Wall clock time and date at job start Tue Mar 31 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47110 * 2 1 4 4 C 1.46497 * 119.99896 * 269.99913 * 3 2 1 5 5 C 1.50693 * 109.47178 * 269.99849 * 4 3 2 6 6 H 1.08001 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00058 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99666 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00091 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47461 * 59.99777 * 9 7 5 11 11 H 1.48501 * 109.47303 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46938 * 299.99975 * 9 7 5 13 13 C 1.34773 * 119.99784 * 90.00024 * 3 2 1 14 14 O 1.21592 * 119.99806 * 180.02562 * 13 3 2 15 15 N 1.34779 * 120.00386 * 359.97438 * 13 3 2 16 16 C 1.40131 * 120.00153 * 185.59824 * 15 13 3 17 17 C 1.38841 * 120.01425 * 32.93395 * 16 15 13 18 18 C 1.38091 * 119.99222 * 180.02562 * 17 16 15 19 19 C 1.38742 * 120.00930 * 0.02562 * 18 17 16 20 20 O 1.35952 * 119.98789 * 179.70214 * 19 18 17 21 21 C 1.35893 * 118.00101 * 93.44807 * 20 19 18 22 22 C 1.38885 * 119.98480 * 354.70463 * 21 20 19 23 23 C 1.38240 * 120.25312 * 179.97438 * 22 21 20 24 24 C 1.38005 * 120.21121 * 359.97438 * 23 22 21 25 25 C 1.39630 * 119.96484 * 0.02562 * 24 23 22 26 26 C 1.43193 * 120.12515 * 180.02562 * 25 24 23 27 27 N 9.71518 * 143.16274 * 193.34176 * 16 1 2 28 28 C 1.38472 * 119.98531 * 174.42524 * 21 20 19 29 29 C 1.38750 * 120.02290 * 359.97438 * 19 18 17 30 30 C 1.38082 * 120.01231 * 0.02562 * 29 19 18 31 31 H 1.09000 * 109.47531 * 60.00020 * 1 2 3 32 32 H 1.09004 * 109.46871 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47334 * 299.99836 * 1 2 3 34 34 H 1.08997 * 109.47143 * 239.99730 * 2 1 3 35 35 H 1.09000 * 109.47008 * 120.00025 * 2 1 3 36 36 H 1.08999 * 109.46951 * 30.00355 * 4 3 2 37 37 H 1.08999 * 109.46609 * 149.99623 * 4 3 2 38 38 H 0.97005 * 119.99596 * 180.02562 * 8 7 5 39 39 H 0.96998 * 120.00009 * 5.59247 * 15 13 3 40 40 H 1.08002 * 120.00817 * 0.02562 * 17 16 15 41 41 H 1.07996 * 119.99216 * 180.02562 * 18 17 16 42 42 H 1.08006 * 119.87689 * 359.97438 * 22 21 20 43 43 H 1.08001 * 119.89407 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.01843 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.10416 * 0.02562 * 28 21 20 46 46 H 1.08001 * 119.99023 * 179.97438 * 29 19 18 47 47 H 1.07995 * 120.00493 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3896 -2.8779 8 7 3.3490 3.1257 -3.6181 9 14 5.9130 2.0956 -3.4175 10 1 6.1403 0.6388 -3.5947 11 1 6.1606 2.7957 -4.7035 12 1 6.8409 2.6190 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6478 3.1631 1.1672 15 7 2.0178 1.3814 2.3344 16 6 2.1381 2.0767 3.5451 17 6 1.8107 3.4246 3.6073 18 6 1.9299 4.1095 4.8005 19 6 2.3773 3.4511 5.9368 20 8 2.5003 4.1273 7.1098 21 6 1.4516 4.1021 7.9737 22 6 0.2600 3.4936 7.6014 23 6 -0.8101 3.4643 8.4760 24 6 -0.7014 4.0393 9.7258 25 6 0.4924 4.6534 10.1095 26 6 0.6092 5.2506 11.4057 27 7 0.7001 5.7258 12.4333 28 6 1.5735 4.6780 9.2271 29 6 2.7046 2.1042 5.8752 30 6 2.5858 1.4184 4.6826 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.5817 1.6877 -2.0283 37 1 2.0954 3.1410 -1.1383 38 1 3.6749 3.5155 -4.4444 39 1 1.7725 0.4429 2.3365 40 1 1.4628 3.9373 2.7228 41 1 1.6748 5.1578 4.8490 42 1 0.1690 3.0416 6.6247 43 1 -1.7339 2.9892 8.1806 44 1 -1.5395 4.0149 10.4065 45 1 2.5009 5.1479 9.5195 46 1 3.0532 1.5923 6.7600 47 1 2.8402 0.3699 4.6348 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078579883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:02 Heat of formation + Delta-G solvation = 20.506743 kcal Electronic energy + Delta-G solvation = -30718.367814 eV Core-core repulsion = 26445.892428 eV Total energy + Delta-G solvation = -4272.475386 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -42.06367 -41.46032 -39.85762 -38.69993 -37.35465 -36.97937 -35.63266 -34.67351 -32.36828 -32.04938 -31.61799 -31.53292 -29.99202 -28.52659 -25.49534 -24.90517 -24.43399 -24.01357 -23.81350 -22.84619 -20.92283 -20.54369 -19.39970 -18.57364 -18.35237 -18.13184 -17.57564 -17.08632 -17.04570 -16.83276 -16.33689 -15.93838 -15.71610 -15.27379 -15.15367 -15.02967 -14.78432 -14.63004 -14.52121 -14.51254 -14.26445 -14.11895 -14.00983 -13.75738 -13.67739 -13.36949 -13.24797 -13.08456 -12.85268 -12.74788 -12.67547 -12.51485 -12.23832 -12.17956 -11.98283 -11.88440 -11.74040 -11.28726 -10.97822 -10.61971 -10.06625 -9.98576 -9.56026 -9.34826 -8.95729 -8.20128 -6.34684 -0.28823 0.02842 0.33778 0.37566 1.37770 1.41889 1.48602 1.51530 1.70313 1.88794 2.01783 2.24091 2.40437 2.76805 2.84107 2.92343 3.00073 3.10093 3.81705 3.88932 3.95831 4.06701 4.07126 4.15407 4.20015 4.32153 4.38632 4.41191 4.45902 4.55734 4.57058 4.78876 4.87312 4.97815 4.97965 5.03548 5.06349 5.16415 5.21391 5.31224 5.31911 5.37000 5.38105 5.38886 5.45442 5.58240 5.65058 5.80728 5.90569 6.07603 6.10176 6.37347 6.58463 6.74010 7.05717 7.32265 7.63215 8.85865 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.001722 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.980492 B =16254.615821 C =16993.518498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.611 5.611 4 C 0.279 3.721 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.694 3.306 14 O -0.619 6.619 15 N -0.675 5.675 16 C 0.169 3.831 17 C -0.129 4.129 18 C -0.103 4.103 19 C 0.050 3.950 20 O -0.264 6.264 21 C 0.107 3.893 22 C -0.162 4.162 23 C -0.075 4.075 24 C -0.093 4.093 25 C -0.002 4.002 26 C 0.282 3.718 27 N -0.459 5.459 28 C -0.104 4.104 29 C -0.093 4.093 30 C -0.127 4.127 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.028 0.972 37 H -0.001 1.001 38 H 0.267 0.733 39 H 0.421 0.579 40 H 0.113 0.887 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.144 0.856 46 H 0.160 0.840 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 -8.804 23.525 27.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.345 5.345 4 C 0.157 3.843 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.789 3.211 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.396 3.604 14 O -0.499 6.499 15 N -0.326 5.326 16 C 0.073 3.927 17 C -0.150 4.150 18 C -0.122 4.122 19 C 0.007 3.993 20 O -0.176 6.176 21 C 0.064 3.936 22 C -0.181 4.181 23 C -0.092 4.092 24 C -0.113 4.113 25 C -0.005 4.005 26 C -0.033 4.033 27 N -0.135 5.135 28 C -0.125 4.125 29 C -0.112 4.112 30 C -0.147 4.147 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.075 0.925 39 H 0.262 0.738 40 H 0.131 0.869 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.184 0.816 44 H 0.176 0.824 45 H 0.161 0.839 46 H 0.178 0.822 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.033 -7.103 24.845 27.719 hybrid contribution 0.889 -0.027 -1.504 1.748 sum -9.144 -7.129 23.340 26.062 Atomic orbital electron populations 1.22166 0.94427 1.03633 1.01724 1.21734 0.95379 0.81268 1.03945 1.47495 1.66994 1.15286 1.04712 1.18636 0.95152 0.91396 0.79074 1.21710 0.98061 1.32060 1.06459 0.92916 1.25796 1.02105 0.94527 0.96479 1.70036 1.37675 1.34114 1.14752 0.85523 0.79326 0.79022 0.77255 1.18401 1.20464 1.20651 1.16098 0.78649 0.84434 0.81195 1.90887 1.53412 1.19175 1.86448 1.42702 1.72760 1.14686 1.02409 1.17908 0.97203 0.92215 0.85414 1.21014 1.01826 0.94383 0.97781 1.21210 0.98710 1.00775 0.91550 1.18524 1.05161 0.91580 0.84041 1.84422 1.37679 1.68952 1.26586 1.19095 0.87218 0.97558 0.89685 1.21773 0.92851 1.01562 1.01956 1.21226 0.99016 0.97104 0.91892 1.21410 0.96098 0.96323 0.97496 1.15618 0.96031 1.02274 0.86624 1.25736 0.92488 0.92483 0.92575 1.81293 1.08763 1.10581 1.12868 1.20347 0.99592 1.01877 0.90658 1.21340 0.98665 0.92096 0.99114 1.20974 1.01105 1.02148 0.90487 0.94103 0.88343 0.92473 0.90304 0.88647 0.95413 0.98312 0.92456 0.73829 0.86944 0.84701 0.84426 0.81611 0.82443 0.83863 0.82216 0.81767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 10.24 71.98 0.74 -2.78 16 2 C 0.10 2.69 5.94 86.38 0.51 3.20 16 3 N -0.61 -24.49 2.46 -844.22 -2.07 -26.56 16 4 C 0.28 14.57 5.16 85.63 0.44 15.01 16 5 C -0.54 -30.70 9.39 25.60 0.24 -30.46 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 9 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.69 27.93 8.02 179.05 1.44 29.36 16 14 O -0.62 -31.48 13.59 -4.01 -0.05 -31.53 16 15 N -0.67 -18.62 5.23 -317.06 -1.66 -20.28 16 16 C 0.17 4.36 6.29 38.10 0.24 4.60 16 17 C -0.13 -3.80 8.65 22.38 0.19 -3.61 16 18 C -0.10 -2.51 9.84 22.36 0.22 -2.29 16 19 C 0.05 1.02 3.96 22.51 0.09 1.11 16 20 O -0.26 -5.28 9.98 -36.38 -0.36 -5.64 16 21 C 0.11 1.68 6.66 22.48 0.15 1.83 16 22 C -0.16 -1.99 9.19 22.43 0.21 -1.78 16 23 C -0.07 -0.56 10.02 22.21 0.22 -0.34 16 24 C -0.09 -0.74 9.75 22.55 0.22 -0.52 16 25 C 0.00 -0.02 5.73 -21.38 -0.12 -0.15 16 26 C 0.28 4.59 15.33 88.33 1.35 5.94 16 27 N -0.46 -9.93 18.54 19.00 0.35 -9.58 16 28 C -0.10 -1.44 9.70 22.65 0.22 -1.22 16 29 C -0.09 -1.57 9.95 22.36 0.22 -1.35 16 30 C -0.13 -2.26 9.96 22.38 0.22 -2.04 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 35 H 0.10 1.84 6.29 -2.39 -0.02 1.82 16 36 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 37 H 0.00 -0.08 7.42 -2.39 -0.02 -0.09 16 38 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 39 H 0.42 8.09 6.51 -92.71 -0.60 7.48 16 40 H 0.11 4.10 6.39 -2.91 -0.02 4.08 16 41 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.14 1.74 6.68 -2.91 -0.02 1.72 16 43 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 47 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -78.36 411.47 6.20 -72.16 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.42 Total: 14.32 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 7.27 Total: 15.56 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -3.09 Total: -111.27 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.42 Total: -37.17 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -78.36 6.20 -72.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078579883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.666 kcal (2) G-P(sol) polarization free energy of solvation -78.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds