Wall clock time and date at job start Tue Mar 31 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47174 * 239.99809 * 3 2 1 5 5 H 1.48503 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47246 * 119.99941 * 3 2 1 7 7 C 1.37874 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99713 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00200 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00066 * 278.72531 * 10 9 7 12 12 C 1.52998 * 109.47271 * 268.48442 * 11 10 9 13 13 F 1.39901 * 109.47192 * 59.99873 * 12 11 10 14 14 F 1.39894 * 109.47541 * 180.02562 * 12 11 10 15 15 F 1.39905 * 109.46794 * 300.00045 * 12 11 10 16 16 C 1.34781 * 120.00065 * 98.71993 * 10 9 7 17 17 O 1.21556 * 120.00039 * 186.39397 * 16 10 9 18 18 C 1.47799 * 119.99507 * 6.40120 * 16 10 9 19 19 C 1.39603 * 120.13742 * 330.42959 * 18 16 10 20 20 C 1.37910 * 119.86441 * 180.25362 * 19 18 16 21 21 C 1.38477 * 120.13168 * 359.45479 * 20 19 18 22 22 Br 1.89099 * 119.86362 * 180.27406 * 21 20 19 23 23 C 1.38483 * 120.27294 * 0.25543 * 21 20 19 24 24 C 1.37902 * 120.13388 * 0.02562 * 23 21 20 25 25 H 0.97003 * 120.00523 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47101 * 59.99538 * 9 7 2 27 27 H 1.08998 * 109.47419 * 299.99976 * 9 7 2 28 28 H 1.09000 * 109.47168 * 28.48171 * 11 10 9 29 29 H 1.09001 * 109.47396 * 148.48293 * 11 10 9 30 30 H 1.07997 * 120.06733 * 359.97438 * 19 18 16 31 31 H 1.07995 * 119.93742 * 179.73096 * 20 19 18 32 32 H 1.08001 * 119.92872 * 180.02562 * 23 21 20 33 33 H 1.08004 * 120.07012 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.8252 -4.0444 -1.2535 12 6 1.9778 -5.1478 -1.8900 13 9 0.6938 -4.6577 -2.1511 14 9 2.5723 -5.5605 -3.0872 15 9 1.8928 -6.2347 -1.0132 16 6 2.5064 -4.2399 1.1543 17 8 3.3803 -5.0845 1.1753 18 6 1.7764 -3.9008 2.3938 19 6 1.2614 -2.6158 2.5747 20 6 0.5857 -2.3040 3.7358 21 6 0.4078 -3.2656 4.7162 22 35 -0.5267 -2.8319 6.3019 23 6 0.9110 -4.5437 4.5400 24 6 1.5934 -4.8660 3.3858 25 1 -0.4851 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8915 -3.1976 -1.9366 29 1 3.8257 -4.4263 -1.0501 30 1 1.3959 -1.8663 1.8089 31 1 0.1907 -1.3091 3.8788 32 1 0.7686 -5.2895 5.3080 33 1 1.9851 -5.8632 3.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076092259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:58 Heat of formation + Delta-G solvation = -139.095292 kcal Electronic energy + Delta-G solvation = -25289.836218 eV Core-core repulsion = 20947.763753 eV Total energy + Delta-G solvation = -4342.072466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.998 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.71388 -47.26943 -47.15935 -40.11443 -38.01699 -35.67471 -33.11324 -32.31442 -30.98355 -29.93554 -28.62418 -27.34931 -23.81942 -23.43372 -22.37428 -22.03586 -19.54446 -18.18719 -18.15789 -17.42192 -16.91968 -16.31416 -16.22897 -15.56976 -14.80429 -14.65966 -14.37956 -14.09428 -14.03520 -13.97069 -13.65272 -13.45789 -13.34887 -13.33969 -13.11114 -12.88934 -12.55370 -12.12822 -11.82510 -11.79905 -11.35348 -11.15541 -11.04983 -10.70303 -10.48585 -10.30464 -10.10064 -9.94378 -9.42546 -8.91757 -8.64654 -8.38426 -8.21982 -6.45272 -4.57199 0.98585 1.60853 1.71852 2.86549 3.10887 3.15956 3.17756 3.25708 3.39960 4.00884 4.11469 4.25735 4.40540 4.62480 4.85579 4.99359 5.07147 5.14124 5.47904 5.59495 5.65972 5.68101 5.94638 6.25918 6.28581 6.35062 6.59755 6.73426 6.91625 7.08854 7.16777 7.47755 7.68878 7.87571 8.44706 8.59910 9.11994 10.59356 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.009294 B = 0.004218 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.918292 B = 6636.217642 C = 8903.154472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.072 3.928 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.201 3.799 10 N -0.588 5.588 11 C 0.082 3.918 12 C 0.431 3.569 13 F -0.179 7.179 14 F -0.189 7.189 15 F -0.181 7.181 16 C 0.563 3.437 17 O -0.549 6.549 18 C -0.120 4.120 19 C -0.087 4.087 20 C -0.104 4.104 21 C -0.069 4.069 22 Br -0.064 7.064 23 C -0.118 4.118 24 C -0.062 4.062 25 H 0.272 0.728 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.212 0.788 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -5.314 6.366 8.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.083 3.917 10 N -0.318 5.318 11 C -0.045 4.045 12 C 0.375 3.625 13 F -0.161 7.161 14 F -0.170 7.170 15 F -0.163 7.163 16 C 0.353 3.647 17 O -0.428 6.428 18 C -0.124 4.124 19 C -0.105 4.105 20 C -0.124 4.124 21 C -0.149 4.149 22 Br 0.021 6.979 23 C -0.138 4.138 24 C -0.082 4.082 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.146 0.854 29 H 0.136 0.864 30 H 0.228 0.772 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.578 -5.473 6.959 8.872 hybrid contribution 0.318 0.674 -0.546 0.924 sum -0.261 -4.799 6.413 8.014 Atomic orbital electron populations 1.69914 1.05991 1.28243 1.46950 1.24995 0.94947 0.99545 0.93937 0.86515 0.79676 0.82041 0.79219 1.19828 1.20858 1.19685 1.21379 0.94083 0.90001 1.53911 0.91339 1.20594 0.87966 0.82012 1.01146 1.47977 1.45005 1.34550 1.04274 1.22420 0.96742 0.96231 0.89103 1.21540 0.80218 0.84219 0.76513 1.93198 1.41241 1.87489 1.94128 1.93143 1.83752 1.91609 1.48523 1.93191 1.96367 1.57750 1.68964 1.18339 0.82442 0.80380 0.83535 1.90714 1.31937 1.34138 1.86029 1.19975 1.01698 0.95527 0.95172 1.23582 0.91061 0.98118 0.97705 1.21217 0.99637 0.98998 0.92510 1.22055 1.02196 0.97014 0.93616 1.96652 1.74953 1.94298 1.31955 1.20876 0.99649 0.94890 0.98348 1.21140 0.95976 0.99345 0.91690 0.91794 0.93749 0.90884 0.85353 0.86353 0.77229 0.84618 0.85042 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.44 13.29 55.43 0.74 -20.70 16 2 C 0.07 1.68 5.34 -17.82 -0.10 1.59 16 3 Si 0.90 18.55 29.54 -169.99 -5.02 13.53 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.56 -12.66 7.53 -34.44 -0.26 -12.91 16 8 H 0.07 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.20 4.30 4.50 -5.19 -0.02 4.27 16 10 N -0.59 -11.42 2.39 -176.19 -0.42 -11.84 16 11 C 0.08 1.37 5.47 -4.04 -0.02 1.34 16 12 C 0.43 7.20 3.29 37.16 0.12 7.32 16 13 F -0.18 -3.22 16.25 2.25 0.04 -3.18 16 14 F -0.19 -2.90 17.32 2.25 0.04 -2.86 16 15 F -0.18 -3.28 16.34 2.25 0.04 -3.24 16 16 C 0.56 11.22 6.94 -12.35 -0.09 11.13 16 17 O -0.55 -11.59 15.88 5.32 0.08 -11.50 16 18 C -0.12 -2.23 5.59 -104.96 -0.59 -2.82 16 19 C -0.09 -1.63 7.49 -39.19 -0.29 -1.93 16 20 C -0.10 -1.75 9.77 -39.61 -0.39 -2.13 16 21 C -0.07 -1.05 6.23 -39.40 -0.25 -1.30 16 22 Br -0.06 -0.83 33.69 -68.01 -2.29 -3.12 16 23 C -0.12 -1.70 9.77 -39.61 -0.39 -2.08 16 24 C -0.06 -0.99 9.60 -39.19 -0.38 -1.37 16 25 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 26 H 0.04 1.02 7.26 -51.93 -0.38 0.64 16 27 H 0.07 1.61 3.99 -52.24 -0.21 1.40 16 28 H 0.13 1.97 8.06 -51.93 -0.42 1.56 16 29 H 0.12 1.86 7.39 -51.93 -0.38 1.47 16 30 H 0.21 4.42 3.05 -52.49 -0.16 4.26 16 31 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.14 2.01 7.92 -52.48 -0.42 1.60 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -24.91 317.43 -7.01 -31.92 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -2.35 Total: 5.10 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.64 Total: 1.12 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.32 Total: -32.55 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 0.11 Total: -9.28 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -2.29 Total: -3.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -24.91 -7.01 -31.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076092259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.176 kcal (2) G-P(sol) polarization free energy of solvation -24.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds