Wall clock time and date at job start Tue Mar 31 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34788 * 125.88336 * 2 1 4 4 C 1.36489 * 107.60515 * 180.15723 * 3 2 1 5 5 C 1.48382 * 126.23265 * 179.83801 * 4 3 2 6 6 C 1.39904 * 120.09943 * 184.71385 * 5 4 3 7 7 C 1.38309 * 117.95283 * 180.22623 * 6 5 4 8 8 C 1.39593 * 118.00415 * 359.51705 * 7 6 5 9 9 N 1.39113 * 120.05009 * 180.23502 * 8 7 6 10 10 C 1.46509 * 119.99764 * 0.25976 * 9 8 7 11 11 C 1.52998 * 109.47189 * 179.97438 * 10 9 8 12 12 O 1.42900 * 109.47258 * 64.99667 * 11 10 9 13 13 C 1.35668 * 117.00366 * 179.97438 * 12 11 10 14 14 C 1.39321 * 119.81765 * 359.72784 * 13 12 11 15 15 C 1.36435 * 120.18693 * 179.75982 * 14 13 12 16 16 C 1.40832 * 119.81107 * 0.51454 * 15 14 13 17 17 C 1.41216 * 120.17936 * 179.72402 * 16 15 14 18 18 H 1.07999 * 119.99646 * 204.56609 * 17 16 15 19 19 C 1.39889 * 120.00060 * 24.55893 * 17 16 15 20 20 N 1.30881 * 119.99993 * 17.93021 * 19 17 16 21 21 Si 1.86803 * 120.00078 * 197.92892 * 19 17 16 22 22 H 1.48503 * 109.47053 * 89.99873 * 21 19 17 23 23 H 1.48496 * 109.47026 * 210.00217 * 21 19 17 24 24 H 1.48498 * 109.46907 * 330.00340 * 21 19 17 25 25 C 1.40829 * 119.64251 * 359.73895 * 16 15 14 26 26 C 1.36439 * 119.81127 * 0.02562 * 25 16 15 27 27 N 1.32435 * 119.90649 * 0.49675 * 8 7 6 28 28 N 1.28356 * 122.20078 * 359.74208 * 27 8 7 29 29 C 1.40888 * 107.53476 * 359.57479 * 4 3 2 30 30 N 1.30654 * 108.09104 * 0.26101 * 29 4 3 31 31 H 1.08998 * 109.47100 * 270.28690 * 1 2 3 32 32 H 1.09000 * 109.46827 * 30.29293 * 1 2 3 33 33 H 1.09005 * 109.46746 * 150.28959 * 1 2 3 34 34 H 1.08000 * 126.20357 * 359.97438 * 3 2 1 35 35 H 1.07997 * 121.02398 * 359.96048 * 6 5 4 36 36 H 1.08006 * 120.99547 * 179.72920 * 7 6 5 37 37 H 0.96993 * 120.00648 * 180.25791 * 9 8 7 38 38 H 1.09002 * 109.46676 * 299.99617 * 10 9 8 39 39 H 1.08994 * 109.46929 * 59.99645 * 10 9 8 40 40 H 1.08993 * 109.47031 * 185.00228 * 11 10 9 41 41 H 1.09003 * 109.46800 * 305.00277 * 11 10 9 42 42 H 1.08005 * 119.89994 * 0.02562 * 14 13 12 43 43 H 1.08000 * 120.09324 * 180.25714 * 15 14 13 44 44 H 0.97003 * 120.00202 * 179.97438 * 20 19 17 45 45 H 1.07994 * 120.09573 * 179.97438 * 25 16 15 46 46 H 1.08006 * 119.90669 * 179.97438 * 26 25 16 47 47 H 1.08001 * 125.95223 * 180.26417 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2551 1.0921 0.0000 4 6 3.5511 0.6640 -0.0036 5 6 4.7592 1.5254 -0.0083 6 6 6.0305 0.9505 -0.1111 7 6 7.1261 1.7946 -0.1063 8 6 6.8951 3.1678 -0.0096 9 7 7.9659 4.0558 -0.0060 10 6 9.3371 3.5503 -0.1094 11 6 10.3172 4.7249 -0.0829 12 8 10.2484 5.3740 1.1883 13 6 11.0610 6.4437 1.3785 14 6 11.9142 6.8558 0.3571 15 6 12.7310 7.9334 0.5385 16 6 12.7178 8.6232 1.7662 17 6 13.5642 9.7361 1.9644 18 1 13.8602 10.0181 2.9640 19 6 14.0193 10.4731 0.8660 20 7 13.4093 10.3727 -0.2876 21 14 15.4977 11.6008 1.0456 22 1 16.7377 10.8443 0.7366 23 1 15.3667 12.7423 0.1049 24 1 15.5639 12.1121 2.4382 25 6 11.8562 8.1969 2.7954 26 6 11.0422 7.1203 2.5961 27 7 5.6553 3.6239 0.0838 28 7 4.6372 2.8422 0.0845 29 6 3.5328 -0.7447 0.0042 30 7 2.2857 -1.1343 0.0063 31 1 -0.3633 0.0051 1.0276 32 1 -0.3633 0.8874 -0.5184 33 1 -0.3633 -0.8926 -0.5094 34 1 1.9229 2.1197 -0.0004 35 1 6.1528 -0.1199 -0.1874 36 1 8.1302 1.4031 -0.1787 37 1 7.8049 5.0097 0.0650 38 1 9.5434 2.8855 0.7295 39 1 9.4527 3.0021 -1.0444 40 1 11.3297 4.3570 -0.2488 41 1 10.0551 5.4344 -0.8678 42 1 11.9259 6.3231 -0.5824 43 1 13.3888 8.2541 -0.2558 44 1 13.7246 10.8840 -1.0492 45 1 11.8404 8.7203 3.7399 46 1 10.3810 6.7918 3.3845 47 1 4.3988 -1.3901 0.0078 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078260686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:26 Heat of formation + Delta-G solvation = 124.863136 kcal Electronic energy + Delta-G solvation = -29481.925401 eV Core-core repulsion = 25246.267998 eV Total energy + Delta-G solvation = -4235.657402 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.64563 -40.72280 -38.98780 -37.05443 -35.99546 -34.18275 -33.42004 -32.92582 -32.14261 -30.35010 -29.69193 -29.15683 -28.28654 -27.06675 -24.98308 -24.65690 -23.86980 -22.64459 -21.22736 -21.07981 -20.93363 -20.25471 -18.09272 -17.75734 -17.43558 -17.28801 -17.08807 -15.90465 -15.71487 -15.54878 -15.46361 -15.11574 -14.80217 -14.68345 -14.16251 -14.00331 -13.92761 -13.68663 -13.38065 -13.24954 -13.17227 -12.98847 -12.86132 -12.43996 -12.32015 -11.94630 -11.60364 -11.53325 -11.30368 -11.14827 -11.05629 -11.01115 -10.99290 -10.63944 -10.39199 -10.00276 -9.85159 -9.82948 -9.59111 -9.42379 -9.08979 -9.06248 -7.74390 -7.70659 -7.07612 -6.77235 -4.29900 0.79482 0.84385 1.60593 2.08262 2.53011 2.72182 2.89633 2.92978 3.06155 3.09561 3.17811 3.75966 3.88985 3.92417 3.98337 4.17001 4.47336 4.50852 4.56975 4.61971 4.66028 4.69462 4.77174 4.81825 4.95324 4.97627 5.10772 5.25581 5.36776 5.43592 5.51648 5.60317 5.62313 5.71346 5.92745 5.98401 6.04617 6.19468 6.22675 6.55435 6.64493 6.84333 6.85729 7.02416 7.23288 7.26519 7.35286 7.46870 7.50824 7.84827 7.95749 8.10010 8.37354 8.59544 8.84873 8.85910 8.93901 10.17587 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.032787 B = 0.001253 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.783749 B =22337.568949 C =22562.350163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.375 5.375 3 C 0.097 3.903 4 C -0.188 4.188 5 C 0.093 3.907 6 C -0.073 4.073 7 C -0.176 4.176 8 C 0.340 3.660 9 N -0.705 5.705 10 C 0.129 3.871 11 C 0.055 3.945 12 O -0.326 6.326 13 C -0.014 4.014 14 C -0.173 4.173 15 C -0.135 4.135 16 C 0.088 3.912 17 C -0.463 4.463 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.799 5.799 21 Si 0.907 3.093 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.197 4.197 26 C -0.110 4.110 27 N -0.302 5.302 28 N -0.206 5.206 29 C 0.069 3.931 30 N -0.298 5.298 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.185 0.815 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.416 0.584 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.280 0.720 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.165 -20.313 -3.994 26.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.155 5.155 3 C -0.052 4.052 4 C -0.201 4.201 5 C -0.056 4.056 6 C -0.101 4.101 7 C -0.209 4.209 8 C 0.098 3.902 9 N -0.338 5.338 10 C 0.005 3.995 11 C -0.022 4.022 12 O -0.242 6.242 13 C -0.057 4.057 14 C -0.191 4.191 15 C -0.154 4.154 16 C 0.086 3.914 17 C -0.493 4.493 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.425 5.425 21 Si 0.732 3.268 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.216 4.216 26 C -0.129 4.129 27 N -0.153 5.153 28 N -0.048 5.048 29 C -0.119 4.119 30 N -0.118 5.118 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.202 0.798 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.253 0.747 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.091 0.909 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -19.022 -20.023 -3.972 27.902 hybrid contribution 2.303 0.479 -0.366 2.381 sum -16.719 -19.544 -4.339 26.083 Atomic orbital electron populations 1.21928 0.73736 1.04766 1.03690 1.48420 1.06948 1.03783 1.56386 1.22698 0.90398 0.93620 0.98475 1.18254 0.91003 0.92063 1.18806 1.20157 0.91681 0.91632 1.02134 1.21995 0.91422 1.01265 0.95469 1.21756 1.00971 0.92166 1.06051 1.20093 0.89610 0.88989 0.91555 1.44460 1.02319 1.08820 1.78248 1.21569 0.79623 0.96477 1.01856 1.22643 0.98488 0.93785 0.87259 1.85832 1.61796 1.43644 1.32950 1.18516 0.98572 0.92300 0.96266 1.20596 1.00840 1.00712 0.96996 1.20937 1.00609 0.94496 0.99358 1.17610 0.90584 0.92048 0.91155 1.19499 1.25578 1.10158 0.94032 0.90433 1.25877 0.96722 0.96867 0.94690 1.69836 1.35189 1.35455 1.02005 0.86322 0.81701 0.79402 0.79362 1.19343 1.20368 1.18626 1.20601 1.00596 1.00040 1.00404 1.19610 1.01556 0.97298 0.94390 1.72950 0.94795 1.28824 1.18736 1.72877 1.21996 1.02283 1.07632 1.23920 0.95309 0.93696 0.99023 1.77261 1.01566 1.08299 1.24667 0.90465 0.89125 0.89119 0.79794 0.83685 0.83604 0.74698 0.90775 0.90245 0.91090 0.92082 0.88795 0.86121 0.90947 0.88206 0.88559 0.79614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.46 59.85 0.69 1.06 16 2 N -0.37 -3.04 4.00 -67.89 -0.27 -3.31 16 3 C 0.10 0.85 11.22 -16.88 -0.19 0.66 16 4 C -0.19 -1.84 6.06 -105.35 -0.64 -2.48 16 5 C 0.09 1.04 6.84 -82.75 -0.57 0.48 16 6 C -0.07 -0.65 9.70 -38.93 -0.38 -1.03 16 7 C -0.18 -1.72 9.40 -39.05 -0.37 -2.08 16 8 C 0.34 4.31 7.75 -154.71 -1.20 3.11 16 9 N -0.70 -8.68 5.68 -60.25 -0.34 -9.02 16 10 C 0.13 1.34 5.30 -4.04 -0.02 1.32 16 11 C 0.05 0.74 4.86 37.16 0.18 0.93 16 12 O -0.33 -6.01 10.07 -18.71 -0.19 -6.20 16 13 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 14 C -0.17 -3.86 8.96 -39.83 -0.36 -4.21 16 15 C -0.13 -3.39 8.64 -39.25 -0.34 -3.73 16 16 C 0.09 2.31 5.57 -106.81 -0.60 1.72 16 17 C -0.46 -12.10 9.04 -37.83 -0.34 -12.44 16 18 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 19 C 0.08 1.86 5.13 -17.34 -0.09 1.77 16 20 N -0.80 -20.35 10.96 55.54 0.61 -19.74 16 21 Si 0.91 18.43 29.60 -169.99 -5.03 13.40 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.20 -4.77 9.74 -39.25 -0.38 -5.15 16 26 C -0.11 -2.49 9.92 -39.83 -0.40 -2.88 16 27 N -0.30 -4.46 11.53 31.26 0.36 -4.10 16 28 N -0.21 -2.83 11.23 33.38 0.37 -2.45 16 29 C 0.07 0.59 11.43 -17.05 -0.19 0.39 16 30 N -0.30 -2.92 12.54 30.81 0.39 -2.53 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.15 0.77 7.16 -52.49 -0.38 0.39 16 36 H 0.15 1.02 6.83 -52.48 -0.36 0.66 16 37 H 0.42 5.64 8.60 -40.82 -0.35 5.29 16 38 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 39 H 0.08 0.61 7.97 -51.93 -0.41 0.19 16 40 H 0.07 0.90 7.63 -51.93 -0.40 0.50 16 41 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 42 H 0.09 1.82 6.27 -52.48 -0.33 1.50 16 43 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 44 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 45 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 46 H 0.10 1.99 8.06 -52.48 -0.42 1.57 16 47 H 0.19 0.96 7.41 -52.49 -0.39 0.57 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -32.67 403.10 -9.31 -41.98 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.83 Total: 9.04 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -5.45 Total: -23.13 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 1.12 Total: -41.16 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.19 Total: -6.20 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.67 -9.31 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078260686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.844 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds