Wall clock time and date at job start Tue Mar 31 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.47214 * 2 1 4 4 N 1.30823 * 126.44222 * 269.97562 * 3 2 1 5 5 N 1.28924 * 109.74098 * 180.16086 * 4 3 2 6 6 C 1.29726 * 109.43152 * 0.10072 * 5 4 3 7 7 N 1.34799 * 126.43710 * 90.00202 * 3 2 1 8 8 C 1.46216 * 128.60708 * 359.50449 * 7 3 2 9 9 C 1.53331 * 109.18140 * 161.66884 * 8 7 3 10 10 N 1.47084 * 109.24713 * 45.63052 * 9 8 7 11 11 C 1.34775 * 120.94609 * 116.43127 * 10 9 8 12 12 O 1.21681 * 119.99786 * 6.09410 * 11 10 9 13 13 C 1.46934 * 120.00055 * 186.09213 * 11 10 9 14 14 C 1.36379 * 126.72481 * 37.79846 * 13 11 10 15 15 N 1.35893 * 109.73152 * 180.02562 * 14 13 11 16 16 C 1.37129 * 124.84026 * 180.26635 * 15 14 13 17 17 H 1.08003 * 119.99852 * 157.89077 * 16 15 14 18 18 C 1.38983 * 119.99948 * 337.88612 * 16 15 14 19 19 N 1.31333 * 120.00088 * 348.97833 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 168.97825 * 18 16 15 21 21 H 1.48502 * 109.47038 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46851 * 120.00021 * 20 18 16 23 23 H 1.48496 * 109.47252 * 240.00107 * 20 18 16 24 24 C 1.38314 * 110.31771 * 0.02562 * 15 14 13 25 25 C 1.39008 * 133.16202 * 180.02562 * 24 15 14 26 26 C 1.37900 * 119.93167 * 179.97438 * 25 24 15 27 27 C 1.38682 * 120.60990 * 359.97438 * 26 25 24 28 28 C 1.37891 * 120.28712 * 0.03728 * 27 26 25 29 29 C 1.39183 * 119.67569 * 359.97412 * 28 27 26 30 30 C 1.47521 * 118.10750 * 296.70095 * 10 9 8 31 31 H 1.08997 * 109.46582 * 299.99623 * 1 2 3 32 32 H 1.08993 * 109.46868 * 59.99352 * 1 2 3 33 33 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46680 * 239.99830 * 2 1 3 35 35 H 1.09000 * 109.47212 * 120.00060 * 2 1 3 36 36 H 1.08999 * 109.51687 * 41.76301 * 8 7 3 37 37 H 1.09001 * 109.56844 * 281.61140 * 8 7 3 38 38 H 1.08994 * 109.50979 * 285.70054 * 9 8 7 39 39 H 1.08995 * 109.50731 * 165.55846 * 9 8 7 40 40 H 1.07995 * 125.13580 * 0.04332 * 14 13 11 41 41 H 0.96999 * 120.00324 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.03618 * 359.96962 * 25 24 15 43 43 H 1.08000 * 119.69702 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.85281 * 180.02562 * 27 26 25 45 45 H 1.07994 * 120.16238 * 179.97438 * 28 27 26 46 46 H 1.08996 * 109.95806 * 162.28978 * 30 10 9 47 47 H 1.08997 * 109.96105 * 283.57325 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1533 -1.0524 5 7 2.7066 3.3164 -0.6819 6 6 2.7308 3.3734 0.6139 7 7 2.2993 2.1756 1.0845 8 6 2.1643 1.8231 2.4971 9 6 2.9958 2.7965 3.3409 10 7 2.7529 4.1707 2.8761 11 6 2.1800 5.0846 3.6843 12 8 1.9572 4.8121 4.8490 13 6 1.8246 6.4099 3.1588 14 6 1.3246 6.6892 1.9211 15 7 1.1208 8.0273 1.7999 16 6 0.6206 8.6455 0.6827 17 1 0.1584 9.6182 0.7650 18 6 0.7085 8.0205 -0.5555 19 7 1.4539 6.9486 -0.6986 20 14 -0.2334 8.7049 -2.0162 21 1 -0.9924 9.9099 -1.5952 22 1 0.7214 9.0729 -3.0925 23 1 -1.1775 7.6765 -2.5224 24 6 1.4846 8.6761 2.9660 25 6 1.4733 10.0106 3.3548 26 6 1.9073 10.3637 4.6152 27 6 2.3565 9.3982 5.5037 28 6 2.3752 8.0694 5.1357 29 6 1.9401 7.6998 3.8664 30 6 3.1486 4.5185 1.4982 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.5235 0.8061 2.6546 37 1 1.1168 1.8892 2.7913 38 1 4.0540 2.5581 3.2346 39 1 2.7058 2.7099 4.3880 40 1 1.1212 5.9575 1.1533 41 1 1.5150 6.5121 -1.5627 42 1 1.1252 10.7702 2.6706 43 1 1.8974 11.4018 4.9133 44 1 2.6933 9.6884 6.4880 45 1 2.7258 7.3193 5.8290 46 1 2.6438 5.4326 1.1856 47 1 4.2290 4.6518 1.4437 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075602029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:51 Heat of formation + Delta-G solvation = 102.507035 kcal Electronic energy + Delta-G solvation = -33488.730806 eV Core-core repulsion = 29252.103971 eV Total energy + Delta-G solvation = -4236.626836 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.35494 -42.20315 -40.49772 -37.99453 -37.68506 -36.02109 -35.09915 -34.37895 -32.99185 -31.98861 -30.77032 -30.43957 -29.53154 -27.77172 -27.02626 -25.37155 -25.05888 -23.51871 -23.25086 -22.31222 -21.88509 -21.45477 -19.74692 -19.55202 -18.35450 -18.16923 -17.75660 -17.20348 -17.04929 -16.66226 -16.28780 -16.05915 -15.99641 -15.57053 -15.42669 -15.39150 -15.02116 -14.71668 -14.66981 -14.49369 -14.21784 -13.90857 -13.67107 -13.62997 -13.39460 -13.10393 -13.00205 -12.94036 -12.87412 -12.57415 -12.41004 -12.36721 -12.26468 -12.15273 -12.08733 -11.69823 -11.35942 -11.15855 -11.09754 -10.93604 -10.40124 -10.21242 -9.88258 -9.01695 -8.79734 -8.49669 -6.35401 0.30709 0.76354 0.83038 1.19408 1.32328 1.36337 1.50425 1.51724 1.78997 1.85895 2.07093 2.32148 2.81536 2.88284 3.12041 3.24597 3.29627 3.38821 3.68612 3.87513 3.98398 4.05056 4.12921 4.23922 4.27670 4.30503 4.34792 4.37298 4.50269 4.54424 4.63177 4.63696 4.65951 4.71955 4.81444 4.91042 4.94050 5.02573 5.08846 5.10992 5.12636 5.21406 5.28131 5.33171 5.35910 5.58369 5.75045 5.83702 5.88868 6.04867 6.19109 6.30385 6.45318 6.94122 7.16310 7.35802 7.69778 8.32060 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008685 B = 0.004224 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.301532 B = 6627.159857 C = 9277.872587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 C 0.187 3.813 4 N -0.344 5.344 5 N -0.310 5.310 6 C 0.167 3.833 7 N -0.465 5.465 8 C 0.088 3.912 9 C 0.095 3.905 10 N -0.619 5.619 11 C 0.618 3.382 12 O -0.574 6.574 13 C -0.335 4.335 14 C 0.108 3.892 15 N -0.282 5.282 16 C -0.374 4.374 17 H 0.114 0.886 18 C 0.012 3.988 19 N -0.853 5.853 20 Si 1.003 2.997 21 H -0.253 1.253 22 H -0.270 1.270 23 H -0.276 1.276 24 C 0.016 3.984 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.142 4.142 28 C -0.101 4.101 29 C -0.084 4.084 30 C 0.181 3.819 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.154 0.846 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.168 0.832 41 H 0.288 0.712 42 H 0.119 0.881 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.114 0.886 46 H 0.132 0.868 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.456 -11.271 5.222 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 C -0.082 4.082 4 N -0.184 5.184 5 N -0.149 5.149 6 C -0.103 4.103 7 N -0.157 5.157 8 C -0.035 4.035 9 C -0.027 4.027 10 N -0.353 5.353 11 C 0.412 3.588 12 O -0.455 6.455 13 C -0.346 4.346 14 C -0.036 4.036 15 N 0.057 4.943 16 C -0.501 4.501 17 H 0.132 0.868 18 C -0.197 4.197 19 N -0.483 5.483 20 Si 0.824 3.176 21 H -0.176 1.176 22 H -0.195 1.195 23 H -0.201 1.201 24 C -0.090 4.090 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.160 4.160 28 C -0.120 4.120 29 C -0.089 4.089 30 C 0.056 3.944 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.172 0.828 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.185 0.815 41 H 0.099 0.901 42 H 0.137 0.863 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.132 0.868 46 H 0.149 0.851 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.437 -10.952 3.971 11.738 hybrid contribution -0.469 0.079 -0.024 0.476 sum 0.968 -10.874 3.947 11.608 Atomic orbital electron populations 1.21728 0.93252 1.03905 1.01371 1.20257 0.96687 0.83436 1.06558 1.25550 1.01513 0.98946 0.82142 1.74390 1.19103 0.99137 1.25737 1.74021 1.18626 1.13246 1.08993 1.24701 1.03450 0.89738 0.92435 1.46093 1.48785 1.11175 1.09623 1.22747 1.03363 1.02645 0.74695 1.22119 1.01168 0.78722 1.00681 1.48004 1.62137 1.12065 1.13089 1.17208 0.74561 0.82890 0.84142 1.90647 1.56907 1.80244 1.17734 1.19569 1.25669 0.92497 0.96818 1.22134 1.00528 0.85624 0.95278 1.40205 1.39961 1.04615 1.09516 1.20278 1.39178 1.06118 0.84513 0.86825 1.26369 0.95667 0.96288 1.01405 1.69751 1.32068 1.18744 1.27775 0.84717 0.77878 0.78728 0.76245 1.17618 1.19480 1.20115 1.18916 1.06480 0.94976 0.88666 1.20281 1.03610 0.91838 0.97959 1.21001 1.00741 1.00476 0.92149 1.21122 1.02580 0.91590 1.00733 1.20525 1.00783 0.96892 0.93805 1.18881 1.03790 0.91284 0.94960 1.20559 1.01845 0.94535 0.77478 0.93328 0.94156 0.88221 0.87403 0.86411 0.82822 0.88880 0.87995 0.85773 0.81515 0.90122 0.86255 0.82923 0.83306 0.86759 0.85069 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.90 71.98 0.71 -1.54 16 2 C -0.03 -0.48 6.33 29.85 0.19 -0.29 16 3 C 0.19 5.19 7.31 138.11 1.01 6.20 16 4 N -0.34 -12.92 12.23 -50.42 -0.62 -13.54 16 5 N -0.31 -12.93 12.21 -50.49 -0.62 -13.55 16 6 C 0.17 6.04 7.86 138.10 1.09 7.13 16 7 N -0.47 -12.94 3.11 -504.98 -1.57 -14.51 16 8 C 0.09 1.64 6.92 86.54 0.60 2.24 16 9 C 0.10 2.17 6.43 86.38 0.56 2.73 16 10 N -0.62 -21.01 2.98 -826.00 -2.46 -23.47 16 11 C 0.62 25.89 7.61 86.52 0.66 26.55 16 12 O -0.57 -25.37 16.55 -4.29 -0.07 -25.44 16 13 C -0.33 -15.83 5.65 -18.97 -0.11 -15.93 16 14 C 0.11 5.36 7.64 83.63 0.64 6.00 16 15 N -0.28 -14.45 2.89 -342.12 -0.99 -15.44 16 16 C -0.37 -18.81 9.89 84.04 0.83 -17.98 16 17 H 0.11 5.43 7.86 -2.91 -0.02 5.41 16 18 C 0.01 0.55 5.34 84.95 0.45 1.01 16 19 N -0.85 -42.93 10.72 21.66 0.23 -42.70 16 20 Si 1.00 38.53 29.57 68.60 2.03 40.56 16 21 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 24 C 0.02 0.78 6.73 38.83 0.26 1.05 16 25 C -0.12 -4.74 9.93 22.37 0.22 -4.52 16 26 C -0.12 -4.13 10.02 22.30 0.22 -3.91 16 27 C -0.14 -4.73 10.03 22.29 0.22 -4.51 16 28 C -0.10 -4.10 10.09 22.41 0.23 -3.88 16 29 C -0.08 -3.96 6.35 -20.06 -0.13 -4.09 16 30 C 0.18 6.66 6.45 85.41 0.55 7.21 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.12 0.99 7.68 -2.39 -0.02 0.98 16 36 H 0.15 1.33 7.76 -2.39 -0.02 1.31 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.12 2.75 7.01 -2.39 -0.02 2.74 16 40 H 0.17 8.63 5.01 -2.91 -0.01 8.62 16 41 H 0.29 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 43 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 45 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 46 H 0.13 5.80 3.42 -2.39 -0.01 5.79 16 47 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -71.94 388.33 5.17 -66.77 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 1.02 Total: 37.84 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 8.21 Total: 3.47 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -6.02 Total: -123.20 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.07 Total: -25.44 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -71.94 5.17 -66.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075602029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.275 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds