Wall clock time and date at job start Tue Mar 31 2020 07:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50958 * 2 1 4 4 C 1.53093 * 109.51051 * 120.09174 * 2 1 3 5 5 N 1.47017 * 109.25764 * 63.08547 * 4 2 1 6 6 C 1.40085 * 111.00159 * 182.39598 * 5 4 2 7 7 C 1.38808 * 120.00923 * 299.99794 * 6 5 4 8 8 C 1.38122 * 120.01597 * 179.97438 * 7 6 5 9 9 C 1.38828 * 120.04272 * 0.02562 * 8 7 6 10 10 N 1.40193 * 119.98679 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99842 * 324.88641 * 10 9 8 12 12 O 1.21589 * 120.00588 * 4.58388 * 11 10 9 13 13 N 1.34780 * 119.99681 * 184.58877 * 11 10 9 14 14 C 1.46500 * 120.00077 * 359.97438 * 13 11 10 15 15 C 1.46503 * 120.00146 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46982 * 89.99761 * 15 13 11 17 17 H 1.07999 * 119.99937 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00143 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99712 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00195 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47477 * 89.99591 * 20 18 16 22 22 H 1.48499 * 109.47209 * 209.99690 * 20 18 16 23 23 H 1.48503 * 109.46837 * 329.99575 * 20 18 16 24 24 C 1.38835 * 120.02534 * 359.97438 * 9 8 7 25 25 C 1.38247 * 119.97839 * 0.30214 * 24 9 8 26 26 F 1.35093 * 120.01786 * 179.72672 * 25 24 9 27 27 C 1.47014 * 110.75658 * 58.61950 * 5 4 2 28 28 C 1.53104 * 109.25368 * 301.38739 * 27 5 4 29 29 H 1.08998 * 109.53894 * 296.88631 * 28 27 5 30 30 C 1.53001 * 109.50709 * 176.78437 * 28 27 5 31 31 O 1.43017 * 109.26328 * 56.84285 * 28 27 5 32 32 H 1.08995 * 109.46612 * 299.90541 * 1 2 3 33 33 H 1.08991 * 109.47289 * 59.91265 * 1 2 3 34 34 H 1.09002 * 109.47088 * 179.91156 * 1 2 3 35 35 H 1.09005 * 109.50601 * 303.15386 * 4 2 1 36 36 H 1.08996 * 109.51044 * 183.01989 * 4 2 1 37 37 H 1.07994 * 119.99009 * 0.02562 * 7 6 5 38 38 H 1.08003 * 119.97591 * 180.02562 * 8 7 6 39 39 H 0.97001 * 119.99568 * 144.88572 * 10 9 8 40 40 H 1.09005 * 109.46750 * 90.00241 * 14 13 11 41 41 H 1.08994 * 109.47161 * 210.00020 * 14 13 11 42 42 H 1.09002 * 109.47509 * 330.00486 * 14 13 11 43 43 H 1.08995 * 109.47264 * 210.00020 * 15 13 11 44 44 H 1.09000 * 109.46937 * 330.00079 * 15 13 11 45 45 H 0.97004 * 120.00002 * 180.02562 * 19 18 16 46 46 H 1.07994 * 120.01088 * 180.02562 * 24 9 8 47 47 H 1.08996 * 109.50607 * 61.31304 * 27 5 4 48 48 H 1.08989 * 109.51125 * 181.44949 * 27 5 4 49 49 H 1.09002 * 109.46904 * 300.21348 * 30 28 27 50 50 H 1.08998 * 109.46929 * 60.21294 * 30 28 27 51 51 H 1.08998 * 109.46928 * 180.21382 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7235 1.2485 5 7 1.6111 -2.1286 1.2050 6 6 2.0141 -2.8131 2.3590 7 6 3.3625 -2.9090 2.6739 8 6 3.7600 -3.5833 3.8119 9 6 2.8115 -4.1661 4.6414 10 7 3.2162 -4.8508 5.7959 11 6 4.3648 -5.5559 5.7933 12 8 5.0914 -5.5311 4.8188 13 7 4.7079 -6.2889 6.8711 14 6 3.8327 -6.3186 8.0456 15 6 5.9561 -7.0559 6.8682 16 6 7.0727 -6.2002 7.4086 17 1 6.8726 -5.1866 7.7232 18 6 8.3499 -6.7113 7.5015 19 7 8.5935 -7.9458 7.1189 20 14 9.7338 -5.6510 8.1720 21 1 9.8237 -5.8267 9.6438 22 1 11.0173 -6.0580 7.5457 23 1 9.4608 -4.2251 7.8595 24 6 1.4623 -4.0712 4.3281 25 6 1.0638 -3.4014 3.1862 26 9 -0.2485 -3.3134 2.8777 27 6 2.1186 -2.7917 -0.0050 28 6 1.6066 -2.0473 -1.2410 29 1 0.5188 -2.1069 -1.2779 30 6 2.1959 -2.6839 -2.5013 31 8 2.0075 -0.6766 -1.1661 32 1 -0.3632 0.5124 0.8908 33 1 -0.3633 0.5151 -0.8891 34 1 -0.3633 -1.0277 -0.0016 35 1 1.6332 -0.2453 2.1391 36 1 3.1299 -0.6769 1.2761 37 1 4.1010 -2.4556 2.0294 38 1 4.8093 -3.6572 4.0566 39 1 2.6696 -4.8169 6.5965 40 1 3.1176 -7.1351 7.9452 41 1 4.4332 -6.4698 8.9425 42 1 3.2960 -5.3730 8.1229 43 1 5.8404 -7.9405 7.4945 44 1 6.1927 -7.3608 5.8488 45 1 9.4919 -8.3056 7.1845 46 1 0.7246 -4.5243 4.9737 47 1 3.2084 -2.7781 0.0025 48 1 1.7670 -3.8230 -0.0296 49 1 3.2837 -2.6255 -2.4632 50 1 1.8899 -3.7285 -2.5579 51 1 1.8340 -2.1511 -3.3807 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075572829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:32 Heat of formation + Delta-G solvation = -87.689303 kcal Electronic energy + Delta-G solvation = -33467.394062 eV Core-core repulsion = 28895.290813 eV Total energy + Delta-G solvation = -4572.103249 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.190 amu Computer time = 6.10 seconds Orbital eigenvalues (eV) -49.81716 -41.87882 -41.27665 -39.62157 -37.30838 -36.55707 -35.25942 -34.45662 -34.36916 -31.74365 -31.44012 -30.07669 -29.11253 -27.90257 -27.40142 -26.00156 -24.84718 -24.11955 -23.69550 -22.68134 -21.06439 -20.44404 -19.53738 -18.74079 -18.68359 -18.26579 -17.53506 -17.36623 -17.11037 -16.78974 -16.58575 -16.31929 -16.29932 -16.03891 -15.66570 -15.63122 -15.40390 -14.93082 -14.88539 -14.63184 -14.22289 -13.99173 -13.87343 -13.71620 -13.50378 -13.41224 -13.29684 -13.14864 -13.08960 -12.87591 -12.82738 -12.75180 -12.62284 -12.52153 -12.41254 -12.20436 -12.09719 -11.74179 -11.34068 -11.32167 -11.01048 -10.63998 -10.63505 -9.92230 -9.64756 -9.58042 -9.07197 -8.22086 -6.36701 -0.03976 0.11726 1.36695 1.39445 1.48859 1.59569 2.04574 2.37361 2.48877 2.55236 2.77645 2.95262 3.07906 3.28435 3.68962 3.75256 3.82108 4.01528 4.03524 4.07389 4.10967 4.16874 4.27743 4.35121 4.38745 4.41502 4.42555 4.62532 4.62905 4.67467 4.67701 4.76196 4.82623 4.93639 4.96806 4.97775 5.02045 5.08248 5.14663 5.20833 5.23373 5.25450 5.36687 5.40425 5.53215 5.68914 5.71451 5.75791 6.01731 6.05113 6.16436 6.23265 6.71898 6.98640 7.30011 7.56358 8.84401 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.002105 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.773609 B =13297.668848 C =14252.603529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 H 0.123 0.877 4 C 0.026 3.974 5 N -0.490 5.490 6 C 0.028 3.972 7 C -0.095 4.095 8 C -0.137 4.137 9 C 0.194 3.806 10 N -0.674 5.674 11 C 0.694 3.306 12 O -0.616 6.616 13 N -0.618 5.618 14 C 0.076 3.924 15 C 0.275 3.725 16 C -0.541 4.541 17 H 0.053 0.947 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.282 1.282 23 H -0.274 1.274 24 C -0.169 4.169 25 C 0.141 3.859 26 F -0.127 7.127 27 C 0.027 3.973 28 C 0.090 3.910 29 H 0.074 0.926 30 C -0.143 4.143 31 O -0.391 6.391 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.043 0.957 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.423 0.577 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.031 0.969 44 H 0.001 0.999 45 H 0.267 0.733 46 H 0.169 0.831 47 H 0.041 0.959 48 H 0.086 0.914 49 H 0.057 0.943 50 H 0.085 0.915 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.808 14.102 -10.344 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.141 0.859 4 C -0.101 4.101 5 N -0.212 5.212 6 C -0.068 4.068 7 C -0.115 4.115 8 C -0.159 4.159 9 C 0.097 3.903 10 N -0.325 5.325 11 C 0.396 3.604 12 O -0.495 6.495 13 N -0.352 5.352 14 C -0.066 4.066 15 C 0.154 3.846 16 C -0.580 4.580 17 H 0.071 0.929 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.791 3.209 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.191 4.191 25 C 0.120 3.880 26 F -0.106 7.106 27 C -0.100 4.100 28 C 0.032 3.968 29 H 0.092 0.908 30 C -0.200 4.200 31 O -0.311 6.311 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.264 0.736 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.049 0.951 44 H 0.019 0.981 45 H 0.076 0.924 46 H 0.186 0.814 47 H 0.059 0.941 48 H 0.104 0.896 49 H 0.076 0.924 50 H 0.104 0.896 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.574 13.980 -11.129 27.251 hybrid contribution 1.559 -0.070 1.009 1.858 sum -19.016 13.911 -10.120 25.642 Atomic orbital electron populations 1.22223 0.94722 1.02934 1.02784 1.22409 0.95049 0.96328 0.83043 0.85943 1.22961 0.98927 0.87555 1.00664 1.59881 1.59297 1.02264 0.99751 1.18693 0.90926 1.02295 0.94891 1.21331 0.95510 0.98162 0.96524 1.21241 1.00339 0.97950 0.96322 1.17343 0.92214 0.92621 0.88090 1.42631 1.24088 1.51137 1.14653 1.16055 0.81390 0.79311 0.83642 1.90866 1.53706 1.69057 1.35920 1.47375 1.24206 1.48644 1.15002 1.21933 0.94049 1.02855 0.87760 1.18728 0.79639 0.90326 0.95952 1.21693 0.94338 0.99435 1.42515 0.92920 1.25818 1.01188 0.96399 0.95649 1.70043 1.22333 1.16052 1.48267 0.85438 0.78005 0.78571 0.78919 1.18818 1.20766 1.19925 1.20811 0.94915 1.04814 0.98556 1.17076 0.77604 0.99128 0.94170 1.91490 1.31961 1.94361 1.92756 1.22966 0.98283 0.99272 0.89478 1.22214 0.99307 0.81240 0.94054 0.90819 1.21767 1.01479 1.01137 0.95653 1.88033 1.75971 1.23623 1.43466 0.90775 0.91727 0.92187 0.88715 0.93836 0.84774 0.86379 0.73613 0.90807 0.90711 0.89406 0.95143 0.98098 0.92399 0.81365 0.94087 0.89552 0.92401 0.89587 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 8.89 71.98 0.64 -1.75 16 2 C 0.09 1.41 3.92 30.63 0.12 1.53 16 3 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 4 C 0.03 0.46 4.78 86.31 0.41 0.88 16 5 N -0.49 -10.25 3.91 -693.86 -2.71 -12.96 16 6 C 0.03 0.66 4.75 38.15 0.18 0.84 16 7 C -0.09 -2.51 8.62 22.38 0.19 -2.31 16 8 C -0.14 -4.37 8.69 22.38 0.19 -4.18 16 9 C 0.19 5.51 6.30 38.09 0.24 5.75 16 10 N -0.67 -19.69 5.22 -317.03 -1.66 -21.35 16 11 C 0.69 28.56 8.12 179.05 1.45 30.02 16 12 O -0.62 -31.42 13.36 -4.00 -0.05 -31.47 16 13 N -0.62 -25.30 2.86 -869.30 -2.48 -27.79 16 14 C 0.08 2.07 10.24 127.77 1.31 3.38 16 15 C 0.28 14.47 5.16 85.63 0.44 14.91 16 16 C -0.54 -30.54 9.39 25.60 0.24 -30.30 16 17 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 18 C 0.01 0.49 5.46 84.65 0.46 0.95 16 19 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 20 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 C -0.17 -3.79 9.94 22.42 0.22 -3.57 16 25 C 0.14 3.32 7.31 22.47 0.16 3.49 16 26 F -0.13 -2.98 17.07 44.97 0.77 -2.21 16 27 C 0.03 0.54 4.69 86.32 0.40 0.94 16 28 C 0.09 1.56 3.02 30.63 0.09 1.65 16 29 H 0.07 1.24 6.49 -2.39 -0.02 1.23 16 30 C -0.14 -2.02 9.57 71.98 0.69 -1.33 16 31 O -0.39 -7.63 10.28 -148.98 -1.53 -9.16 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.01 6.12 -2.39 -0.01 1.00 16 35 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.04 0.84 7.22 -2.39 -0.02 0.83 16 37 H 0.13 3.32 7.04 -2.91 -0.02 3.29 16 38 H 0.12 4.65 6.22 -2.91 -0.02 4.63 16 39 H 0.42 8.75 6.52 -92.71 -0.60 8.14 16 40 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 42 H 0.09 1.71 6.30 -2.39 -0.02 1.69 16 43 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 44 H 0.00 0.05 7.42 -2.39 -0.02 0.04 16 45 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 47 H 0.04 0.90 7.41 -2.39 -0.02 0.88 16 48 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 51 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.45 410.03 2.46 -71.00 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.35 Total: 21.67 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 7.46 Total: 20.90 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -6.57 Total: -117.11 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.59 Total: -40.63 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.77 Total: -2.21 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -73.45 2.46 -71.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075572829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.694 kcal (2) G-P(sol) polarization free energy of solvation -73.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.10 seconds