H 1.09002 * 109.47421 * 60.00098 * 15 13 12 35 35 H 1.09003 * 109.46899 * 300.00093 * 15 13 12 36 36 H 1.07999 * 125.96778 * 0.04283 * 17 16 15 37 37 H 1.09000 * 110.39516 * 44.09750 * 21 20 19 38 38 H 1.09010 * 110.04169 * 282.14337 * 21 20 19 39 39 H 1.09004 * 110.96637 * 267.08653 * 22 21 20 40 40 H 1.08994 * 111.00162 * 143.34127 * 22 21 20 41 41 H 1.09002 * 110.48965 * 216.52740 * 23 22 21 42 42 H 1.08998 * 110.60034 * 93.93538 * 23 22 21 43 43 H 1.09004 * 109.60905 * 64.26919 * 27 12 11 44 44 H 1.09004 * 109.61008 * 184.77737 * 27 12 11 45 45 H 1.08999 * 109.61091 * 244.49268 * 28 9 7 46 46 H 1.09000 * 109.61060 * 5.00582 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3842 2.1119 -1.3940 5 1 1.5092 2.6172 0.8105 6 1 3.6000 1.4099 0.5833 7 6 2.0103 -1.2022 -0.0005 8 1 1.6187 -2.0516 -0.5407 9 7 3.1914 -1.3112 0.6837 10 6 4.2161 -2.2750 0.2584 11 6 4.5597 -3.1814 1.4469 12 7 4.8253 -2.3370 2.6201 13 6 5.9874 -2.4449 3.2941 14 8 6.8255 -3.2439 2.9337 15 6 6.2458 -1.5719 4.4950 16 6 7.6061 -1.8871 5.0617 17 6 8.7268 -1.3287 4.6001 18 16 10.0783 -1.9624 5.5358 19 6 9.0045 -2.9253 6.4538 20 7 9.3829 -3.7801 7.4825 21 6 10.7674 -3.9791 7.9268 22 6 10.6643 -4.6440 9.3174 23 6 9.2821 -5.3325 9.2359 24 6 8.5274 -4.5281 8.2006 25 8 7.3259 -4.5577 8.0384 26 7 7.7856 -2.7380 6.0546 27 6 3.7983 -1.3771 3.0488 28 6 3.4569 -0.4668 1.8569 29 1 -0.4850 0.8401 0.0004 30 1 5.1095 -1.7406 -0.0645 31 1 3.8342 -2.8796 -0.5643 32 1 5.4460 -3.7714 1.2128 33 1 3.7223 -3.8468 1.6570 34 1 5.4841 -1.7601 5.2517 35 1 6.2106 -0.5241 4.1967 36 1 8.7932 -0.6107 3.7961 37 1 11.2831 -3.0219 8.0036 38 1 11.2917 -4.6361 7.2326 39 1 10.6812 -3.8956 10.1097 40 1 11.4578 -5.3776 9.4594 41 1 8.7750 -5.2853 10.1996 42 1 9.3879 -6.3678 8.9118 43 1 2.9059 -1.9149 3.3692 44 1 4.1813 -0.7752 3.8729 45 1 4.2962 0.1964 1.6479 46 1 2.5707 0.1232 2.0910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075144479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:23 Heat of formation + Delta-G solvation = 34.572293 kcal Electronic energy + Delta-G solvation = -30208.144259 eV Core-core repulsion = 26033.608319 eV Total energy + Delta-G solvation = -4174.535939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.136 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.26386 -40.14970 -39.07573 -37.00342 -36.89266 -33.92375 -33.70030 -31.87672 -31.15364 -30.39993 -28.34244 -28.19826 -26.89251 -25.21775 -23.50894 -23.18479 -22.79566 -21.52931 -20.42629 -19.25409 -18.84737 -18.27053 -17.37080 -17.19294 -17.02146 -16.19706 -15.78778 -15.67274 -15.23846 -14.77712 -14.68293 -14.51197 -14.29873 -14.25365 -14.08961 -13.73914 -13.63935 -13.35712 -13.29117 -13.03220 -12.98198 -12.66652 -12.24732 -12.15795 -12.01257 -11.89196 -11.65392 -11.41707 -11.01358 -10.81307 -10.64862 -10.46492 -10.45228 -10.34060 -10.16110 -9.62802 -9.57393 -9.47931 -9.32266 -8.72169 -8.33216 -8.20889 -7.00536 -6.09138 -3.30989 0.55631 0.80087 1.45582 2.11736 2.20488 2.76628 2.92291 3.33451 3.43468 3.47327 3.51643 3.71063 3.77619 4.15100 4.21290 4.44805 4.50980 4.75580 4.80846 4.85332 4.85438 4.99807 5.07783 5.17242 5.17927 5.25819 5.32065 5.37198 5.54081 5.59883 5.63978 5.71819 5.82731 5.93094 5.98232 6.09657 6.14484 6.28292 6.42644 6.51409 6.58477 6.75602 6.95486 7.57862 7.75590 7.78484 7.88170 8.24861 8.47814 8.87784 9.65886 10.05897 11.05402 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.002110 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.053143 B =13268.817405 C =13652.725453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.037 3.963 3 Si 0.837 3.163 4 H -0.293 1.293 5 H -0.294 1.294 6 H -0.255 1.255 7 C -0.273 4.273 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.134 3.866 11 C 0.097 3.903 12 N -0.598 5.598 13 C 0.518 3.482 14 O -0.548 6.548 15 C -0.069 4.069 16 C 0.124 3.876 17 C -0.257 4.257 18 S 0.122 5.878 19 C 0.280 3.720 20 N -0.536 5.536 21 C 0.096 3.904 22 C -0.127 4.127 23 C -0.150 4.150 24 C 0.514 3.486 25 O -0.469 6.469 26 N -0.475 5.475 27 C 0.083 3.917 28 C 0.131 3.869 29 H 0.263 0.737 30 H 0.026 0.974 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.181 0.819 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.034 0.966 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.834 -5.587 19.813 33.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.164 4.164 3 Si 0.664 3.336 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.180 1.180 7 C -0.401 4.401 8 H 0.100 0.900 9 N -0.323 5.323 10 C 0.007 3.993 11 C -0.027 4.027 12 N -0.331 5.331 13 C 0.305 3.695 14 O -0.426 6.426 15 C -0.112 4.112 16 C -0.007 4.007 17 C -0.396 4.396 18 S 0.373 5.627 19 C -0.088 4.088 20 N -0.268 5.268 21 C -0.026 4.026 22 C -0.165 4.165 23 C -0.191 4.191 24 C 0.299 3.701 25 O -0.337 6.337 26 N -0.196 5.196 27 C -0.041 4.041 28 C 0.004 3.996 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.198 0.802 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 26.048 -6.110 19.785 33.276 hybrid contribution -0.531 1.319 -0.569 1.531 sum 25.517 -4.791 19.216 32.301 Atomic orbital electron populations 1.70087 1.06172 1.26900 1.48989 1.25250 0.94853 0.97496 0.98788 0.87590 0.82068 0.85874 0.78044 1.22040 1.22047 1.18016 1.18784 0.94804 0.96549 1.29919 0.90014 1.44268 1.16587 1.42962 1.28493 1.21336 0.91869 0.91802 0.94278 1.22196 1.01075 0.93451 0.85959 1.47984 1.16321 1.39231 1.29574 1.20198 0.81710 0.83737 0.83826 1.90659 1.45151 1.38260 1.68556 1.20260 0.93110 1.00962 0.96863 1.19218 0.95766 0.93340 0.92407 1.26512 0.93213 1.11378 1.08538 1.83625 1.11543 1.38344 1.29179 1.23201 0.92392 0.97758 0.95413 1.45357 1.10028 1.40334 1.31058 1.22398 0.80411 1.02745 0.97063 1.22604 0.97473 1.00738 0.95665 1.22346 0.96222 1.00637 0.99846 1.21256 0.87018 0.79642 0.82226 1.90839 1.13142 1.62495 1.67210 1.66086 1.19064 1.19116 1.15346 1.22652 0.91083 0.91890 0.98483 1.21829 0.99475 0.92171 0.86100 0.92713 0.95615 0.90737 0.89800 0.91537 0.86917 0.86935 0.80195 0.89173 0.89399 0.89260 0.88121 0.87149 0.86995 0.90722 0.90644 0.94803 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 13.97 55.49 0.78 -25.29 16 2 C 0.04 1.04 4.85 -17.43 -0.08 0.96 16 3 Si 0.84 20.55 26.43 -169.99 -4.49 16.06 16 4 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -5.88 4.82 56.52 0.27 -5.61 16 7 C -0.27 -7.38 9.86 -15.06 -0.15 -7.53 16 8 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 9 N -0.60 -13.84 2.70 -171.77 -0.46 -14.30 16 10 C 0.13 2.66 6.67 -3.60 -0.02 2.64 16 11 C 0.10 1.77 6.59 -3.60 -0.02 1.75 16 12 N -0.60 -10.66 2.94 -172.21 -0.51 -11.16 16 13 C 0.52 9.14 7.69 -10.99 -0.08 9.05 16 14 O -0.55 -11.32 15.44 5.56 0.09 -11.23 16 15 C -0.07 -0.98 4.45 -29.04 -0.13 -1.11 16 16 C 0.12 1.85 5.23 -84.20 -0.44 1.41 16 17 C -0.26 -3.18 11.12 29.06 0.32 -2.85 16 18 S 0.12 1.23 22.55 -107.50 -2.42 -1.19 16 19 C 0.28 3.68 7.88 -87.35 -0.69 2.99 16 20 N -0.54 -5.55 3.11 -116.20 -0.36 -5.92 16 21 C 0.10 0.45 6.81 -3.12 -0.02 0.42 16 22 C -0.13 -0.29 7.18 -25.10 -0.18 -0.47 16 23 C -0.15 -0.78 6.86 -26.74 -0.18 -0.97 16 24 C 0.51 5.92 7.98 -10.86 -0.09 5.84 16 25 O -0.47 -7.93 16.86 5.56 0.09 -7.84 16 26 N -0.48 -7.80 9.44 -11.28 -0.11 -7.91 16 27 C 0.08 1.42 6.53 -3.37 -0.02 1.39 16 28 C 0.13 2.69 4.53 -3.37 -0.02 2.67 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 1.44 7.94 -51.93 -0.41 1.03 16 32 H 0.08 1.51 6.99 -51.92 -0.36 1.15 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.11 1.54 7.90 -51.93 -0.41 1.13 16 35 H 0.11 1.27 7.73 -51.93 -0.40 0.87 16 36 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.09 0.29 8.04 -51.93 -0.42 -0.13 16 38 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 39 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 40 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.08 1.01 5.91 -51.93 -0.31 0.71 16 45 H 0.03 0.69 6.69 -51.93 -0.35 0.35 16 46 H 0.08 1.69 5.59 -51.93 -0.29 1.40 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -38.52 383.09 -9.88 -48.40 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.44 Total: -1.57 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: -1.81 Total: 16.18 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.66 Total: -64.58 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.07 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.49 Total: 16.06 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.42 Total: -1.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.52 -9.88 -48.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075144479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.974 kcal (2) G-P(sol) polarization free energy of solvation -38.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds