Wall clock time and date at job start Tue Mar 31 2020 07:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.53891 * 2 1 4 4 C 1.53098 * 109.50706 * 239.89158 * 2 1 3 5 5 N 1.47017 * 109.25521 * 183.21506 * 4 2 1 6 6 C 1.40086 * 110.99779 * 182.38910 * 5 4 2 7 7 C 1.38796 * 120.01425 * 300.00324 * 6 5 4 8 8 C 1.38114 * 120.02233 * 180.02562 * 7 6 5 9 9 C 1.38834 * 120.03953 * 359.97438 * 8 7 6 10 10 N 1.40191 * 119.98910 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99760 * 144.90903 * 10 9 8 12 12 O 1.21596 * 120.00517 * 4.58920 * 11 10 9 13 13 N 1.34778 * 119.99978 * 184.58715 * 11 10 9 14 14 C 1.46503 * 119.99810 * 359.97438 * 13 11 10 15 15 C 1.46498 * 120.00051 * 180.02562 * 13 11 10 16 16 C 1.50697 * 109.47621 * 89.99988 * 15 13 11 17 17 H 1.08003 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00503 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00232 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99799 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47209 * 89.99928 * 20 18 16 22 22 H 1.48497 * 109.47173 * 209.99903 * 20 18 16 23 23 H 1.48504 * 109.47071 * 329.99921 * 20 18 16 24 24 C 1.38836 * 120.02212 * 0.02562 * 9 8 7 25 25 C 1.38240 * 119.98175 * 359.69839 * 24 9 8 26 26 F 1.35102 * 120.02558 * 180.29788 * 25 24 9 27 27 C 1.47014 * 110.75072 * 58.61835 * 5 4 2 28 28 C 1.53100 * 109.25501 * 301.37873 * 27 5 4 29 29 H 1.09004 * 109.51145 * 296.91498 * 28 27 5 30 30 C 1.53006 * 109.50527 * 176.82938 * 28 27 5 31 31 O 1.43012 * 109.50448 * 120.10479 * 2 1 3 32 32 H 1.08999 * 109.47224 * 180.10634 * 1 2 3 33 33 H 1.08996 * 109.47187 * 300.11374 * 1 2 3 34 34 H 1.09004 * 109.47129 * 60.10758 * 1 2 3 35 35 H 1.09000 * 109.50404 * 303.15237 * 4 2 1 36 36 H 1.09003 * 109.50380 * 63.28064 * 4 2 1 37 37 H 1.08002 * 119.99018 * 0.02562 * 7 6 5 38 38 H 1.07999 * 119.98827 * 179.97438 * 8 7 6 39 39 H 0.97004 * 120.00255 * 324.90965 * 10 9 8 40 40 H 1.08998 * 109.46744 * 90.00311 * 14 13 11 41 41 H 1.08997 * 109.47197 * 209.99724 * 14 13 11 42 42 H 1.08991 * 109.47149 * 329.99932 * 14 13 11 43 43 H 1.09007 * 109.46737 * 210.00044 * 15 13 11 44 44 H 1.08998 * 109.47318 * 329.99262 * 15 13 11 45 45 H 0.97000 * 120.00240 * 179.97438 * 19 18 16 46 46 H 1.08001 * 120.00813 * 179.97438 * 24 9 8 47 47 H 1.08990 * 109.51058 * 61.31314 * 27 5 4 48 48 H 1.08998 * 109.50318 * 181.44781 * 27 5 4 49 49 H 1.09001 * 109.46805 * 60.00133 * 30 28 27 50 50 H 1.08997 * 109.47128 * 180.02562 * 30 28 27 51 51 H 1.09001 * 109.47070 * 299.99997 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2484 5 7 3.5094 -0.7884 -1.2044 6 6 4.0199 -1.3973 -2.3581 7 6 3.6594 -2.7000 -2.6731 8 6 4.1631 -3.3007 -3.8102 9 6 5.0299 -2.6019 -4.6395 10 7 5.5409 -3.2128 -5.7932 11 6 5.7515 -2.4818 -6.9058 12 8 5.5779 -1.2785 -6.8847 13 7 6.1547 -3.0846 -8.0418 14 6 6.3645 -4.5343 -8.0671 15 6 6.3842 -2.2900 -9.2510 16 6 7.8185 -1.8290 -9.2846 17 1 8.4920 -2.1012 -8.4853 18 6 8.2714 -1.0608 -10.3361 19 7 9.5230 -0.6581 -10.3651 20 14 7.1068 -0.5908 -11.7189 21 1 6.4416 0.6955 -11.3901 22 1 7.8727 -0.4432 -12.9825 23 1 6.0801 -1.6511 -11.8833 24 6 5.3916 -1.2986 -4.3261 25 6 4.8836 -0.6946 -3.1912 26 9 5.2303 0.5756 -2.8886 27 6 3.9640 -1.4884 0.0059 28 6 3.4334 -0.7567 1.2416 29 1 3.8534 0.2486 1.2778 30 6 3.8367 -1.5244 2.5022 31 8 2.0075 -0.6762 1.1662 32 1 -0.3633 -1.0276 0.0019 33 1 -0.3633 0.5156 0.8889 34 1 -0.3633 0.5122 -0.8910 35 1 1.6332 -1.7343 -1.2759 36 1 1.7273 -0.1794 -2.1390 37 1 2.9848 -3.2443 -2.0288 38 1 3.8825 -4.3146 -4.0546 39 1 5.7429 -4.1615 -5.7908 40 1 5.4360 -5.0309 -8.3487 41 1 7.1406 -4.7765 -8.7931 42 1 6.6730 -4.8741 -7.0785 43 1 6.1777 -2.8995 -10.1308 44 1 5.7238 -1.4228 -9.2467 45 1 9.8417 -0.1180 -11.1051 46 1 6.0663 -0.7554 -4.9712 47 1 3.5866 -2.5108 -0.0016 48 1 5.0536 -1.5019 0.0308 49 1 4.9234 -1.5881 2.5567 50 1 3.4583 -1.0033 3.3816 51 1 3.4151 -2.5290 2.4663 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075572828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:23 Heat of formation + Delta-G solvation = -88.803361 kcal Electronic energy + Delta-G solvation = -33319.163000 eV Core-core repulsion = 28747.011441 eV Total energy + Delta-G solvation = -4572.151558 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.190 amu Computer time = 3.91 seconds Orbital eigenvalues (eV) -49.86146 -41.87222 -41.20421 -39.59499 -37.33747 -36.59400 -35.25655 -34.70979 -34.48113 -31.69867 -31.50313 -30.58187 -29.31758 -27.73155 -27.45974 -25.96794 -24.50139 -24.12554 -22.95099 -22.57690 -21.49239 -20.98583 -19.62374 -19.16280 -18.68234 -18.04530 -17.65453 -17.41322 -17.13108 -16.85899 -16.60954 -16.50395 -16.31773 -16.17429 -15.64487 -15.55226 -15.17992 -15.07422 -14.79005 -14.49738 -14.41502 -14.01353 -13.83997 -13.69873 -13.60272 -13.43434 -13.39307 -13.21376 -13.04046 -12.90794 -12.85715 -12.84473 -12.75632 -12.50366 -12.43798 -12.04881 -11.96967 -11.75805 -11.51100 -11.34393 -11.08388 -10.83514 -10.63485 -9.91056 -9.63946 -9.57459 -9.07197 -8.34386 -6.39739 -0.03934 0.12449 1.32360 1.37880 1.45100 1.57478 2.02557 2.30759 2.46863 2.53643 2.68798 2.90059 3.00801 3.28850 3.70042 3.72695 3.85331 4.02277 4.04233 4.07378 4.10820 4.13650 4.25786 4.38965 4.42894 4.43702 4.46680 4.59260 4.64205 4.65322 4.71313 4.74866 4.77119 4.85751 4.92762 4.95149 4.98171 4.99111 5.08972 5.13036 5.17796 5.23115 5.30216 5.34397 5.44152 5.51827 5.70638 5.73717 5.92239 6.18531 6.22468 6.24474 6.61661 6.93065 7.21769 7.51272 8.82586 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.001979 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.514600 B =14147.985777 C =14411.326288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.056 0.944 4 C 0.031 3.969 5 N -0.513 5.513 6 C 0.031 3.969 7 C -0.086 4.086 8 C -0.127 4.127 9 C 0.191 3.809 10 N -0.672 5.672 11 C 0.692 3.308 12 O -0.618 6.618 13 N -0.615 5.615 14 C 0.075 3.925 15 C 0.239 3.761 16 C -0.536 4.536 17 H 0.027 0.973 18 C 0.009 3.991 19 N -0.946 5.946 20 Si 0.949 3.051 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.233 1.233 24 C -0.179 4.179 25 C 0.122 3.878 26 F -0.144 7.144 27 C 0.032 3.968 28 C 0.088 3.912 29 H 0.056 0.944 30 C -0.138 4.138 31 O -0.388 6.388 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.174 0.826 39 H 0.426 0.574 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.268 0.732 46 H 0.115 0.885 47 H 0.062 0.938 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.925 -10.966 23.164 31.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.031 3.969 3 H 0.074 0.926 4 C -0.096 4.096 5 N -0.235 5.235 6 C -0.065 4.065 7 C -0.106 4.106 8 C -0.148 4.148 9 C 0.095 3.905 10 N -0.323 5.323 11 C 0.394 3.606 12 O -0.498 6.498 13 N -0.349 5.349 14 C -0.067 4.067 15 C 0.117 3.883 16 C -0.575 4.575 17 H 0.045 0.955 18 C -0.189 4.189 19 N -0.586 5.586 20 Si 0.771 3.229 21 H -0.205 1.205 22 H -0.201 1.201 23 H -0.155 1.155 24 C -0.201 4.201 25 C 0.101 3.899 26 F -0.123 7.123 27 C -0.094 4.094 28 C 0.030 3.970 29 H 0.075 0.925 30 C -0.196 4.196 31 O -0.308 6.308 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.182 0.818 38 H 0.192 0.808 39 H 0.267 0.733 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.133 0.867 47 H 0.080 0.920 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.087 0.913 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.824 -9.629 23.135 31.342 hybrid contribution 0.787 0.264 -1.218 1.474 sum -18.037 -9.365 21.917 29.890 Atomic orbital electron populations 1.21733 0.90824 1.03532 1.03514 1.22217 0.96174 0.95002 0.83506 0.92554 1.22948 0.85376 1.01383 0.99881 1.59668 1.10417 1.53070 1.00366 1.18664 1.00337 0.93298 0.94161 1.21479 0.99108 0.93074 0.96983 1.21108 0.96177 1.02506 0.94976 1.17456 0.94391 0.91838 0.86814 1.42608 1.67731 1.13330 1.08655 1.16128 0.78535 0.84843 0.81082 1.90886 1.59871 1.14687 1.84332 1.47121 1.68472 1.09595 1.09692 1.21987 1.03124 0.77782 1.03809 1.19307 0.94325 0.91637 0.83080 1.21575 0.95770 1.33115 1.07063 0.95490 1.25875 0.96864 0.94976 1.01201 1.70053 1.17362 1.37692 1.33494 0.85705 0.79336 0.79884 0.77936 1.20537 1.20065 1.15543 1.21162 1.04221 0.97682 0.97044 1.17534 0.98144 0.79581 0.94613 1.91444 1.90766 1.37151 1.92924 1.22947 1.01382 0.96658 0.88459 1.22240 0.80829 0.99062 0.94885 0.92550 1.21732 1.02370 1.00481 0.94968 1.87973 1.21366 1.78409 1.43062 0.91311 0.91175 0.89736 0.91983 0.90031 0.81775 0.80823 0.73265 0.89640 0.90818 0.89769 0.92290 0.96209 0.92303 0.86697 0.92003 0.89693 0.89575 0.91253 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.57 71.98 0.69 -0.95 16 2 C 0.09 1.48 3.43 30.63 0.10 1.59 16 3 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 4 C 0.03 0.54 4.65 86.31 0.40 0.95 16 5 N -0.51 -11.08 4.54 -693.85 -3.15 -14.22 16 6 C 0.03 0.74 4.75 38.15 0.18 0.92 16 7 C -0.09 -1.50 8.62 22.37 0.19 -1.31 16 8 C -0.13 -2.28 9.96 22.38 0.22 -2.06 16 9 C 0.19 5.34 6.30 38.09 0.24 5.58 16 10 N -0.67 -19.13 5.22 -317.03 -1.66 -20.79 16 11 C 0.69 28.12 8.12 179.06 1.45 29.58 16 12 O -0.62 -31.67 13.36 -4.02 -0.05 -31.72 16 13 N -0.61 -24.08 2.86 -869.32 -2.48 -26.56 16 14 C 0.07 1.90 10.24 127.77 1.31 3.21 16 15 C 0.24 11.42 4.23 85.63 0.36 11.78 16 16 C -0.54 -31.44 9.94 25.60 0.25 -31.19 16 17 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 18 C 0.01 0.52 5.47 84.65 0.46 0.98 16 19 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 20 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 H -0.23 -9.53 6.54 99.48 0.65 -8.88 16 24 C -0.18 -6.33 8.67 22.41 0.19 -6.13 16 25 C 0.12 3.91 7.31 22.47 0.16 4.07 16 26 F -0.14 -5.20 17.07 44.97 0.77 -4.44 16 27 C 0.03 0.54 4.69 86.31 0.40 0.95 16 28 C 0.09 1.42 3.42 30.63 0.10 1.53 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 C -0.14 -1.54 9.57 71.98 0.69 -0.85 16 31 O -0.39 -7.06 10.11 -148.98 -1.51 -8.57 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.93 7.22 -2.39 -0.02 0.91 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.16 1.81 7.04 -2.91 -0.02 1.79 16 38 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.43 8.20 6.52 -92.70 -0.60 7.59 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 42 H 0.08 1.58 6.30 -2.39 -0.02 1.57 16 43 H 0.06 2.52 7.13 -2.38 -0.02 2.50 16 44 H 0.02 1.02 6.85 -2.39 -0.02 1.01 16 45 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.12 5.15 6.22 -2.91 -0.02 5.13 16 47 H 0.06 0.89 7.41 -2.39 -0.02 0.87 16 48 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -83.31 411.02 1.82 -81.49 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.29 Total: 19.85 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 7.43 Total: 18.65 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -6.99 Total: -121.44 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.56 Total: -40.29 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.77 Total: -4.44 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -83.31 1.82 -81.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075572828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.311 kcal (2) G-P(sol) polarization free energy of solvation -83.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.91 seconds