Wall clock time and date at job start Tue Mar 31 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34788 * 125.88336 * 2 1 4 4 C 1.36489 * 107.60515 * 180.15723 * 3 2 1 5 5 C 1.48382 * 126.23265 * 179.83801 * 4 3 2 6 6 C 1.39904 * 120.09943 * 184.71385 * 5 4 3 7 7 C 1.38309 * 117.95283 * 180.22623 * 6 5 4 8 8 C 1.39593 * 118.00415 * 359.51705 * 7 6 5 9 9 N 1.39113 * 120.05009 * 180.23502 * 8 7 6 10 10 C 1.46509 * 119.99764 * 0.25976 * 9 8 7 11 11 C 1.52998 * 109.47189 * 179.97438 * 10 9 8 12 12 O 1.42900 * 109.47258 * 64.99667 * 11 10 9 13 13 C 1.35668 * 117.00366 * 179.97438 * 12 11 10 14 14 C 1.39321 * 119.81765 * 359.72784 * 13 12 11 15 15 C 1.36435 * 120.18693 * 179.75982 * 14 13 12 16 16 C 1.40832 * 119.81107 * 0.51454 * 15 14 13 17 17 C 1.41216 * 120.17936 * 179.72402 * 16 15 14 18 18 H 1.07999 * 119.99646 * 204.56609 * 17 16 15 19 19 C 1.39889 * 120.00060 * 24.55893 * 17 16 15 20 20 N 1.30881 * 119.99993 * 17.93021 * 19 17 16 21 21 Si 1.86803 * 120.00078 * 197.92892 * 19 17 16 22 22 H 1.48503 * 109.47053 * 89.99873 * 21 19 17 23 23 H 1.48496 * 109.47026 * 210.00217 * 21 19 17 24 24 H 1.48498 * 109.46907 * 330.00340 * 21 19 17 25 25 C 1.40829 * 119.64251 * 359.73895 * 16 15 14 26 26 C 1.36439 * 119.81127 * 0.02562 * 25 16 15 27 27 N 1.32435 * 119.90649 * 0.49675 * 8 7 6 28 28 N 1.28356 * 122.20078 * 359.74208 * 27 8 7 29 29 C 1.40888 * 107.53476 * 359.57479 * 4 3 2 30 30 N 1.30654 * 108.09104 * 0.26101 * 29 4 3 31 31 H 1.08998 * 109.47100 * 270.28690 * 1 2 3 32 32 H 1.09000 * 109.46827 * 30.29293 * 1 2 3 33 33 H 1.09005 * 109.46746 * 150.28959 * 1 2 3 34 34 H 1.08000 * 126.20357 * 359.97438 * 3 2 1 35 35 H 1.07997 * 121.02398 * 359.96048 * 6 5 4 36 36 H 1.08006 * 120.99547 * 179.72920 * 7 6 5 37 37 H 0.96993 * 120.00648 * 180.25791 * 9 8 7 38 38 H 1.09002 * 109.46676 * 299.99617 * 10 9 8 39 39 H 1.08994 * 109.46929 * 59.99645 * 10 9 8 40 40 H 1.08993 * 109.47031 * 185.00228 * 11 10 9 41 41 H 1.09003 * 109.46800 * 305.00277 * 11 10 9 42 42 H 1.08005 * 119.89994 * 0.02562 * 14 13 12 43 43 H 1.08000 * 120.09324 * 180.25714 * 15 14 13 44 44 H 0.97003 * 120.00202 * 179.97438 * 20 19 17 45 45 H 1.07994 * 120.09573 * 179.97438 * 25 16 15 46 46 H 1.08006 * 119.90669 * 179.97438 * 26 25 16 47 47 H 1.08001 * 125.95223 * 180.26417 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2551 1.0921 0.0000 4 6 3.5511 0.6640 -0.0036 5 6 4.7592 1.5254 -0.0083 6 6 6.0305 0.9505 -0.1111 7 6 7.1261 1.7946 -0.1063 8 6 6.8951 3.1678 -0.0096 9 7 7.9659 4.0558 -0.0060 10 6 9.3371 3.5503 -0.1094 11 6 10.3172 4.7249 -0.0829 12 8 10.2484 5.3740 1.1883 13 6 11.0610 6.4437 1.3785 14 6 11.9142 6.8558 0.3571 15 6 12.7310 7.9334 0.5385 16 6 12.7178 8.6232 1.7662 17 6 13.5642 9.7361 1.9644 18 1 13.8602 10.0181 2.9640 19 6 14.0193 10.4731 0.8660 20 7 13.4093 10.3727 -0.2876 21 14 15.4977 11.6008 1.0456 22 1 16.7377 10.8443 0.7366 23 1 15.3667 12.7423 0.1049 24 1 15.5639 12.1121 2.4382 25 6 11.8562 8.1969 2.7954 26 6 11.0422 7.1203 2.5961 27 7 5.6553 3.6239 0.0838 28 7 4.6372 2.8422 0.0845 29 6 3.5328 -0.7447 0.0042 30 7 2.2857 -1.1343 0.0063 31 1 -0.3633 0.0051 1.0276 32 1 -0.3633 0.8874 -0.5184 33 1 -0.3633 -0.8926 -0.5094 34 1 1.9229 2.1197 -0.0004 35 1 6.1528 -0.1199 -0.1874 36 1 8.1302 1.4031 -0.1787 37 1 7.8049 5.0097 0.0650 38 1 9.5434 2.8855 0.7295 39 1 9.4527 3.0021 -1.0444 40 1 11.3297 4.3570 -0.2488 41 1 10.0551 5.4344 -0.8678 42 1 11.9259 6.3231 -0.5824 43 1 13.3888 8.2541 -0.2558 44 1 13.7246 10.8840 -1.0492 45 1 11.8404 8.7203 3.7399 46 1 10.3810 6.7918 3.3845 47 1 4.3988 -1.3901 0.0078 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078260686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:24 Heat of formation + Delta-G solvation = 105.278670 kcal Electronic energy + Delta-G solvation = -29482.774647 eV Core-core repulsion = 25246.267998 eV Total energy + Delta-G solvation = -4236.506649 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.30561 -41.51146 -40.54447 -38.47017 -37.19551 -35.23340 -34.81223 -33.58854 -33.01937 -31.56143 -31.33916 -30.60818 -29.20525 -27.70205 -26.67762 -25.51159 -24.78492 -23.70879 -22.85232 -22.04474 -21.74124 -21.50293 -19.26906 -18.95502 -18.71615 -18.40906 -18.03319 -17.14980 -16.60527 -16.47191 -16.33602 -16.25521 -15.97685 -15.75523 -15.32345 -15.21211 -14.97950 -14.69980 -14.52450 -14.12931 -13.97348 -13.84288 -13.77217 -13.69464 -13.58845 -13.34393 -13.19227 -12.80368 -12.72902 -12.53125 -12.33339 -12.21085 -11.95033 -11.73533 -11.64734 -11.54846 -11.21241 -11.14775 -10.86733 -10.45656 -10.40607 -9.79010 -9.55323 -8.90334 -8.59891 -8.56448 -6.22298 0.02174 0.09402 0.94744 0.96998 1.05777 1.39935 1.52544 1.52667 1.59290 1.83471 2.04575 2.23056 2.58515 2.72954 2.95100 3.32525 3.51802 3.71140 3.77168 3.84121 3.89593 3.97606 4.05048 4.17663 4.29978 4.31580 4.32582 4.40552 4.45013 4.49592 4.55720 4.70331 4.70886 4.72453 4.79626 4.93183 4.93988 5.03208 5.15964 5.19825 5.29101 5.37970 5.53702 5.58906 5.66978 5.98245 5.99845 6.04421 6.07255 6.25038 6.48516 6.56750 6.64986 6.79895 6.96021 7.10831 8.00382 8.36769 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.032787 B = 0.001253 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.783749 B =22337.568949 C =22562.350163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.375 5.375 3 C 0.094 3.906 4 C -0.211 4.211 5 C 0.093 3.907 6 C -0.067 4.067 7 C -0.170 4.170 8 C 0.324 3.676 9 N -0.714 5.714 10 C 0.137 3.863 11 C 0.045 3.955 12 O -0.331 6.331 13 C 0.004 3.996 14 C -0.174 4.174 15 C -0.154 4.154 16 C 0.053 3.947 17 C -0.501 4.501 18 H 0.074 0.926 19 C 0.036 3.964 20 N -0.831 5.831 21 Si 0.980 3.020 22 H -0.262 1.262 23 H -0.270 1.270 24 H -0.260 1.260 25 C -0.207 4.207 26 C -0.122 4.122 27 N -0.347 5.347 28 N -0.242 5.242 29 C 0.074 3.926 30 N -0.326 5.326 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.194 0.806 35 H 0.187 0.813 36 H 0.179 0.821 37 H 0.405 0.595 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.123 0.877 43 H 0.106 0.894 44 H 0.287 0.713 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.133 -22.813 -4.639 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.156 5.156 3 C -0.056 4.056 4 C -0.225 4.225 5 C -0.058 4.058 6 C -0.096 4.096 7 C -0.202 4.202 8 C 0.081 3.919 9 N -0.348 5.348 10 C 0.014 3.986 11 C -0.030 4.030 12 O -0.247 6.247 13 C -0.040 4.040 14 C -0.192 4.192 15 C -0.174 4.174 16 C 0.051 3.949 17 C -0.531 4.531 18 H 0.092 0.908 19 C -0.178 4.178 20 N -0.458 5.458 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.194 1.194 24 H -0.184 1.184 25 C -0.227 4.227 26 C -0.141 4.141 27 N -0.197 5.197 28 N -0.083 5.083 29 C -0.114 4.114 30 N -0.147 5.147 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.211 0.789 35 H 0.204 0.796 36 H 0.197 0.803 37 H 0.240 0.760 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.141 0.859 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.124 0.876 46 H 0.133 0.867 47 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -19.035 -22.555 -4.619 29.873 hybrid contribution 2.062 1.038 -0.190 2.316 sum -16.974 -21.517 -4.809 27.825 Atomic orbital electron populations 1.22267 0.71639 1.06196 1.04863 1.48760 1.08206 1.03149 1.55445 1.22955 0.90666 0.94275 0.97719 1.18403 0.90971 0.92668 1.20433 1.20521 0.93307 0.91121 1.00841 1.22463 0.90109 1.03250 0.93729 1.22127 1.02777 0.90770 1.04574 1.20326 0.89117 0.90349 0.92142 1.44556 1.02982 1.08342 1.78886 1.21682 0.77769 0.95036 1.04147 1.23023 1.00579 0.94529 0.84902 1.85844 1.60675 1.42363 1.35829 1.18601 0.97553 0.92376 0.95491 1.20836 1.00005 0.99988 0.98412 1.20917 1.01706 0.95830 0.98937 1.17958 0.91718 0.92932 0.92264 1.19724 1.27450 1.11370 0.94561 0.90818 1.26679 0.99024 0.98096 0.93999 1.69884 1.36512 1.36611 1.02796 0.85233 0.77840 0.77431 0.79380 1.18656 1.19424 1.18387 1.20777 1.00721 1.00751 1.00402 1.19872 1.01577 0.97080 0.95583 1.72806 0.95939 1.30241 1.20756 1.72775 1.22201 1.03635 1.09656 1.24388 0.95900 0.93419 0.97669 1.77219 1.02320 1.09386 1.25782 0.89403 0.86970 0.88486 0.78937 0.79560 0.80343 0.76005 0.89745 0.86599 0.89485 0.92285 0.85888 0.87576 0.90273 0.87638 0.86655 0.76615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.46 127.77 1.46 2.01 16 2 N -0.38 -5.65 4.00 -368.70 -1.48 -7.12 16 3 C 0.09 1.58 11.22 83.83 0.94 2.52 16 4 C -0.21 -3.87 6.06 -20.34 -0.12 -3.99 16 5 C 0.09 1.97 6.84 42.14 0.29 2.26 16 6 C -0.07 -1.00 9.70 22.69 0.22 -0.78 16 7 C -0.17 -2.79 9.40 22.61 0.21 -2.58 16 8 C 0.32 7.83 7.75 133.13 1.03 8.86 16 9 N -0.71 -16.57 5.68 -344.53 -1.96 -18.53 16 10 C 0.14 2.40 5.30 86.38 0.46 2.86 16 11 C 0.05 1.11 4.86 71.98 0.35 1.47 16 12 O -0.33 -11.63 10.07 -89.85 -0.90 -12.53 16 13 C 0.00 0.16 6.71 22.79 0.15 0.31 16 14 C -0.17 -7.68 8.96 22.11 0.20 -7.49 16 15 C -0.15 -7.96 8.64 22.48 0.19 -7.76 16 16 C 0.05 2.88 5.57 -21.28 -0.12 2.77 16 17 C -0.50 -27.12 9.04 23.40 0.21 -26.91 16 18 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 19 C 0.04 1.81 5.13 85.23 0.44 2.25 16 20 N -0.83 -43.35 10.96 21.82 0.24 -43.11 16 21 Si 0.98 38.21 29.60 68.60 2.03 40.24 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 25 C -0.21 -10.25 9.74 22.48 0.22 -10.03 16 26 C -0.12 -5.53 9.92 22.11 0.22 -5.31 16 27 N -0.35 -10.40 11.53 -55.01 -0.63 -11.03 16 28 N -0.24 -6.72 11.23 -48.31 -0.54 -7.26 16 29 C 0.07 1.11 11.43 85.52 0.98 2.09 16 30 N -0.33 -5.90 12.54 -56.44 -0.71 -6.61 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.19 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.19 1.09 7.16 -2.91 -0.02 1.07 16 36 H 0.18 1.63 6.83 -2.91 -0.02 1.61 16 37 H 0.40 10.92 8.60 -92.71 -0.80 10.12 16 38 H 0.08 1.34 7.95 -2.39 -0.02 1.32 16 39 H 0.12 1.24 7.97 -2.39 -0.02 1.22 16 40 H 0.09 1.91 7.63 -2.39 -0.02 1.89 16 41 H 0.06 1.51 7.66 -2.39 -0.02 1.49 16 42 H 0.12 4.59 6.27 -2.91 -0.02 4.57 16 43 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 44 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 45 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 46 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 47 H 0.22 1.49 7.41 -2.91 -0.02 1.47 16 Total: -1.00 -74.51 403.10 3.61 -70.89 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.23 Total: 32.54 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 7.33 Total: -37.48 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -5.08 Total: -93.66 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.90 Total: -12.53 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -74.51 3.61 -70.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078260686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.172 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds