Wall clock time and date at job start Tue Mar 31 2020 07:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50958 * 2 1 4 4 C 1.53093 * 109.51051 * 120.09174 * 2 1 3 5 5 N 1.47017 * 109.25764 * 63.08547 * 4 2 1 6 6 C 1.40085 * 111.00159 * 182.39598 * 5 4 2 7 7 C 1.38808 * 120.00923 * 299.99794 * 6 5 4 8 8 C 1.38122 * 120.01597 * 179.97438 * 7 6 5 9 9 C 1.38828 * 120.04272 * 0.02562 * 8 7 6 10 10 N 1.40193 * 119.98679 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99842 * 324.88641 * 10 9 8 12 12 O 1.21589 * 120.00588 * 4.58388 * 11 10 9 13 13 N 1.34780 * 119.99681 * 184.58877 * 11 10 9 14 14 C 1.46500 * 120.00077 * 359.97438 * 13 11 10 15 15 C 1.46503 * 120.00146 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46982 * 89.99761 * 15 13 11 17 17 H 1.07999 * 119.99937 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00143 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99712 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00195 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47477 * 89.99591 * 20 18 16 22 22 H 1.48499 * 109.47209 * 209.99690 * 20 18 16 23 23 H 1.48503 * 109.46837 * 329.99575 * 20 18 16 24 24 C 1.38835 * 120.02534 * 359.97438 * 9 8 7 25 25 C 1.38247 * 119.97839 * 0.30214 * 24 9 8 26 26 F 1.35093 * 120.01786 * 179.72672 * 25 24 9 27 27 C 1.47014 * 110.75658 * 58.61950 * 5 4 2 28 28 C 1.53104 * 109.25368 * 301.38739 * 27 5 4 29 29 H 1.08998 * 109.53894 * 296.88631 * 28 27 5 30 30 C 1.53001 * 109.50709 * 176.78437 * 28 27 5 31 31 O 1.43017 * 109.26328 * 56.84285 * 28 27 5 32 32 H 1.08995 * 109.46612 * 299.90541 * 1 2 3 33 33 H 1.08991 * 109.47289 * 59.91265 * 1 2 3 34 34 H 1.09002 * 109.47088 * 179.91156 * 1 2 3 35 35 H 1.09005 * 109.50601 * 303.15386 * 4 2 1 36 36 H 1.08996 * 109.51044 * 183.01989 * 4 2 1 37 37 H 1.07994 * 119.99009 * 0.02562 * 7 6 5 38 38 H 1.08003 * 119.97591 * 180.02562 * 8 7 6 39 39 H 0.97001 * 119.99568 * 144.88572 * 10 9 8 40 40 H 1.09005 * 109.46750 * 90.00241 * 14 13 11 41 41 H 1.08994 * 109.47161 * 210.00020 * 14 13 11 42 42 H 1.09002 * 109.47509 * 330.00486 * 14 13 11 43 43 H 1.08995 * 109.47264 * 210.00020 * 15 13 11 44 44 H 1.09000 * 109.46937 * 330.00079 * 15 13 11 45 45 H 0.97004 * 120.00002 * 180.02562 * 19 18 16 46 46 H 1.07994 * 120.01088 * 180.02562 * 24 9 8 47 47 H 1.08996 * 109.50607 * 61.31304 * 27 5 4 48 48 H 1.08989 * 109.51125 * 181.44949 * 27 5 4 49 49 H 1.09002 * 109.46904 * 300.21348 * 30 28 27 50 50 H 1.08998 * 109.46929 * 60.21294 * 30 28 27 51 51 H 1.08998 * 109.46928 * 180.21382 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7235 1.2485 5 7 1.6111 -2.1286 1.2050 6 6 2.0141 -2.8131 2.3590 7 6 3.3625 -2.9090 2.6739 8 6 3.7600 -3.5833 3.8119 9 6 2.8115 -4.1661 4.6414 10 7 3.2162 -4.8508 5.7959 11 6 4.3648 -5.5559 5.7933 12 8 5.0914 -5.5311 4.8188 13 7 4.7079 -6.2889 6.8711 14 6 3.8327 -6.3186 8.0456 15 6 5.9561 -7.0559 6.8682 16 6 7.0727 -6.2002 7.4086 17 1 6.8726 -5.1866 7.7232 18 6 8.3499 -6.7113 7.5015 19 7 8.5935 -7.9458 7.1189 20 14 9.7338 -5.6510 8.1720 21 1 9.8237 -5.8267 9.6438 22 1 11.0173 -6.0580 7.5457 23 1 9.4608 -4.2251 7.8595 24 6 1.4623 -4.0712 4.3281 25 6 1.0638 -3.4014 3.1862 26 9 -0.2485 -3.3134 2.8777 27 6 2.1186 -2.7917 -0.0050 28 6 1.6066 -2.0473 -1.2410 29 1 0.5188 -2.1069 -1.2779 30 6 2.1959 -2.6839 -2.5013 31 8 2.0075 -0.6766 -1.1661 32 1 -0.3632 0.5124 0.8908 33 1 -0.3633 0.5151 -0.8891 34 1 -0.3633 -1.0277 -0.0016 35 1 1.6332 -0.2453 2.1391 36 1 3.1299 -0.6769 1.2761 37 1 4.1010 -2.4556 2.0294 38 1 4.8093 -3.6572 4.0566 39 1 2.6696 -4.8169 6.5965 40 1 3.1176 -7.1351 7.9452 41 1 4.4332 -6.4698 8.9425 42 1 3.2960 -5.3730 8.1229 43 1 5.8404 -7.9405 7.4945 44 1 6.1927 -7.3608 5.8488 45 1 9.4919 -8.3056 7.1845 46 1 0.7246 -4.5243 4.9737 47 1 3.2084 -2.7781 0.0025 48 1 1.7670 -3.8230 -0.0296 49 1 3.2837 -2.6255 -2.4632 50 1 1.8899 -3.7285 -2.5579 51 1 1.8340 -2.1511 -3.3807 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075572829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:40 Heat of formation + Delta-G solvation = -67.620291 kcal Electronic energy + Delta-G solvation = -33466.523804 eV Core-core repulsion = 28895.290813 eV Total energy + Delta-G solvation = -4571.232991 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.190 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -48.78323 -40.78328 -40.12394 -38.48094 -36.19763 -34.93508 -33.88543 -33.67071 -32.54878 -30.74861 -30.52452 -28.68610 -27.66162 -27.17483 -25.98294 -24.87807 -23.22635 -23.04905 -22.84408 -21.50894 -19.69534 -19.59803 -18.26976 -17.47194 -17.26361 -16.77011 -16.61248 -16.24406 -15.88815 -15.65485 -15.40687 -15.18798 -14.90528 -14.82337 -14.74600 -14.56402 -14.13365 -13.97052 -13.40950 -13.28905 -13.18650 -12.86345 -12.70473 -12.56488 -12.48353 -12.25312 -12.20997 -12.15174 -12.00268 -11.94800 -11.68421 -11.58729 -11.36301 -11.26186 -10.97083 -10.64090 -10.58957 -10.22538 -10.06074 -9.86336 -9.72546 -9.40802 -8.84071 -8.74276 -8.49127 -8.09426 -7.69860 -6.09852 -4.15002 1.04916 1.20468 2.96301 3.26220 3.33333 3.34227 3.37169 3.40306 3.50003 3.84147 4.23590 4.35585 4.45643 4.49279 4.54568 4.73164 4.75990 4.78685 4.87282 5.07131 5.11683 5.15854 5.19993 5.23189 5.24370 5.32269 5.35184 5.42421 5.45344 5.48236 5.61248 5.64186 5.68146 5.76203 5.78067 5.85819 5.96863 6.04790 6.05177 6.23306 6.34883 6.48963 6.55015 6.69127 6.83498 6.94734 7.18939 7.25609 7.39546 7.55078 7.87032 8.15760 8.43698 8.84935 9.09382 9.50425 10.98049 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.002105 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.773609 B =13297.668848 C =14252.603529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.091 3.909 3 H 0.106 0.894 4 C 0.027 3.973 5 N -0.489 5.489 6 C 0.018 3.982 7 C -0.098 4.098 8 C -0.120 4.120 9 C 0.213 3.787 10 N -0.696 5.696 11 C 0.698 3.302 12 O -0.566 6.566 13 N -0.610 5.610 14 C 0.083 3.917 15 C 0.259 3.741 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.191 4.191 25 C 0.145 3.855 26 F -0.130 7.130 27 C 0.027 3.973 28 C 0.087 3.913 29 H 0.071 0.929 30 C -0.145 4.145 31 O -0.377 6.377 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.404 0.596 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.264 0.736 46 H 0.139 0.861 47 H 0.050 0.950 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.799 12.574 -10.849 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.033 3.967 3 H 0.124 0.876 4 C -0.100 4.100 5 N -0.210 5.210 6 C -0.078 4.078 7 C -0.118 4.118 8 C -0.142 4.142 9 C 0.115 3.885 10 N -0.345 5.345 11 C 0.400 3.600 12 O -0.442 6.442 13 N -0.345 5.345 14 C -0.062 4.062 15 C 0.140 3.860 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.213 4.213 25 C 0.124 3.876 26 F -0.108 7.108 27 C -0.100 4.100 28 C 0.030 3.970 29 H 0.088 0.912 30 C -0.203 4.203 31 O -0.296 6.296 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.147 0.853 38 H 0.171 0.829 39 H 0.241 0.759 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.156 0.844 47 H 0.068 0.932 48 H 0.105 0.895 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.485 12.424 -11.669 25.144 hybrid contribution 1.028 0.366 1.244 1.655 sum -17.458 12.790 -10.425 24.021 Atomic orbital electron populations 1.22286 0.95449 1.03594 1.01993 1.22258 0.94492 0.95850 0.84078 0.87612 1.22887 0.99173 0.88289 0.99665 1.59764 1.59442 1.01656 1.00161 1.18586 0.91400 1.03154 0.94647 1.21359 0.94814 0.98437 0.97210 1.21431 1.01657 0.96264 0.94811 1.17276 0.91434 0.91747 0.88018 1.43069 1.25633 1.52270 1.13554 1.15903 0.80533 0.79177 0.84425 1.90895 1.51743 1.67471 1.34051 1.47529 1.24825 1.49095 1.13024 1.21620 0.94452 0.99681 0.90418 1.19287 0.77562 0.90084 0.99077 1.21428 0.93241 0.99482 1.42579 0.92468 1.24931 0.98584 0.95144 0.95418 1.69928 1.21609 1.14443 1.47284 0.86488 0.81403 0.80657 0.78812 1.20632 1.21046 1.19919 1.20692 0.95665 1.06226 0.98744 1.17009 0.77519 0.99072 0.94006 1.91478 1.32197 1.94382 1.92769 1.22931 0.98829 0.99057 0.89140 1.22169 0.99118 0.81646 0.94116 0.91153 1.21755 1.01982 1.00382 0.96160 1.88042 1.75594 1.23171 1.42832 0.91674 0.92401 0.90889 0.89407 0.93241 0.85313 0.82947 0.75859 0.93475 0.90116 0.93134 0.94645 0.93588 0.92638 0.84359 0.93158 0.89457 0.91739 0.90828 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.89 37.16 0.33 -1.08 16 2 C 0.09 0.80 3.92 -26.68 -0.10 0.69 16 3 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.03 0.26 4.78 -3.71 -0.02 0.24 16 5 N -0.49 -5.39 3.91 -170.66 -0.67 -6.06 16 6 C 0.02 0.22 4.75 -83.57 -0.40 -0.18 16 7 C -0.10 -1.28 8.62 -39.41 -0.34 -1.62 16 8 C -0.12 -1.87 8.69 -39.41 -0.34 -2.21 16 9 C 0.21 3.11 6.30 -83.59 -0.53 2.58 16 10 N -0.70 -10.53 5.22 -14.18 -0.07 -10.60 16 11 C 0.70 14.12 8.12 -86.92 -0.71 13.41 16 12 O -0.57 -13.71 13.36 5.29 0.07 -13.64 16 13 N -0.61 -12.39 2.86 -188.74 -0.54 -12.93 16 14 C 0.08 1.20 10.24 59.85 0.61 1.81 16 15 C 0.26 6.56 5.16 -5.19 -0.03 6.53 16 16 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 17 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 20 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.19 -2.37 9.94 -39.36 -0.39 -2.76 16 25 C 0.14 1.85 7.31 -39.27 -0.29 1.56 16 26 F -0.13 -1.68 17.07 2.25 0.04 -1.65 16 27 C 0.03 0.28 4.69 -3.71 -0.02 0.26 16 28 C 0.09 0.81 3.02 -26.68 -0.08 0.73 16 29 H 0.07 0.64 6.49 -51.93 -0.34 0.31 16 30 C -0.15 -1.11 9.57 37.16 0.36 -0.75 16 31 O -0.38 -3.92 10.28 -35.23 -0.36 -4.28 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.68 6.12 -51.93 -0.32 0.36 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.50 7.22 -51.93 -0.37 0.12 16 37 H 0.13 1.54 7.04 -52.49 -0.37 1.17 16 38 H 0.15 2.79 6.22 -52.48 -0.33 2.46 16 39 H 0.40 4.72 6.52 -40.82 -0.27 4.46 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.05 0.57 6.30 -51.93 -0.33 0.24 16 43 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 44 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.05 0.55 7.41 -51.93 -0.38 0.16 16 48 H 0.09 0.90 8.14 -51.94 -0.42 0.48 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 410.03 15.07 6.18 6.18 Total: -1.00 -32.58 410.03 -9.70 -42.28 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.70 Total: 3.60 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -2.36 Total: 5.97 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.54 Total: -54.90 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.29 Total: -17.92 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.58 -9.70 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075572829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.339 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds