Wall clock time and date at job start Tue Mar 31 2020 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86802 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46798 * 300.00298 * 3 2 1 6 6 H 1.48500 * 109.47282 * 60.00084 * 3 2 1 7 7 C 1.39902 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99848 * 197.34955 * 7 2 1 9 9 C 1.41152 * 120.00095 * 17.34031 * 7 2 1 10 10 C 1.40870 * 120.16349 * 205.81693 * 9 7 2 11 11 C 1.36378 * 119.82937 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16670 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.83328 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99496 * 147.34608 * 13 12 11 15 15 O 1.21283 * 120.00451 * 354.77084 * 14 13 12 16 16 C 1.50706 * 119.99527 * 174.76943 * 14 13 12 17 17 C 1.52999 * 109.47078 * 183.91992 * 16 14 13 18 18 C 1.50700 * 110.73328 * 60.43122 * 17 16 14 19 19 O 1.20818 * 120.00329 * 237.51330 * 18 17 16 20 20 O 1.34231 * 119.99378 * 57.51165 * 18 17 16 21 21 C 1.54348 * 110.81798 * 297.02926 * 17 16 14 22 22 C 1.51374 * 105.17030 * 215.43008 * 21 17 16 23 23 C 1.38493 * 130.39069 * 197.16962 * 22 21 17 24 24 C 1.38106 * 120.21667 * 180.30052 * 23 22 21 25 25 C 1.38255 * 119.93025 * 359.40226 * 24 23 22 26 26 C 1.38104 * 119.93420 * 0.61329 * 25 24 23 27 27 C 1.38218 * 109.75660 * 17.18417 * 22 21 17 28 28 C 1.51365 * 109.75855 * 0.02562 * 27 22 21 29 29 C 1.39482 * 120.33180 * 0.25566 * 12 11 10 30 30 C 1.36368 * 120.17117 * 359.47856 * 29 12 11 31 31 H 0.97001 * 119.99942 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.08735 * 0.02562 * 10 9 7 33 33 H 1.07997 * 119.91964 * 179.97438 * 11 10 9 34 34 H 0.96998 * 120.00286 * 327.34886 * 13 12 11 35 35 H 1.08991 * 109.47294 * 63.91656 * 16 14 13 36 36 H 1.09006 * 109.46602 * 303.91696 * 16 14 13 37 37 H 0.96704 * 116.99786 * 180.02562 * 20 18 17 38 38 H 1.09006 * 110.30625 * 96.50819 * 21 17 16 39 39 H 1.08996 * 110.30499 * 334.35175 * 21 17 16 40 40 H 1.08005 * 119.89498 * 0.02562 * 23 22 21 41 41 H 1.08000 * 120.03303 * 179.69799 * 24 23 22 42 42 H 1.07999 * 120.03542 * 180.27279 * 25 24 23 43 43 H 1.08003 * 119.89437 * 179.66315 * 26 25 24 44 44 H 1.09004 * 110.29847 * 223.88841 * 28 27 22 45 45 H 1.08995 * 110.30655 * 101.73340 * 28 27 22 46 46 H 1.07999 * 119.91453 * 179.74810 * 29 12 11 47 47 H 1.08004 * 120.09140 * 180.26081 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0514 -1.2330 0.2784 9 6 1.3506 -2.4061 -0.3654 10 6 1.8118 -3.6450 0.1210 11 6 1.1716 -4.7950 -0.2363 12 6 0.0631 -4.7464 -1.0815 13 7 -0.5850 -5.9248 -1.4423 14 6 -1.9155 -5.9233 -1.6573 15 8 -2.5631 -4.9201 -1.4451 16 6 -2.5986 -7.1685 -2.1616 17 6 -4.0786 -6.8723 -2.4123 18 6 -4.2379 -5.7878 -3.4464 19 8 -4.8464 -4.7797 -3.1759 20 8 -3.7035 -5.9418 -4.6681 21 6 -4.7910 -6.4866 -1.0986 22 6 -6.1833 -7.0688 -1.2173 23 6 -7.3387 -6.7836 -0.5089 24 6 -8.5111 -7.4566 -0.7915 25 6 -8.5355 -8.4094 -1.7929 26 6 -7.3842 -8.6954 -2.5002 27 6 -6.2060 -8.0260 -2.2141 28 6 -4.8305 -8.1530 -2.8330 29 6 -0.3958 -3.5239 -1.5718 30 6 0.2307 -2.3653 -1.2190 31 1 -0.4850 0.8401 0.0004 32 1 2.6702 -3.6842 0.7752 33 1 1.5242 -5.7457 0.1355 34 1 -0.0790 -6.7467 -1.5388 35 1 -2.5073 -7.9596 -1.4175 36 1 -2.1294 -7.4888 -3.0919 37 1 -3.8316 -5.2189 -5.2976 38 1 -4.8417 -5.4022 -1.0000 39 1 -4.2711 -6.9209 -0.2447 40 1 -7.3217 -6.0357 0.2701 41 1 -9.4092 -7.2353 -0.2339 42 1 -9.4525 -8.9335 -2.0183 43 1 -7.4027 -9.4437 -3.2787 44 1 -4.9079 -8.2061 -3.9190 45 1 -4.3215 -9.0356 -2.4457 46 1 -1.2522 -3.4946 -2.2291 47 1 -0.1283 -1.4190 -1.5961 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078733082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:36 Heat of formation + Delta-G solvation = -79.805382 kcal Electronic energy + Delta-G solvation = -32173.487033 eV Core-core repulsion = 27864.369035 eV Total energy + Delta-G solvation = -4309.117998 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 4.28 seconds Orbital eigenvalues (eV) -41.36576 -39.53535 -39.34232 -37.37376 -36.25445 -35.78725 -34.44611 -32.98502 -31.56203 -31.49997 -29.51994 -29.10038 -27.56883 -27.11356 -24.85709 -24.27550 -22.05629 -21.49264 -21.20126 -21.06910 -19.92881 -19.42736 -17.85622 -17.34463 -17.22390 -16.55109 -16.44347 -16.32092 -15.52816 -15.22608 -15.20890 -14.93305 -14.62330 -14.20171 -13.97225 -13.68708 -13.38888 -13.21939 -13.18603 -12.95325 -12.86460 -12.67790 -12.29427 -12.14533 -11.85608 -11.83703 -11.70991 -11.52436 -11.35464 -11.30934 -11.14166 -11.11502 -10.93107 -10.91693 -10.53002 -10.28844 -9.94891 -9.83822 -9.45475 -9.13835 -8.94187 -8.69430 -8.64633 -7.53469 -7.00691 -6.73303 -4.29166 1.19571 1.26327 2.36259 2.53844 2.96427 2.99008 3.07685 3.09786 3.13689 3.35311 3.54639 3.63161 3.93922 4.11020 4.22615 4.56880 4.64775 4.71398 4.86400 4.88320 4.91073 5.08102 5.21038 5.29587 5.38345 5.40996 5.43775 5.53272 5.62643 5.70285 5.77423 5.86278 5.97752 6.12986 6.22258 6.29636 6.36738 6.37428 6.52276 6.61157 6.78334 6.86494 6.96939 7.03785 7.14656 7.28260 7.58229 7.65782 7.95175 8.01776 8.05302 8.19004 8.30586 8.62254 8.74617 8.88460 8.99739 10.19727 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002196 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.031575 B =12748.330959 C =13290.443767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.106 3.894 10 C -0.215 4.215 11 C -0.105 4.105 12 C -0.006 4.006 13 N -0.649 5.649 14 C 0.487 3.513 15 O -0.514 6.514 16 C -0.129 4.129 17 C -0.027 4.027 18 C 0.494 3.506 19 O -0.486 6.486 20 O -0.521 6.521 21 C -0.067 4.067 22 C -0.082 4.082 23 C -0.104 4.104 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.104 4.104 27 C -0.109 4.109 28 C -0.068 4.068 29 C -0.084 4.084 30 C -0.155 4.155 31 H 0.281 0.719 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.394 0.606 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.409 0.591 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -18.175 -6.319 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.103 3.897 10 C -0.235 4.235 11 C -0.125 4.125 12 C -0.098 4.098 13 N -0.292 5.292 14 C 0.273 3.727 15 O -0.390 6.390 16 C -0.169 4.169 17 C -0.028 4.028 18 C 0.334 3.666 19 O -0.371 6.371 20 O -0.334 6.334 21 C -0.103 4.103 22 C -0.082 4.082 23 C -0.122 4.122 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.122 4.122 27 C -0.109 4.109 28 C -0.105 4.105 29 C -0.104 4.104 30 C -0.175 4.175 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.227 0.773 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.268 0.732 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.992 -17.318 -5.808 21.850 hybrid contribution 0.457 0.843 -0.337 1.017 sum -11.535 -16.474 -6.145 21.029 Atomic orbital electron populations 1.69870 1.07545 1.29256 1.34535 1.25947 0.94731 1.01378 0.92412 0.86278 0.80930 0.81032 0.78585 1.18395 1.19704 1.19991 1.19566 0.97943 0.91234 1.40141 0.90337 1.17672 0.91114 0.92113 0.88755 1.20547 1.04029 0.92552 1.06413 1.20035 0.97039 0.97194 0.98198 1.17144 0.99783 0.85041 1.07868 1.42951 1.07071 1.11185 1.68023 1.20449 0.82616 0.89971 0.79664 1.90813 1.63813 1.34280 1.50073 1.21774 0.92738 0.98138 1.04237 1.20694 0.95900 0.92754 0.93477 1.22671 0.75266 0.87252 0.81364 1.90714 1.38228 1.29136 1.78978 1.84443 1.73624 1.50963 1.24344 1.21144 0.90017 1.04561 0.94626 1.20666 0.95443 0.96232 0.95833 1.20678 0.91684 0.99871 0.99994 1.21055 0.97740 0.96695 0.98066 1.20997 0.97896 0.98806 0.96748 1.20552 0.91664 0.99901 1.00121 1.20498 0.94813 0.97631 0.97931 1.21087 0.91571 0.96245 1.01560 1.20400 0.98833 0.91628 0.99559 1.20958 0.99146 0.96663 1.00685 0.90799 0.88651 0.89226 0.77268 0.87413 0.87562 0.73216 0.87067 0.89052 0.85964 0.85918 0.86001 0.86295 0.89525 0.88353 0.88151 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.06 11.01 55.55 0.61 -20.45 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.24 9.03 -37.85 -0.34 -12.58 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.11 2.85 5.56 -106.80 -0.59 2.26 16 10 C -0.22 -5.20 9.74 -39.26 -0.38 -5.58 16 11 C -0.10 -2.26 9.89 -39.79 -0.39 -2.65 16 12 C -0.01 -0.14 6.30 -83.57 -0.53 -0.66 16 13 N -0.65 -10.79 5.31 -9.73 -0.05 -10.84 16 14 C 0.49 7.98 7.06 -10.98 -0.08 7.91 16 15 O -0.51 -10.85 10.82 0.15 0.00 -10.85 16 16 C -0.13 -1.38 4.57 -27.88 -0.13 -1.51 16 17 C -0.03 -0.32 0.53 -154.24 -0.08 -0.41 16 18 C 0.49 7.29 5.50 36.01 0.20 7.49 16 19 O -0.49 -9.14 15.97 -21.97 -0.35 -9.49 16 20 O -0.52 -6.04 13.26 -39.26 -0.52 -6.56 16 21 C -0.07 -0.92 4.48 -26.85 -0.12 -1.04 16 22 C -0.08 -1.04 6.14 -104.20 -0.64 -1.68 16 23 C -0.10 -1.23 10.04 -39.54 -0.40 -1.63 16 24 C -0.12 -1.18 10.05 -39.62 -0.40 -1.58 16 25 C -0.13 -1.17 10.05 -39.62 -0.40 -1.57 16 26 C -0.10 -1.01 10.04 -39.53 -0.40 -1.40 16 27 C -0.11 -1.20 6.14 -104.21 -0.64 -1.84 16 28 C -0.07 -0.62 5.86 -26.85 -0.16 -0.78 16 29 C -0.08 -2.10 8.58 -39.79 -0.34 -2.44 16 30 C -0.15 -4.17 8.63 -39.26 -0.34 -4.51 16 31 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 32 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 33 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.39 4.88 8.81 -40.82 -0.36 4.52 16 35 H 0.11 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.11 0.92 8.13 -51.93 -0.42 0.49 16 37 H 0.41 3.38 9.10 45.56 0.41 3.80 16 38 H 0.11 1.95 6.21 -51.93 -0.32 1.62 16 39 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 40 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 44 H 0.09 0.73 7.85 -51.93 -0.41 0.32 16 45 H 0.10 0.66 7.88 -51.93 -0.41 0.25 16 46 H 0.10 2.54 6.35 -52.49 -0.33 2.21 16 47 H 0.12 3.32 6.23 -52.48 -0.33 2.99 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -34.75 391.71 -10.76 -45.52 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -5.08 Total: 15.33 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -6.24 Total: -22.41 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.56 Total: -31.29 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.87 Total: -26.90 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.75 -10.76 -45.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078733082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.289 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.28 seconds