Wall clock time and date at job start Tue Mar 31 2020 06:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.47214 * 2 1 4 4 N 1.30823 * 126.44222 * 269.97562 * 3 2 1 5 5 N 1.28924 * 109.74098 * 180.16086 * 4 3 2 6 6 C 1.29726 * 109.43152 * 0.10072 * 5 4 3 7 7 N 1.34799 * 126.43710 * 90.00202 * 3 2 1 8 8 C 1.46216 * 128.60708 * 359.50449 * 7 3 2 9 9 C 1.53331 * 109.18140 * 161.66884 * 8 7 3 10 10 N 1.47084 * 109.24713 * 45.63052 * 9 8 7 11 11 C 1.34775 * 120.94609 * 116.43127 * 10 9 8 12 12 O 1.21681 * 119.99786 * 6.09410 * 11 10 9 13 13 C 1.46934 * 120.00055 * 186.09213 * 11 10 9 14 14 C 1.36379 * 126.72481 * 37.79846 * 13 11 10 15 15 N 1.35893 * 109.73152 * 180.02562 * 14 13 11 16 16 C 1.37129 * 124.84026 * 180.26635 * 15 14 13 17 17 H 1.08003 * 119.99852 * 157.89077 * 16 15 14 18 18 C 1.38983 * 119.99948 * 337.88612 * 16 15 14 19 19 N 1.31333 * 120.00088 * 348.97833 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 168.97825 * 18 16 15 21 21 H 1.48502 * 109.47038 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46851 * 120.00021 * 20 18 16 23 23 H 1.48496 * 109.47252 * 240.00107 * 20 18 16 24 24 C 1.38314 * 110.31771 * 0.02562 * 15 14 13 25 25 C 1.39008 * 133.16202 * 180.02562 * 24 15 14 26 26 C 1.37900 * 119.93167 * 179.97438 * 25 24 15 27 27 C 1.38682 * 120.60990 * 359.97438 * 26 25 24 28 28 C 1.37891 * 120.28712 * 0.03728 * 27 26 25 29 29 C 1.39183 * 119.67569 * 359.97412 * 28 27 26 30 30 C 1.47521 * 118.10750 * 296.70095 * 10 9 8 31 31 H 1.08997 * 109.46582 * 299.99623 * 1 2 3 32 32 H 1.08993 * 109.46868 * 59.99352 * 1 2 3 33 33 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46680 * 239.99830 * 2 1 3 35 35 H 1.09000 * 109.47212 * 120.00060 * 2 1 3 36 36 H 1.08999 * 109.51687 * 41.76301 * 8 7 3 37 37 H 1.09001 * 109.56844 * 281.61140 * 8 7 3 38 38 H 1.08994 * 109.50979 * 285.70054 * 9 8 7 39 39 H 1.08995 * 109.50731 * 165.55846 * 9 8 7 40 40 H 1.07995 * 125.13580 * 0.04332 * 14 13 11 41 41 H 0.96999 * 120.00324 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.03618 * 359.96962 * 25 24 15 43 43 H 1.08000 * 119.69702 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.85281 * 180.02562 * 27 26 25 45 45 H 1.07994 * 120.16238 * 179.97438 * 28 27 26 46 46 H 1.08996 * 109.95806 * 162.28978 * 30 10 9 47 47 H 1.08997 * 109.96105 * 283.57325 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1533 -1.0524 5 7 2.7066 3.3164 -0.6819 6 6 2.7308 3.3734 0.6139 7 7 2.2993 2.1756 1.0845 8 6 2.1643 1.8231 2.4971 9 6 2.9958 2.7965 3.3409 10 7 2.7529 4.1707 2.8761 11 6 2.1800 5.0846 3.6843 12 8 1.9572 4.8121 4.8490 13 6 1.8246 6.4099 3.1588 14 6 1.3246 6.6892 1.9211 15 7 1.1208 8.0273 1.7999 16 6 0.6206 8.6455 0.6827 17 1 0.1584 9.6182 0.7650 18 6 0.7085 8.0205 -0.5555 19 7 1.4539 6.9486 -0.6986 20 14 -0.2334 8.7049 -2.0162 21 1 -0.9924 9.9099 -1.5952 22 1 0.7214 9.0729 -3.0925 23 1 -1.1775 7.6765 -2.5224 24 6 1.4846 8.6761 2.9660 25 6 1.4733 10.0106 3.3548 26 6 1.9073 10.3637 4.6152 27 6 2.3565 9.3982 5.5037 28 6 2.3752 8.0694 5.1357 29 6 1.9401 7.6998 3.8664 30 6 3.1486 4.5185 1.4982 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.5235 0.8061 2.6546 37 1 1.1168 1.8892 2.7913 38 1 4.0540 2.5581 3.2346 39 1 2.7058 2.7099 4.3880 40 1 1.1212 5.9575 1.1533 41 1 1.5150 6.5121 -1.5627 42 1 1.1252 10.7702 2.6706 43 1 1.8974 11.4018 4.9133 44 1 2.6933 9.6884 6.4880 45 1 2.7258 7.3193 5.8290 46 1 2.6438 5.4326 1.1856 47 1 4.2290 4.6518 1.4437 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075602029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:52 Heat of formation + Delta-G solvation = 117.279427 kcal Electronic energy + Delta-G solvation = -33488.090227 eV Core-core repulsion = 29252.103971 eV Total energy + Delta-G solvation = -4235.986257 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.11888 -40.55507 -39.01652 -36.43482 -36.29496 -34.90069 -33.48557 -33.19851 -31.42516 -30.72040 -29.51556 -28.86994 -27.99125 -26.36298 -25.45280 -24.24764 -23.98617 -21.91794 -21.74457 -20.86533 -20.63599 -20.12082 -18.29346 -17.86655 -17.13814 -16.70520 -16.47039 -15.82183 -15.50928 -15.17510 -14.95449 -14.69201 -14.50585 -14.44600 -14.34092 -13.81675 -13.68323 -13.45860 -13.13168 -13.06057 -12.81479 -12.64408 -12.43102 -12.34980 -12.00806 -11.90677 -11.77662 -11.49415 -11.42082 -11.38387 -11.19042 -11.10501 -10.82263 -10.73173 -10.49907 -10.14981 -10.09884 -9.99713 -9.46623 -9.29276 -8.90100 -8.75560 -8.50779 -7.37124 -7.08041 -6.80607 -4.54462 1.91184 1.96610 2.38869 2.46029 2.80175 2.98139 3.04763 3.05663 3.12071 3.18786 3.69393 3.96233 4.21309 4.33946 4.40992 4.50387 4.59469 4.67141 4.77663 4.86975 4.89349 5.02246 5.17686 5.28418 5.43068 5.48354 5.56827 5.65396 5.68766 5.71129 5.73673 5.76583 5.92926 5.96494 6.06877 6.13485 6.15313 6.30608 6.33489 6.48093 6.64856 6.71389 6.79002 6.88080 6.97316 7.00050 7.23697 7.35574 7.39444 7.62530 7.77503 7.87221 8.23289 8.65994 8.75472 8.97325 9.10167 10.08728 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008685 B = 0.004224 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.301532 B = 6627.159857 C = 9277.872587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.031 4.031 3 C 0.168 3.832 4 N -0.298 5.298 5 N -0.268 5.268 6 C 0.178 3.822 7 N -0.468 5.468 8 C 0.089 3.911 9 C 0.101 3.899 10 N -0.627 5.627 11 C 0.617 3.383 12 O -0.555 6.555 13 C -0.324 4.324 14 C 0.115 3.885 15 N -0.262 5.262 16 C -0.348 4.348 17 H 0.112 0.888 18 C 0.048 3.952 19 N -0.834 5.834 20 Si 0.941 3.059 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.272 1.272 24 C 0.045 3.955 25 C -0.098 4.098 26 C -0.140 4.140 27 C -0.154 4.154 28 C -0.086 4.086 29 C -0.056 4.056 30 C 0.176 3.824 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.181 0.819 41 H 0.292 0.708 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.162 0.838 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -10.139 3.432 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 C -0.099 4.099 4 N -0.138 5.138 5 N -0.107 5.107 6 C -0.090 4.090 7 N -0.161 5.161 8 C -0.035 4.035 9 C -0.023 4.023 10 N -0.362 5.362 11 C 0.412 3.588 12 O -0.434 6.434 13 C -0.334 4.334 14 C -0.029 4.029 15 N 0.078 4.922 16 C -0.476 4.476 17 H 0.129 0.871 18 C -0.164 4.164 19 N -0.464 5.464 20 Si 0.765 3.235 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.062 4.062 25 C -0.118 4.118 26 C -0.160 4.160 27 C -0.174 4.174 28 C -0.105 4.105 29 C -0.061 4.061 30 C 0.051 3.949 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.198 0.802 41 H 0.104 0.896 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.179 0.821 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.276 -9.798 2.169 10.116 hybrid contribution -0.459 -0.250 0.395 0.655 sum 0.818 -10.049 2.564 10.403 Atomic orbital electron populations 1.21746 0.93678 1.02305 1.02895 1.19921 0.96573 0.86515 1.04093 1.24617 1.04372 0.97707 0.83167 1.74489 1.16791 0.98875 1.23640 1.74136 1.17222 1.11893 1.07496 1.24906 1.02583 0.88682 0.92846 1.45905 1.49650 1.12346 1.08163 1.22423 1.03192 1.00614 0.77263 1.21754 0.99228 0.81201 1.00136 1.48120 1.63516 1.10660 1.13953 1.17441 0.74289 0.82894 0.84134 1.90678 1.55727 1.79797 1.17175 1.19209 1.26033 0.91085 0.97085 1.22249 0.99814 0.85690 0.95155 1.40033 1.38931 1.04286 1.08945 1.20016 1.38121 1.05537 0.83904 0.87064 1.25541 0.95253 0.96135 0.99453 1.69627 1.31109 1.17870 1.27776 0.85626 0.79208 0.79229 0.79413 1.18778 1.19684 1.19715 1.18408 1.05515 0.93555 0.88754 1.19951 1.02721 0.92731 0.96423 1.20503 1.03455 0.98367 0.93644 1.20643 1.04704 0.92832 0.99177 1.20313 1.00207 0.95362 0.94578 1.18505 1.02637 0.91172 0.93769 1.20810 1.01746 0.95278 0.77025 0.92746 0.91653 0.91422 0.88452 0.90339 0.88080 0.89076 0.90415 0.86424 0.80225 0.89621 0.87080 0.87135 0.87368 0.87069 0.82134 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.90 37.16 0.37 -0.96 16 2 C -0.03 -0.30 6.33 -27.88 -0.18 -0.47 16 3 C 0.17 2.44 7.31 -155.37 -1.14 1.30 16 4 N -0.30 -5.47 12.23 32.71 0.40 -5.07 16 5 N -0.27 -5.35 12.21 32.69 0.40 -4.95 16 6 C 0.18 3.15 7.86 -155.48 -1.22 1.92 16 7 N -0.47 -6.79 3.11 -110.96 -0.35 -7.13 16 8 C 0.09 0.97 6.92 -4.02 -0.03 0.94 16 9 C 0.10 1.25 6.43 -3.55 -0.02 1.22 16 10 N -0.63 -10.55 2.98 -175.06 -0.52 -11.07 16 11 C 0.62 12.62 7.61 -12.74 -0.10 12.52 16 12 O -0.55 -12.16 16.55 5.21 0.09 -12.08 16 13 C -0.32 -7.30 5.65 -103.24 -0.58 -7.88 16 14 C 0.11 2.68 7.64 -16.42 -0.13 2.55 16 15 N -0.26 -6.37 2.89 -59.49 -0.17 -6.54 16 16 C -0.35 -8.35 9.89 -14.91 -0.15 -8.50 16 17 H 0.11 2.55 7.86 -52.48 -0.41 2.14 16 18 C 0.05 1.10 5.34 -17.49 -0.09 1.01 16 19 N -0.83 -19.74 10.72 55.50 0.60 -19.14 16 20 Si 0.94 18.21 29.57 -169.99 -5.03 13.18 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 C 0.04 1.04 6.73 -83.84 -0.56 0.48 16 25 C -0.10 -2.01 9.93 -39.42 -0.39 -2.40 16 26 C -0.14 -2.51 10.02 -39.54 -0.40 -2.91 16 27 C -0.15 -2.79 10.03 -39.54 -0.40 -3.19 16 28 C -0.09 -1.76 10.09 -39.36 -0.40 -2.16 16 29 C -0.06 -1.28 6.35 -104.92 -0.67 -1.94 16 30 C 0.18 3.10 6.45 -4.68 -0.03 3.07 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.54 7.68 -51.93 -0.40 0.15 16 36 H 0.10 0.71 7.76 -51.93 -0.40 0.31 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.12 1.43 7.01 -51.93 -0.36 1.07 16 40 H 0.18 4.29 5.01 -52.49 -0.26 4.02 16 41 H 0.29 6.74 8.31 -40.82 -0.34 6.40 16 42 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 46 H 0.16 3.30 3.42 -51.93 -0.18 3.12 16 47 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -30.18 388.33 -10.64 -40.83 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.80 Total: 11.52 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -6.11 Total: -5.40 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.36 Total: -53.91 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.18 -10.64 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075602029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.106 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds