Wall clock time and date at job start Tue Mar 31 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21292 * 120.00296 * 2 1 4 4 N 1.34777 * 119.99665 * 180.02562 * 2 1 3 5 5 C 1.40090 * 120.00094 * 175.43612 * 4 2 1 6 6 C 1.38880 * 119.99929 * 215.08240 * 5 4 2 7 7 C 1.38051 * 120.02164 * 179.72203 * 6 5 4 8 8 C 1.38842 * 120.01233 * 0.55900 * 7 6 5 9 9 N 1.40166 * 120.00647 * 179.74417 * 8 7 6 10 10 C 1.34780 * 120.00084 * 34.73919 * 9 8 7 11 11 O 1.21598 * 119.99619 * 355.47475 * 10 9 8 12 12 N 1.34773 * 120.00302 * 175.47316 * 10 9 8 13 13 C 1.46503 * 120.00015 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46732 * 90.00431 * 13 12 10 15 15 H 1.07996 * 120.00305 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99621 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99983 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00362 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47464 * 89.99961 * 18 16 14 20 20 H 1.48500 * 109.47416 * 210.00305 * 18 16 14 21 21 H 1.48504 * 109.47043 * 330.00114 * 18 16 14 22 22 C 1.46500 * 119.99840 * 0.02562 * 12 10 9 23 23 C 1.53003 * 109.46927 * 269.99664 * 22 12 10 24 24 C 1.52996 * 117.49962 * 243.62567 * 23 22 12 25 25 C 1.52999 * 60.00120 * 252.50952 * 24 23 22 26 26 C 1.38949 * 119.99195 * 359.46405 * 8 7 6 27 27 Cl 1.73595 * 120.00869 * 180.27481 * 26 8 7 28 28 C 1.38158 * 119.97553 * 0.25691 * 26 8 7 29 29 H 1.08996 * 109.46815 * 270.00104 * 1 2 3 30 30 H 1.09003 * 109.46742 * 29.99921 * 1 2 3 31 31 H 1.09001 * 109.47309 * 149.99976 * 1 2 3 32 32 H 0.97005 * 119.99905 * 355.43822 * 4 2 1 33 33 H 1.08001 * 119.98538 * 0.02856 * 6 5 4 34 34 H 1.07999 * 119.99874 * 180.30028 * 7 6 5 35 35 H 0.97002 * 120.00273 * 214.74422 * 9 8 7 36 36 H 1.08995 * 109.47358 * 330.00406 * 13 12 10 37 37 H 1.08998 * 109.47352 * 210.00117 * 13 12 10 38 38 H 0.96999 * 120.00124 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47247 * 29.99528 * 22 12 10 40 40 H 1.09001 * 109.47130 * 150.00086 * 22 12 10 41 41 H 1.09003 * 115.54652 * 29.33234 * 23 22 12 42 42 H 1.09007 * 117.49979 * 359.97438 * 24 23 22 43 43 H 1.09000 * 117.50171 * 145.02021 * 24 23 22 44 44 H 1.08999 * 117.49866 * 252.51591 * 25 24 23 45 45 H 1.08998 * 117.49871 * 107.48396 * 25 24 23 46 46 H 1.08001 * 120.00157 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5784 -1.1692 -0.0971 6 6 4.2248 -2.1809 -0.7953 7 6 5.6016 -2.1802 -0.8956 8 6 6.3416 -1.1743 -0.2886 9 7 7.7399 -1.1767 -0.3860 10 6 8.3363 -1.6177 -1.5113 11 8 7.6663 -2.0899 -2.4094 12 7 9.6753 -1.5353 -1.6410 13 6 10.3236 -2.0153 -2.8640 14 6 10.4105 -0.8890 -3.8616 15 1 10.0213 0.0865 -3.6100 16 6 10.9859 -1.1043 -5.0959 17 7 11.0613 -0.1216 -5.9667 18 14 11.6583 -2.7918 -5.5315 19 1 10.5880 -3.6027 -6.1655 20 1 12.7931 -2.6433 -6.4777 21 1 12.1285 -3.4709 -4.2974 22 6 10.4825 -0.9669 -0.5587 23 6 10.6261 0.5419 -0.7679 24 6 12.0327 1.0899 -1.0168 25 6 11.3397 1.3418 0.3238 26 6 5.6956 -0.1622 0.4106 27 17 6.6200 1.0996 1.1636 28 6 4.3173 -0.1601 0.5058 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6981 -2.0060 0.0659 33 1 3.6497 -2.9657 -1.2641 34 1 6.1036 -2.9644 -1.4428 35 1 8.2784 -0.8610 0.3566 36 1 9.7398 -2.8321 -3.2882 37 1 11.3269 -2.3700 -2.6282 38 1 11.4664 -0.2730 -6.8350 39 1 9.9938 -1.1563 0.3971 40 1 11.4695 -1.4294 -0.5601 41 1 9.7982 1.0255 -1.2865 42 1 12.8560 0.3755 -1.0309 43 1 12.1306 1.9341 -1.6992 44 1 10.9814 2.3517 0.5232 45 1 11.7068 0.7931 1.1911 46 1 3.8147 0.6262 1.0495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078566768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:38 Heat of formation + Delta-G solvation = -23.534332 kcal Electronic energy + Delta-G solvation = -30556.969367 eV Core-core repulsion = 26280.151366 eV Total energy + Delta-G solvation = -4276.818000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.98478 -41.26631 -39.63066 -38.43147 -37.59004 -36.60871 -36.00902 -35.02532 -34.37464 -31.89177 -31.40925 -30.37195 -28.79235 -27.60933 -25.02133 -24.26699 -23.24903 -23.15008 -22.02441 -21.72568 -20.79704 -19.47947 -19.03061 -18.94587 -18.51858 -17.93081 -16.89887 -16.74408 -16.55499 -16.16301 -15.97607 -15.86651 -15.68349 -15.13220 -14.98899 -14.86345 -14.69051 -14.51209 -14.28724 -14.16840 -13.74693 -13.45047 -13.29274 -13.19935 -13.14228 -12.88504 -12.64959 -12.53996 -12.45596 -12.30611 -12.12662 -11.97302 -11.88814 -11.64861 -11.37487 -11.15567 -10.99635 -10.80899 -10.70789 -10.55553 -9.87848 -9.53769 -8.78291 -8.26234 -6.29492 -0.03677 0.18196 0.99353 1.35018 1.39924 1.46748 1.51184 1.56840 2.03600 2.21011 2.35660 2.64916 2.80649 3.00751 3.08983 3.70241 3.82337 3.87832 3.99522 4.03252 4.14786 4.18983 4.23067 4.35508 4.49302 4.53057 4.59949 4.69127 4.70404 4.78944 4.80682 4.83987 4.92688 5.04844 5.09385 5.10802 5.17348 5.28999 5.30650 5.31646 5.47442 5.50228 5.59142 5.86258 5.90158 6.33051 6.43909 6.72372 6.90708 7.14042 7.29671 7.52551 8.91077 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.002879 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.102763 B = 9724.652396 C =11186.040275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.501 3.499 3 O -0.579 6.579 4 N -0.655 5.655 5 C 0.131 3.869 6 C -0.105 4.105 7 C -0.106 4.106 8 C 0.153 3.847 9 N -0.674 5.674 10 C 0.701 3.299 11 O -0.609 6.609 12 N -0.603 5.603 13 C 0.241 3.759 14 C -0.518 4.518 15 H 0.026 0.974 16 C 0.008 3.992 17 N -0.950 5.950 18 Si 0.946 3.054 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.233 1.233 22 C 0.144 3.856 23 C -0.177 4.177 24 C -0.177 4.177 25 C -0.146 4.146 26 C -0.059 4.059 27 Cl -0.059 7.059 28 C -0.103 4.103 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.434 0.566 33 H 0.168 0.832 34 H 0.141 0.859 35 H 0.415 0.585 36 H 0.025 0.975 37 H 0.055 0.945 38 H 0.265 0.735 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.897 -6.157 20.994 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.292 3.708 3 O -0.458 6.458 4 N -0.303 5.303 5 C 0.035 3.965 6 C -0.126 4.126 7 C -0.127 4.127 8 C 0.055 3.945 9 N -0.325 5.325 10 C 0.403 3.597 11 O -0.489 6.489 12 N -0.336 5.336 13 C 0.119 3.881 14 C -0.556 4.556 15 H 0.044 0.956 16 C -0.189 4.189 17 N -0.591 5.591 18 Si 0.769 3.231 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.156 1.156 22 C 0.021 3.979 23 C -0.197 4.197 24 C -0.214 4.214 25 C -0.184 4.184 26 C -0.089 4.089 27 Cl -0.030 7.030 28 C -0.124 4.124 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.274 0.726 33 H 0.186 0.814 34 H 0.158 0.842 35 H 0.255 0.745 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.143 0.857 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.765 -5.605 20.218 26.243 hybrid contribution 0.698 0.137 -0.773 1.051 sum -15.067 -5.468 19.445 25.199 Atomic orbital electron populations 1.21922 0.86403 1.06730 1.06825 1.22032 0.92847 0.82360 0.73599 1.90753 1.71755 1.33261 1.50071 1.43543 1.03378 1.11072 1.72324 1.17578 0.84286 0.96493 0.98162 1.21133 0.93417 1.00054 0.97996 1.21202 0.94164 0.97882 0.99493 1.17490 0.82728 0.94311 0.99921 1.42631 1.04659 1.67872 1.17316 1.15977 0.82672 0.79210 0.81842 1.90840 1.63507 1.52551 1.41996 1.47131 1.03712 1.63275 1.19455 1.19335 0.93023 0.93935 0.81813 1.21488 1.37880 0.96884 0.99397 0.95567 1.25819 0.96148 1.01111 0.95807 1.70075 1.46768 1.34510 1.07779 0.85754 0.78142 0.79486 0.79757 1.20306 1.20668 1.15619 1.21309 0.97213 0.90648 0.88720 1.22557 0.96442 0.95766 1.04953 1.22882 0.95542 1.03150 0.99835 1.23061 1.01961 1.00997 0.92353 1.20562 0.92328 0.91356 1.04663 1.98349 1.73442 1.50755 1.80467 1.20922 0.90398 1.00435 1.00688 0.86332 0.88867 0.86704 0.72563 0.81429 0.84175 0.74464 0.95700 0.92672 0.92637 0.88398 0.88183 0.91794 0.87891 0.91343 0.88705 0.85690 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 10.31 71.24 0.73 -0.25 16 2 C 0.50 8.67 7.78 87.66 0.68 9.35 16 3 O -0.58 -16.65 14.54 -3.07 -0.04 -16.70 16 4 N -0.66 -9.40 5.34 -303.38 -1.62 -11.02 16 5 C 0.13 2.95 6.30 38.12 0.24 3.19 16 6 C -0.11 -2.38 9.96 22.38 0.22 -2.16 16 7 C -0.11 -3.22 8.69 22.37 0.19 -3.03 16 8 C 0.15 4.91 6.31 38.12 0.24 5.15 16 9 N -0.67 -22.42 4.93 -316.95 -1.56 -23.98 16 10 C 0.70 29.36 8.12 179.05 1.45 30.82 16 11 O -0.61 -30.28 13.34 -4.02 -0.05 -30.34 16 12 N -0.60 -24.44 2.46 -844.18 -2.07 -26.52 16 13 C 0.24 11.50 4.27 85.63 0.37 11.87 16 14 C -0.52 -30.29 9.94 25.60 0.25 -30.04 16 15 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 16 C 0.01 0.48 5.47 84.65 0.46 0.94 16 17 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 18 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.23 -9.58 6.54 99.48 0.65 -8.93 16 22 C 0.14 4.32 5.54 86.38 0.48 4.79 16 23 C -0.18 -5.81 6.01 -10.79 -0.06 -5.88 16 24 C -0.18 -5.57 10.18 30.59 0.31 -5.26 16 25 C -0.15 -3.50 10.25 30.59 0.31 -3.19 16 26 C -0.06 -1.75 6.33 22.42 0.14 -1.61 16 27 Cl -0.06 -1.62 27.95 -2.72 -0.08 -1.70 16 28 C -0.10 -2.84 8.47 22.40 0.19 -2.65 16 29 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.43 2.20 8.82 -92.70 -0.82 1.38 16 33 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.14 4.78 6.19 -2.91 -0.02 4.76 16 35 H 0.42 11.55 5.77 -92.71 -0.54 11.01 16 36 H 0.02 1.26 6.85 -2.39 -0.02 1.24 16 37 H 0.06 2.37 6.95 -2.39 -0.02 2.36 16 38 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.10 2.21 6.30 -2.39 -0.02 2.20 16 40 H 0.10 2.66 7.63 -2.39 -0.02 2.64 16 41 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.10 2.99 8.03 -2.38 -0.02 2.97 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.14 4.14 6.22 -2.91 -0.02 4.12 16 Total: -1.00 -86.44 398.86 2.61 -83.83 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.36 Total: 28.93 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.22 Total: 12.06 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -4.96 Total: -122.24 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -0.10 Total: -47.03 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -86.44 2.61 -83.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078566768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.291 kcal (2) G-P(sol) polarization free energy of solvation -86.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds