Wall clock time and date at job start Tue Mar 31 2020 07:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.53891 * 2 1 4 4 C 1.53098 * 109.50706 * 239.89158 * 2 1 3 5 5 N 1.47017 * 109.25521 * 183.21506 * 4 2 1 6 6 C 1.40086 * 110.99779 * 182.38910 * 5 4 2 7 7 C 1.38796 * 120.01425 * 300.00324 * 6 5 4 8 8 C 1.38114 * 120.02233 * 180.02562 * 7 6 5 9 9 C 1.38834 * 120.03953 * 359.97438 * 8 7 6 10 10 N 1.40191 * 119.98910 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99760 * 144.90903 * 10 9 8 12 12 O 1.21596 * 120.00517 * 4.58920 * 11 10 9 13 13 N 1.34778 * 119.99978 * 184.58715 * 11 10 9 14 14 C 1.46503 * 119.99810 * 359.97438 * 13 11 10 15 15 C 1.46498 * 120.00051 * 180.02562 * 13 11 10 16 16 C 1.50697 * 109.47621 * 89.99988 * 15 13 11 17 17 H 1.08003 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00503 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00232 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99799 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47209 * 89.99928 * 20 18 16 22 22 H 1.48497 * 109.47173 * 209.99903 * 20 18 16 23 23 H 1.48504 * 109.47071 * 329.99921 * 20 18 16 24 24 C 1.38836 * 120.02212 * 0.02562 * 9 8 7 25 25 C 1.38240 * 119.98175 * 359.69839 * 24 9 8 26 26 F 1.35102 * 120.02558 * 180.29788 * 25 24 9 27 27 C 1.47014 * 110.75072 * 58.61835 * 5 4 2 28 28 C 1.53100 * 109.25501 * 301.37873 * 27 5 4 29 29 H 1.09004 * 109.51145 * 296.91498 * 28 27 5 30 30 C 1.53006 * 109.50527 * 176.82938 * 28 27 5 31 31 O 1.43012 * 109.50448 * 120.10479 * 2 1 3 32 32 H 1.08999 * 109.47224 * 180.10634 * 1 2 3 33 33 H 1.08996 * 109.47187 * 300.11374 * 1 2 3 34 34 H 1.09004 * 109.47129 * 60.10758 * 1 2 3 35 35 H 1.09000 * 109.50404 * 303.15237 * 4 2 1 36 36 H 1.09003 * 109.50380 * 63.28064 * 4 2 1 37 37 H 1.08002 * 119.99018 * 0.02562 * 7 6 5 38 38 H 1.07999 * 119.98827 * 179.97438 * 8 7 6 39 39 H 0.97004 * 120.00255 * 324.90965 * 10 9 8 40 40 H 1.08998 * 109.46744 * 90.00311 * 14 13 11 41 41 H 1.08997 * 109.47197 * 209.99724 * 14 13 11 42 42 H 1.08991 * 109.47149 * 329.99932 * 14 13 11 43 43 H 1.09007 * 109.46737 * 210.00044 * 15 13 11 44 44 H 1.08998 * 109.47318 * 329.99262 * 15 13 11 45 45 H 0.97000 * 120.00240 * 179.97438 * 19 18 16 46 46 H 1.08001 * 120.00813 * 179.97438 * 24 9 8 47 47 H 1.08990 * 109.51058 * 61.31314 * 27 5 4 48 48 H 1.08998 * 109.50318 * 181.44781 * 27 5 4 49 49 H 1.09001 * 109.46805 * 60.00133 * 30 28 27 50 50 H 1.08997 * 109.47128 * 180.02562 * 30 28 27 51 51 H 1.09001 * 109.47070 * 299.99997 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2484 5 7 3.5094 -0.7884 -1.2044 6 6 4.0199 -1.3973 -2.3581 7 6 3.6594 -2.7000 -2.6731 8 6 4.1631 -3.3007 -3.8102 9 6 5.0299 -2.6019 -4.6395 10 7 5.5409 -3.2128 -5.7932 11 6 5.7515 -2.4818 -6.9058 12 8 5.5779 -1.2785 -6.8847 13 7 6.1547 -3.0846 -8.0418 14 6 6.3645 -4.5343 -8.0671 15 6 6.3842 -2.2900 -9.2510 16 6 7.8185 -1.8290 -9.2846 17 1 8.4920 -2.1012 -8.4853 18 6 8.2714 -1.0608 -10.3361 19 7 9.5230 -0.6581 -10.3651 20 14 7.1068 -0.5908 -11.7189 21 1 6.4416 0.6955 -11.3901 22 1 7.8727 -0.4432 -12.9825 23 1 6.0801 -1.6511 -11.8833 24 6 5.3916 -1.2986 -4.3261 25 6 4.8836 -0.6946 -3.1912 26 9 5.2303 0.5756 -2.8886 27 6 3.9640 -1.4884 0.0059 28 6 3.4334 -0.7567 1.2416 29 1 3.8534 0.2486 1.2778 30 6 3.8367 -1.5244 2.5022 31 8 2.0075 -0.6762 1.1662 32 1 -0.3633 -1.0276 0.0019 33 1 -0.3633 0.5156 0.8889 34 1 -0.3633 0.5122 -0.8910 35 1 1.6332 -1.7343 -1.2759 36 1 1.7273 -0.1794 -2.1390 37 1 2.9848 -3.2443 -2.0288 38 1 3.8825 -4.3146 -4.0546 39 1 5.7429 -4.1615 -5.7908 40 1 5.4360 -5.0309 -8.3487 41 1 7.1406 -4.7765 -8.7931 42 1 6.6730 -4.8741 -7.0785 43 1 6.1777 -2.8995 -10.1308 44 1 5.7238 -1.4228 -9.2467 45 1 9.8417 -0.1180 -11.1051 46 1 6.0663 -0.7554 -4.9712 47 1 3.5866 -2.5108 -0.0016 48 1 5.0536 -1.5019 0.0308 49 1 4.9234 -1.5881 2.5567 50 1 3.4583 -1.0033 3.3816 51 1 3.4151 -2.5290 2.4663 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075572828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:25 Heat of formation + Delta-G solvation = -64.987172 kcal Electronic energy + Delta-G solvation = -33318.130252 eV Core-core repulsion = 28747.011441 eV Total energy + Delta-G solvation = -4571.118811 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.190 amu Computer time = 3.91 seconds Orbital eigenvalues (eV) -48.62913 -40.74570 -40.12774 -38.51638 -36.25285 -35.03338 -34.06817 -33.92765 -32.48345 -30.73923 -30.62913 -29.05224 -28.07484 -27.05838 -26.12463 -24.92254 -23.21143 -22.66177 -22.29973 -21.46024 -20.60064 -19.64206 -18.33155 -17.35468 -17.12718 -17.00902 -16.94091 -16.24837 -15.93518 -15.73537 -15.71659 -15.17105 -14.99240 -14.86888 -14.66399 -14.27326 -13.95733 -13.75855 -13.53200 -13.41009 -13.20370 -13.01330 -12.82823 -12.54365 -12.47817 -12.45281 -12.34419 -12.29547 -12.18857 -12.09159 -11.79810 -11.66430 -11.52991 -11.31617 -11.01092 -10.79401 -10.56932 -10.25617 -10.06015 -9.90470 -9.64797 -9.44872 -8.83060 -8.77219 -8.62325 -8.16383 -7.75590 -6.12037 -4.11515 1.02877 1.18117 2.89494 3.26900 3.27416 3.32953 3.34339 3.35723 3.39975 3.77500 4.16948 4.36247 4.39311 4.41931 4.53059 4.67673 4.70958 4.77674 4.80771 4.97579 5.05000 5.09267 5.13984 5.19697 5.20255 5.21042 5.29118 5.35929 5.39268 5.53143 5.57334 5.57750 5.65936 5.68523 5.74177 5.79034 5.85388 5.90986 5.98381 6.12058 6.15710 6.47975 6.50674 6.51484 6.79713 6.82632 6.92066 7.12793 7.16382 7.34762 7.56127 8.30339 8.42607 8.89812 8.99883 9.47479 11.01216 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.001979 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.514600 B =14147.985777 C =14411.326288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.069 0.931 4 C 0.029 3.971 5 N -0.493 5.493 6 C 0.017 3.983 7 C -0.099 4.099 8 C -0.157 4.157 9 C 0.211 3.789 10 N -0.694 5.694 11 C 0.699 3.301 12 O -0.564 6.564 13 N -0.605 5.605 14 C 0.083 3.917 15 C 0.230 3.770 16 C -0.532 4.532 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.155 4.155 25 C 0.150 3.850 26 F -0.126 7.126 27 C 0.029 3.971 28 C 0.090 3.910 29 H 0.068 0.932 30 C -0.143 4.143 31 O -0.380 6.380 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.406 0.594 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.033 0.967 44 H 0.039 0.961 45 H 0.265 0.735 46 H 0.162 0.838 47 H 0.048 0.952 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.066 0.934 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 -7.627 22.241 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.087 0.913 4 C -0.098 4.098 5 N -0.214 5.214 6 C -0.079 4.079 7 C -0.120 4.120 8 C -0.179 4.179 9 C 0.114 3.886 10 N -0.343 5.343 11 C 0.401 3.599 12 O -0.440 6.440 13 N -0.340 5.340 14 C -0.061 4.061 15 C 0.109 3.891 16 C -0.570 4.570 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.177 4.177 25 C 0.129 3.871 26 F -0.104 7.104 27 C -0.097 4.097 28 C 0.032 3.968 29 H 0.086 0.914 30 C -0.201 4.201 31 O -0.300 6.300 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.243 0.757 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.180 0.820 47 H 0.066 0.934 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.558 -6.197 22.160 27.776 hybrid contribution -0.271 -0.779 -1.113 1.385 sum -15.828 -6.976 21.047 27.243 Atomic orbital electron populations 1.21743 0.92576 1.02989 1.02817 1.22151 0.94854 0.95788 0.83973 0.91349 1.22921 0.86496 1.00635 0.99780 1.59731 1.09305 1.52184 1.00212 1.18569 1.01918 0.92834 0.94536 1.21101 0.99674 0.94167 0.97039 1.20743 0.99088 1.01340 0.96692 1.17260 0.92801 0.92264 0.86262 1.43005 1.68383 1.12849 1.10097 1.15877 0.78800 0.85224 0.79994 1.90912 1.57731 1.12069 1.83286 1.47150 1.68537 1.07490 1.10839 1.21641 1.01340 0.81211 1.01953 1.19650 0.98009 0.91133 0.80280 1.21323 0.94011 1.33136 1.08566 0.90754 1.24851 0.95064 0.95115 0.97963 1.69892 1.14969 1.36389 1.32132 0.86849 0.81182 0.79856 0.81769 1.19829 1.21037 1.19075 1.21422 1.03403 0.96255 0.96578 1.17299 0.96290 0.79788 0.93764 1.91504 1.90300 1.35828 1.92748 1.22912 1.01462 0.96140 0.89224 1.22151 0.81252 0.99294 0.94107 0.91364 1.21743 1.01538 1.00648 0.96177 1.87972 1.20867 1.78424 1.42739 0.91851 0.91472 0.90765 0.93379 0.89348 0.85397 0.85189 0.75666 0.93390 0.89898 0.92820 0.94895 0.94292 0.92496 0.82013 0.93404 0.89406 0.90782 0.91474 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.57 37.16 0.36 -0.63 16 2 C 0.09 0.81 3.43 -26.68 -0.09 0.72 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 4 C 0.03 0.28 4.65 -3.71 -0.02 0.26 16 5 N -0.49 -5.61 4.54 -170.66 -0.77 -6.39 16 6 C 0.02 0.21 4.75 -83.57 -0.40 -0.18 16 7 C -0.10 -1.06 8.62 -39.42 -0.34 -1.40 16 8 C -0.16 -1.73 9.96 -39.41 -0.39 -2.12 16 9 C 0.21 3.05 6.30 -83.59 -0.53 2.52 16 10 N -0.69 -10.29 5.22 -14.18 -0.07 -10.37 16 11 C 0.70 13.99 8.12 -86.92 -0.71 13.29 16 12 O -0.56 -13.66 13.36 5.28 0.07 -13.59 16 13 N -0.61 -11.98 2.86 -188.75 -0.54 -12.52 16 14 C 0.08 1.15 10.24 59.85 0.61 1.77 16 15 C 0.23 5.47 4.23 -5.20 -0.02 5.45 16 16 C -0.53 -15.00 9.94 -34.44 -0.34 -15.34 16 17 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 20 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 24 C -0.15 -2.58 8.67 -39.36 -0.34 -2.92 16 25 C 0.15 2.29 7.31 -39.28 -0.29 2.00 16 26 F -0.13 -2.08 17.07 2.25 0.04 -2.05 16 27 C 0.03 0.28 4.69 -3.71 -0.02 0.26 16 28 C 0.09 0.79 3.42 -26.68 -0.09 0.70 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 C -0.14 -0.95 9.57 37.16 0.36 -0.59 16 31 O -0.38 -3.79 10.11 -35.23 -0.36 -4.15 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.45 7.22 -51.93 -0.37 0.07 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.13 1.10 7.04 -52.49 -0.37 0.73 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.41 4.53 6.52 -40.82 -0.27 4.27 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.05 0.59 6.30 -51.93 -0.33 0.26 16 43 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 44 H 0.04 1.00 6.85 -51.93 -0.36 0.64 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.16 3.22 6.22 -52.49 -0.33 2.90 16 47 H 0.05 0.43 7.41 -51.93 -0.38 0.05 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 411.02 15.07 6.19 6.19 Total: -1.00 -34.61 411.02 -9.54 -44.15 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.86 Total: 2.91 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -2.35 Total: 5.79 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.61 Total: -55.88 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.29 Total: -17.74 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.61 -9.54 -44.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075572828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.838 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.91 seconds