Wall clock time and date at job start Tue Mar 31 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47174 * 239.99809 * 3 2 1 5 5 H 1.48503 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47246 * 119.99941 * 3 2 1 7 7 C 1.37874 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99713 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00200 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00066 * 278.72531 * 10 9 7 12 12 C 1.52998 * 109.47271 * 268.48442 * 11 10 9 13 13 F 1.39901 * 109.47192 * 59.99873 * 12 11 10 14 14 F 1.39894 * 109.47541 * 180.02562 * 12 11 10 15 15 F 1.39905 * 109.46794 * 300.00045 * 12 11 10 16 16 C 1.34781 * 120.00065 * 98.71993 * 10 9 7 17 17 O 1.21556 * 120.00039 * 186.39397 * 16 10 9 18 18 C 1.47799 * 119.99507 * 6.40120 * 16 10 9 19 19 C 1.39603 * 120.13742 * 330.42959 * 18 16 10 20 20 C 1.37910 * 119.86441 * 180.25362 * 19 18 16 21 21 C 1.38477 * 120.13168 * 359.45479 * 20 19 18 22 22 Br 1.89099 * 119.86362 * 180.27406 * 21 20 19 23 23 C 1.38483 * 120.27294 * 0.25543 * 21 20 19 24 24 C 1.37902 * 120.13388 * 0.02562 * 23 21 20 25 25 H 0.97003 * 120.00523 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47101 * 59.99538 * 9 7 2 27 27 H 1.08998 * 109.47419 * 299.99976 * 9 7 2 28 28 H 1.09000 * 109.47168 * 28.48171 * 11 10 9 29 29 H 1.09001 * 109.47396 * 148.48293 * 11 10 9 30 30 H 1.07997 * 120.06733 * 359.97438 * 19 18 16 31 31 H 1.07995 * 119.93742 * 179.73096 * 20 19 18 32 32 H 1.08001 * 119.92872 * 180.02562 * 23 21 20 33 33 H 1.08004 * 120.07012 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.8252 -4.0444 -1.2535 12 6 1.9778 -5.1478 -1.8900 13 9 0.6938 -4.6577 -2.1511 14 9 2.5723 -5.5605 -3.0872 15 9 1.8928 -6.2347 -1.0132 16 6 2.5064 -4.2399 1.1543 17 8 3.3803 -5.0845 1.1753 18 6 1.7764 -3.9008 2.3938 19 6 1.2614 -2.6158 2.5747 20 6 0.5857 -2.3040 3.7358 21 6 0.4078 -3.2656 4.7162 22 35 -0.5267 -2.8319 6.3019 23 6 0.9110 -4.5437 4.5400 24 6 1.5934 -4.8660 3.3858 25 1 -0.4851 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8915 -3.1976 -1.9366 29 1 3.8257 -4.4263 -1.0501 30 1 1.3959 -1.8663 1.8089 31 1 0.1907 -1.3091 3.8788 32 1 0.7686 -5.2895 5.3080 33 1 1.9851 -5.8632 3.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076092259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:58 Heat of formation + Delta-G solvation = -149.671490 kcal Electronic energy + Delta-G solvation = -25290.294837 eV Core-core repulsion = 20947.763753 eV Total energy + Delta-G solvation = -4342.531084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.998 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.09275 -48.61357 -48.58180 -41.57537 -39.38916 -37.26963 -34.80488 -33.63316 -32.30280 -31.26255 -30.02257 -28.96581 -25.29574 -25.02785 -23.71149 -23.40546 -20.98853 -19.57851 -19.53584 -18.99399 -18.41043 -17.93551 -17.64658 -16.94373 -16.44024 -16.08151 -15.80895 -15.49667 -15.40008 -15.39171 -15.02971 -14.82822 -14.74507 -14.71626 -14.57218 -14.31289 -14.10536 -13.56793 -13.26889 -13.15816 -12.91218 -12.70644 -12.54477 -12.15309 -11.92921 -11.81843 -11.60311 -11.27047 -10.94949 -10.63821 -10.00298 -9.81977 -9.67933 -8.24490 -6.40495 -0.34702 0.32242 0.52856 1.43581 1.46278 1.49246 1.54598 1.78515 1.97174 2.39916 2.66373 2.86624 3.03210 3.06732 3.26317 3.53482 3.81732 3.95121 4.13518 4.30636 4.34190 4.36711 4.66606 4.68795 5.00329 5.07003 5.19831 5.26408 5.37064 5.46298 5.67420 5.78023 5.93348 6.26967 6.70656 6.99589 7.31241 8.79995 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.009294 B = 0.004218 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.918292 B = 6636.217642 C = 8903.154472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.037 3.963 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.064 0.936 9 C 0.215 3.785 10 N -0.591 5.591 11 C 0.078 3.922 12 C 0.437 3.563 13 F -0.187 7.187 14 F -0.178 7.178 15 F -0.189 7.189 16 C 0.560 3.440 17 O -0.565 6.565 18 C -0.141 4.141 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.070 4.070 22 Br -0.037 7.037 23 C -0.104 4.104 24 C -0.061 4.061 25 H 0.272 0.728 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.188 0.812 31 H 0.138 0.862 32 H 0.165 0.835 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 -5.671 7.563 9.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.167 4.167 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.593 4.593 8 H 0.082 0.918 9 C 0.096 3.904 10 N -0.321 5.321 11 C -0.048 4.048 12 C 0.381 3.619 13 F -0.169 7.169 14 F -0.159 7.159 15 F -0.170 7.170 16 C 0.351 3.649 17 O -0.446 6.446 18 C -0.144 4.144 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.149 4.149 22 Br 0.049 6.951 23 C -0.123 4.123 24 C -0.080 4.080 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.148 0.852 30 H 0.204 0.796 31 H 0.156 0.844 32 H 0.183 0.817 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.358 -5.834 8.147 10.026 hybrid contribution 0.225 0.736 -0.840 1.139 sum -0.133 -5.098 7.307 8.910 Atomic orbital electron populations 1.69993 1.07038 1.28710 1.48219 1.25552 0.95445 1.01899 0.93780 0.85710 0.78557 0.79086 0.79065 1.19666 1.20913 1.19545 1.21490 0.93849 0.90707 1.53218 0.91774 1.20307 0.87940 0.82229 0.99964 1.47944 1.44772 1.34113 1.05232 1.22604 0.97020 0.96746 0.88411 1.21433 0.79821 0.83911 0.76702 1.93185 1.41932 1.87600 1.94190 1.93163 1.83478 1.91477 1.47808 1.93176 1.96385 1.58130 1.69345 1.18612 0.82287 0.80031 0.84018 1.90689 1.32665 1.34896 1.86355 1.20026 1.02745 0.96169 0.95484 1.23256 0.92712 0.97888 0.98209 1.21241 0.99563 0.99687 0.92489 1.22217 1.01694 0.96903 0.94128 1.96682 1.74263 1.94272 1.29894 1.21227 0.97727 0.95155 0.98198 1.21333 0.95837 0.99329 0.91539 0.91870 0.95666 0.91293 0.84184 0.85171 0.79586 0.84388 0.81708 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.77 13.29 21.45 0.28 -44.48 16 2 C 0.04 1.72 5.34 84.65 0.45 2.18 16 3 Si 0.95 37.96 29.54 68.60 2.03 39.98 16 4 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -25.52 7.53 25.60 0.19 -25.32 16 8 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.21 9.36 4.50 85.63 0.39 9.74 16 10 N -0.59 -23.09 2.39 -829.63 -1.98 -25.07 16 11 C 0.08 2.58 5.47 86.38 0.47 3.05 16 12 C 0.44 14.39 3.29 71.98 0.24 14.63 16 13 F -0.19 -6.74 16.25 44.97 0.73 -6.01 16 14 F -0.18 -5.27 17.32 44.97 0.78 -4.49 16 15 F -0.19 -6.74 16.34 44.97 0.73 -6.01 16 16 C 0.56 22.28 6.94 86.77 0.60 22.88 16 17 O -0.57 -23.63 15.88 -3.89 -0.06 -23.69 16 18 C -0.14 -5.19 5.59 -20.09 -0.11 -5.31 16 19 C -0.10 -3.88 7.49 22.52 0.17 -3.71 16 20 C -0.11 -3.63 9.77 22.25 0.22 -3.42 16 21 C -0.07 -1.97 6.23 22.39 0.14 -1.83 16 22 Br -0.04 -0.86 33.69 -20.37 -0.69 -1.55 16 23 C -0.10 -2.71 9.77 22.25 0.22 -2.49 16 24 C -0.06 -1.86 9.60 22.52 0.22 -1.64 16 25 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 26 H 0.03 1.19 7.26 -2.39 -0.02 1.17 16 27 H 0.07 3.13 3.99 -2.68 -0.01 3.12 16 28 H 0.14 4.25 8.06 -2.39 -0.02 4.23 16 29 H 0.13 3.99 7.39 -2.39 -0.02 3.97 16 30 H 0.19 8.02 3.05 -2.91 -0.01 8.01 16 31 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.15 4.10 7.92 -2.91 -0.02 4.08 16 Total: -1.00 -52.07 317.43 6.20 -45.87 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 1.18 Total: 16.69 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 3.19 Total: 8.76 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -1.69 Total: -69.56 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.06 Total: -23.69 kcal Atomic # 9 Polarization: -18.75 SS G_CDS: 2.24 Total: -16.50 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -0.69 Total: -1.55 kcal Total: -52.07 6.20 -45.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076092259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.806 kcal (2) G-P(sol) polarization free energy of solvation -52.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds