Wall clock time and date at job start Tue Mar 31 2020 07:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.50783 * 2 1 4 4 C 1.53103 * 109.50867 * 239.91278 * 2 1 3 5 5 N 1.47011 * 109.25844 * 183.21688 * 4 2 1 6 6 C 1.40089 * 110.99986 * 182.39362 * 5 4 2 7 7 C 1.38800 * 120.01125 * 299.99973 * 6 5 4 8 8 C 1.38123 * 120.01943 * 180.30081 * 7 6 5 9 9 C 1.38837 * 120.03586 * 359.44676 * 8 7 6 10 10 N 1.40185 * 119.98199 * 180.28115 * 9 8 7 11 11 C 1.34776 * 119.99974 * 145.18371 * 10 9 8 12 12 O 1.21595 * 120.00250 * 4.57755 * 11 10 9 13 13 N 1.34782 * 120.00345 * 184.58469 * 11 10 9 14 14 C 1.46497 * 119.99452 * 359.97438 * 13 11 10 15 15 C 1.46495 * 120.00286 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.47222 * 89.99704 * 15 13 11 17 17 H 1.08000 * 119.99706 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00072 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00232 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00054 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47141 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47328 * 120.00076 * 20 18 16 23 23 H 1.48504 * 109.46899 * 240.00146 * 20 18 16 24 24 C 1.38829 * 120.02662 * 0.55420 * 9 8 7 25 25 C 1.38247 * 119.97776 * 359.72281 * 24 9 8 26 26 F 1.35099 * 120.01521 * 179.97438 * 25 24 9 27 27 C 1.47017 * 110.75415 * 58.61458 * 5 4 2 28 28 C 1.53088 * 109.25674 * 301.38656 * 27 5 4 29 29 H 1.09008 * 109.54354 * 176.80669 * 28 27 5 30 30 C 1.53004 * 109.50937 * 296.90825 * 28 27 5 31 31 O 1.43015 * 109.26560 * 56.84791 * 28 27 5 32 32 H 1.08997 * 109.46948 * 180.08198 * 1 2 3 33 33 H 1.08996 * 109.47409 * 300.08780 * 1 2 3 34 34 H 1.09010 * 109.46732 * 60.09010 * 1 2 3 35 35 H 1.08997 * 109.50694 * 63.28086 * 4 2 1 36 36 H 1.08996 * 109.54109 * 303.17488 * 4 2 1 37 37 H 1.07997 * 119.98739 * 0.02562 * 7 6 5 38 38 H 1.07996 * 119.97913 * 179.70393 * 8 7 6 39 39 H 0.97001 * 120.00902 * 325.17702 * 10 9 8 40 40 H 1.09000 * 109.46960 * 90.00537 * 14 13 11 41 41 H 1.09006 * 109.47275 * 210.00186 * 14 13 11 42 42 H 1.08998 * 109.47767 * 330.00157 * 14 13 11 43 43 H 1.08995 * 109.47162 * 209.99638 * 15 13 11 44 44 H 1.09006 * 109.47122 * 329.99875 * 15 13 11 45 45 H 0.96998 * 120.00029 * 179.97438 * 19 18 16 46 46 H 1.07999 * 120.01291 * 179.75315 * 24 9 8 47 47 H 1.09006 * 109.49983 * 61.31831 * 27 5 4 48 48 H 1.09002 * 109.50555 * 181.44528 * 27 5 4 49 49 H 1.08997 * 109.47219 * 179.78510 * 30 28 27 50 50 H 1.09001 * 109.47069 * 299.78981 * 30 28 27 51 51 H 1.08997 * 109.46862 * 59.78343 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2487 5 7 3.5093 -0.7880 -1.2047 6 6 4.0199 -1.3964 -2.3587 7 6 3.6594 -2.6991 -2.6742 8 6 4.1675 -3.3012 -3.8087 9 6 5.0302 -2.6002 -4.6404 10 7 5.5407 -3.2104 -5.7947 11 6 5.7516 -2.4787 -6.9067 12 8 5.5786 -1.2753 -6.8846 13 7 6.1543 -3.0807 -8.0433 14 6 6.3632 -4.5305 -8.0698 15 6 6.3831 -2.2854 -9.2521 16 6 7.8174 -1.8242 -9.2861 17 1 8.4911 -2.0960 -8.4869 18 6 8.2694 -1.0545 -10.3369 19 7 7.4490 -0.7231 -11.3099 20 14 10.0471 -0.4822 -10.3786 21 1 10.7573 -0.9850 -9.1753 22 1 10.7080 -1.0083 -11.5999 23 1 10.0890 1.0021 -10.3934 24 6 5.3920 -1.2971 -4.3265 25 6 4.8884 -0.6955 -3.1882 26 9 5.2403 0.5723 -2.8818 27 6 3.9640 -1.4884 0.0053 28 6 3.4334 -0.7573 1.2413 29 1 3.7201 -1.3043 2.1395 30 6 4.0229 0.6537 1.2926 31 8 2.0075 -0.6767 1.1660 32 1 -0.3633 -1.0276 0.0015 33 1 -0.3634 0.5152 0.8891 34 1 -0.3633 0.5125 -0.8909 35 1 1.7274 -0.1787 -2.1391 36 1 1.6332 -1.7338 -1.2774 37 1 2.9848 -3.2435 -2.0301 38 1 3.8904 -4.3165 -4.0510 39 1 5.7422 -4.1592 -5.7931 40 1 5.4343 -5.0263 -8.3518 41 1 7.1392 -4.7726 -8.7961 42 1 6.6716 -4.8714 -7.0815 43 1 6.1764 -2.8943 -10.1322 44 1 5.7227 -1.4182 -9.2470 45 1 7.7669 -0.1813 -12.0489 46 1 6.0662 -0.7533 -4.9716 47 1 3.5866 -2.5110 -0.0027 48 1 5.0536 -1.5020 0.0301 49 1 3.6418 1.1750 2.1707 50 1 5.1096 0.5916 1.3500 51 1 3.7373 1.1997 0.3935 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075572830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:42 Heat of formation + Delta-G solvation = -88.716404 kcal Electronic energy + Delta-G solvation = -33496.412308 eV Core-core repulsion = 28924.264520 eV Total energy + Delta-G solvation = -4572.147788 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.190 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -49.83369 -41.85604 -41.27122 -39.61167 -37.29624 -36.55247 -35.25698 -34.45818 -34.34930 -31.68473 -31.45666 -30.08076 -29.10239 -27.87561 -27.39853 -26.05347 -24.80641 -24.09182 -23.67378 -22.56801 -21.20026 -20.34590 -19.60749 -18.72812 -18.63653 -18.24114 -17.51182 -17.38588 -17.13347 -16.76237 -16.53069 -16.45091 -16.29855 -16.00661 -15.62708 -15.56160 -15.37986 -14.96195 -14.86411 -14.60721 -14.32212 -13.95135 -13.85129 -13.57099 -13.52212 -13.32715 -13.27653 -13.19461 -13.07055 -12.86695 -12.84331 -12.78333 -12.70076 -12.54289 -12.38849 -12.21883 -12.07565 -11.72189 -11.32051 -11.30239 -11.02721 -10.65800 -10.61455 -9.88571 -9.58272 -9.55845 -9.06283 -8.23428 -6.37950 -0.00932 0.14763 1.34740 1.37799 1.48343 1.62039 2.05346 2.36390 2.51239 2.57045 2.79251 2.95579 3.06489 3.31690 3.72096 3.78077 3.86026 4.02611 4.06214 4.09733 4.14670 4.17998 4.28285 4.40956 4.42924 4.46152 4.49324 4.64021 4.67602 4.70769 4.72319 4.77831 4.81535 4.95306 4.96558 4.98222 5.03332 5.08493 5.13444 5.19036 5.23148 5.26904 5.36012 5.39614 5.52594 5.72802 5.75801 5.79405 6.02306 6.04139 6.21754 6.24078 6.70936 6.99649 7.28943 7.56829 8.83232 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.002033 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.309550 B =13767.847668 C =14380.406599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.087 3.913 3 H 0.061 0.939 4 C 0.030 3.970 5 N -0.505 5.505 6 C 0.031 3.969 7 C -0.087 4.087 8 C -0.129 4.129 9 C 0.191 3.809 10 N -0.672 5.672 11 C 0.691 3.309 12 O -0.620 6.620 13 N -0.618 5.618 14 C 0.076 3.924 15 C 0.275 3.725 16 C -0.541 4.541 17 H 0.052 0.948 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.267 1.267 23 H -0.284 1.284 24 C -0.179 4.179 25 C 0.124 3.876 26 F -0.143 7.143 27 C 0.030 3.970 28 C 0.091 3.909 29 H 0.128 0.872 30 C -0.173 4.173 31 O -0.386 6.386 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.425 0.575 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.032 0.968 44 H -0.001 1.001 45 H 0.267 0.733 46 H 0.116 0.884 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.063 0.937 50 H 0.068 0.932 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.657 -9.745 25.968 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.029 3.971 3 H 0.079 0.921 4 C -0.096 4.096 5 N -0.227 5.227 6 C -0.065 4.065 7 C -0.107 4.107 8 C -0.151 4.151 9 C 0.095 3.905 10 N -0.324 5.324 11 C 0.393 3.607 12 O -0.499 6.499 13 N -0.352 5.352 14 C -0.066 4.066 15 C 0.153 3.847 16 C -0.580 4.580 17 H 0.070 0.930 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.192 1.192 23 H -0.210 1.210 24 C -0.201 4.201 25 C 0.103 3.897 26 F -0.122 7.122 27 C -0.097 4.097 28 C 0.033 3.967 29 H 0.145 0.855 30 C -0.231 4.231 31 O -0.305 6.305 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.182 0.818 38 H 0.189 0.811 39 H 0.267 0.733 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.050 0.950 44 H 0.017 0.983 45 H 0.076 0.924 46 H 0.134 0.866 47 H 0.079 0.921 48 H 0.104 0.896 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.693 -8.399 25.868 29.605 hybrid contribution 1.283 0.164 -1.065 1.676 sum -10.410 -8.235 24.803 28.131 Atomic orbital electron populations 1.21743 0.91182 1.03446 1.03415 1.22207 0.95869 0.95479 0.83571 0.92078 1.22933 0.85571 1.01282 0.99823 1.59658 1.10143 1.52787 1.00158 1.18668 1.00206 0.93246 0.94352 1.21481 0.99067 0.93168 0.96973 1.21100 0.96358 1.02452 0.95149 1.17468 0.94420 0.91932 0.86726 1.42628 1.67808 1.13242 1.08695 1.16138 0.78611 0.84875 0.81067 1.90884 1.59878 1.14833 1.84344 1.47371 1.68367 1.09581 1.09903 1.21940 1.02772 0.78061 1.03782 1.18724 0.95099 0.90015 0.80848 1.21729 0.96519 1.33085 1.06637 0.93010 1.25820 1.02467 0.95749 0.95059 1.70044 1.37072 1.38298 1.11252 0.85398 0.79303 0.77846 0.78426 1.19323 1.19201 1.20990 1.21160 1.04407 0.97622 0.96956 1.17509 0.98046 0.79663 0.94502 1.91443 1.90617 1.37305 1.92822 1.22937 1.01483 0.96450 0.88789 1.22396 0.80221 0.96525 0.97561 0.85460 1.22253 1.01684 0.97059 1.02097 1.88026 1.21333 1.78095 1.43072 0.91414 0.91189 0.89933 0.90305 0.92153 0.81826 0.81074 0.73350 0.90625 0.90788 0.89337 0.94979 0.98264 0.92378 0.86586 0.92087 0.89558 0.91774 0.91265 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.57 71.98 0.69 -1.00 16 2 C 0.09 1.41 3.02 30.63 0.09 1.50 16 3 H 0.06 1.12 6.50 -2.38 -0.02 1.10 16 4 C 0.03 0.54 4.65 86.32 0.40 0.94 16 5 N -0.51 -10.43 3.90 -693.86 -2.71 -13.14 16 6 C 0.03 0.73 4.75 38.15 0.18 0.91 16 7 C -0.09 -1.52 8.62 22.38 0.19 -1.33 16 8 C -0.13 -2.41 9.96 22.39 0.22 -2.19 16 9 C 0.19 5.41 6.30 38.09 0.24 5.65 16 10 N -0.67 -19.62 5.22 -317.03 -1.66 -21.28 16 11 C 0.69 29.09 8.12 179.05 1.45 30.54 16 12 O -0.62 -32.89 13.36 -4.01 -0.05 -32.95 16 13 N -0.62 -25.64 2.86 -869.30 -2.48 -28.12 16 14 C 0.08 2.07 10.24 127.77 1.31 3.38 16 15 C 0.27 14.67 5.16 85.64 0.44 15.11 16 16 C -0.54 -31.10 9.39 25.60 0.24 -30.86 16 17 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 18 C 0.01 0.47 5.46 84.65 0.46 0.93 16 19 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 20 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 C -0.18 -6.31 8.67 22.41 0.19 -6.12 16 25 C 0.12 3.90 7.31 22.47 0.16 4.06 16 26 F -0.14 -5.05 17.07 44.97 0.77 -4.28 16 27 C 0.03 0.48 4.82 86.31 0.42 0.89 16 28 C 0.09 1.34 3.92 30.63 0.12 1.46 16 29 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 30 C -0.17 -2.78 8.89 71.98 0.64 -2.14 16 31 O -0.39 -6.71 10.28 -148.98 -1.53 -8.24 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 0.91 7.21 -2.39 -0.02 0.89 16 37 H 0.16 1.84 7.04 -2.91 -0.02 1.81 16 38 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 39 H 0.43 8.44 6.52 -92.71 -0.60 7.84 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 2.13 8.07 -2.38 -0.02 2.11 16 42 H 0.09 1.69 6.30 -2.39 -0.02 1.68 16 43 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 44 H 0.00 -0.05 7.42 -2.38 -0.02 -0.07 16 45 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.12 5.14 6.22 -2.91 -0.02 5.12 16 47 H 0.06 0.82 7.41 -2.38 -0.02 0.80 16 48 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.05 1.08 6.13 -2.39 -0.01 1.07 16 Total: -1.00 -79.09 410.03 2.46 -76.64 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.35 Total: 18.04 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 7.46 Total: 21.75 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -6.56 Total: -118.26 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.59 Total: -41.19 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.77 Total: -4.28 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -79.09 2.46 -76.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075572830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.080 kcal (2) G-P(sol) polarization free energy of solvation -79.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds