Wall clock time and date at job start Tue Mar 31 2020 06:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86802 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46798 * 300.00298 * 3 2 1 6 6 H 1.48500 * 109.47282 * 60.00084 * 3 2 1 7 7 C 1.39902 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99848 * 197.34955 * 7 2 1 9 9 C 1.41152 * 120.00095 * 17.34031 * 7 2 1 10 10 C 1.40870 * 120.16349 * 205.81693 * 9 7 2 11 11 C 1.36378 * 119.82937 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16670 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.83328 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99496 * 147.34608 * 13 12 11 15 15 O 1.21283 * 120.00451 * 354.77084 * 14 13 12 16 16 C 1.50706 * 119.99527 * 174.76943 * 14 13 12 17 17 C 1.52999 * 109.47078 * 183.91992 * 16 14 13 18 18 C 1.50700 * 110.73328 * 60.43122 * 17 16 14 19 19 O 1.20818 * 120.00329 * 237.51330 * 18 17 16 20 20 O 1.34231 * 119.99378 * 57.51165 * 18 17 16 21 21 C 1.54348 * 110.81798 * 297.02926 * 17 16 14 22 22 C 1.51374 * 105.17030 * 215.43008 * 21 17 16 23 23 C 1.38493 * 130.39069 * 197.16962 * 22 21 17 24 24 C 1.38106 * 120.21667 * 180.30052 * 23 22 21 25 25 C 1.38255 * 119.93025 * 359.40226 * 24 23 22 26 26 C 1.38104 * 119.93420 * 0.61329 * 25 24 23 27 27 C 1.38218 * 109.75660 * 17.18417 * 22 21 17 28 28 C 1.51365 * 109.75855 * 0.02562 * 27 22 21 29 29 C 1.39482 * 120.33180 * 0.25566 * 12 11 10 30 30 C 1.36368 * 120.17117 * 359.47856 * 29 12 11 31 31 H 0.97001 * 119.99942 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.08735 * 0.02562 * 10 9 7 33 33 H 1.07997 * 119.91964 * 179.97438 * 11 10 9 34 34 H 0.96998 * 120.00286 * 327.34886 * 13 12 11 35 35 H 1.08991 * 109.47294 * 63.91656 * 16 14 13 36 36 H 1.09006 * 109.46602 * 303.91696 * 16 14 13 37 37 H 0.96704 * 116.99786 * 180.02562 * 20 18 17 38 38 H 1.09006 * 110.30625 * 96.50819 * 21 17 16 39 39 H 1.08996 * 110.30499 * 334.35175 * 21 17 16 40 40 H 1.08005 * 119.89498 * 0.02562 * 23 22 21 41 41 H 1.08000 * 120.03303 * 179.69799 * 24 23 22 42 42 H 1.07999 * 120.03542 * 180.27279 * 25 24 23 43 43 H 1.08003 * 119.89437 * 179.66315 * 26 25 24 44 44 H 1.09004 * 110.29847 * 223.88841 * 28 27 22 45 45 H 1.08995 * 110.30655 * 101.73340 * 28 27 22 46 46 H 1.07999 * 119.91453 * 179.74810 * 29 12 11 47 47 H 1.08004 * 120.09140 * 180.26081 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0514 -1.2330 0.2784 9 6 1.3506 -2.4061 -0.3654 10 6 1.8118 -3.6450 0.1210 11 6 1.1716 -4.7950 -0.2363 12 6 0.0631 -4.7464 -1.0815 13 7 -0.5850 -5.9248 -1.4423 14 6 -1.9155 -5.9233 -1.6573 15 8 -2.5631 -4.9201 -1.4451 16 6 -2.5986 -7.1685 -2.1616 17 6 -4.0786 -6.8723 -2.4123 18 6 -4.2379 -5.7878 -3.4464 19 8 -4.8464 -4.7797 -3.1759 20 8 -3.7035 -5.9418 -4.6681 21 6 -4.7910 -6.4866 -1.0986 22 6 -6.1833 -7.0688 -1.2173 23 6 -7.3387 -6.7836 -0.5089 24 6 -8.5111 -7.4566 -0.7915 25 6 -8.5355 -8.4094 -1.7929 26 6 -7.3842 -8.6954 -2.5002 27 6 -6.2060 -8.0260 -2.2141 28 6 -4.8305 -8.1530 -2.8330 29 6 -0.3958 -3.5239 -1.5718 30 6 0.2307 -2.3653 -1.2190 31 1 -0.4850 0.8401 0.0004 32 1 2.6702 -3.6842 0.7752 33 1 1.5242 -5.7457 0.1355 34 1 -0.0790 -6.7467 -1.5388 35 1 -2.5073 -7.9596 -1.4175 36 1 -2.1294 -7.4888 -3.0919 37 1 -3.8316 -5.2189 -5.2976 38 1 -4.8417 -5.4022 -1.0000 39 1 -4.2711 -6.9209 -0.2447 40 1 -7.3217 -6.0357 0.2701 41 1 -9.4092 -7.2353 -0.2339 42 1 -9.4525 -8.9335 -2.0183 43 1 -7.4027 -9.4437 -3.2787 44 1 -4.9079 -8.2061 -3.9190 45 1 -4.3215 -9.0356 -2.4457 46 1 -1.2522 -3.4946 -2.2291 47 1 -0.1283 -1.4190 -1.5961 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078733082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:32 Heat of formation + Delta-G solvation = -101.170416 kcal Electronic energy + Delta-G solvation = -32174.413490 eV Core-core repulsion = 27864.369035 eV Total energy + Delta-G solvation = -4310.044455 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -42.38963 -40.91697 -40.33884 -39.07926 -37.25928 -36.89116 -36.12966 -34.73488 -32.49481 -32.34733 -31.42122 -30.83568 -28.44680 -28.21205 -26.48502 -25.37046 -23.39545 -23.03059 -22.57114 -21.96206 -21.23671 -20.66186 -19.27733 -19.00273 -18.48005 -17.84470 -17.65213 -17.19657 -16.99007 -16.71124 -16.25042 -15.94067 -15.75223 -15.64494 -15.20785 -15.03776 -14.70641 -14.48354 -14.29280 -14.04762 -13.93385 -13.88704 -13.80237 -13.72462 -13.40099 -13.14902 -12.82824 -12.79875 -12.67071 -12.63002 -12.40845 -12.33514 -12.17447 -12.03870 -11.74982 -11.72952 -11.64170 -11.41748 -11.23442 -10.77538 -10.41206 -9.72607 -9.46603 -9.45143 -8.85941 -8.62108 -6.28075 0.42045 0.46735 0.80525 1.12638 1.26069 1.35314 1.41323 1.52128 1.85252 2.01287 2.18693 2.33584 2.75389 2.82428 3.18958 3.34002 3.67740 3.72704 3.86906 3.91694 4.12630 4.16051 4.27336 4.36540 4.43508 4.45492 4.58254 4.60619 4.61898 4.69173 4.73986 4.86758 4.94282 4.96282 4.99026 5.08818 5.18419 5.20123 5.23336 5.29070 5.44695 5.53212 5.60531 5.62221 5.66748 5.69732 5.85607 6.07762 6.10104 6.11376 6.33731 6.66882 6.77322 6.91448 6.98608 7.00641 7.48182 8.32312 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002196 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.031575 B =12748.330959 C =13290.443767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.495 4.495 8 H 0.083 0.917 9 C 0.071 3.929 10 C -0.222 4.222 11 C -0.100 4.100 12 C 0.015 3.985 13 N -0.641 5.641 14 C 0.482 3.518 15 O -0.566 6.566 16 C -0.114 4.114 17 C -0.028 4.028 18 C 0.490 3.510 19 O -0.542 6.542 20 O -0.509 6.509 21 C -0.065 4.065 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.107 4.107 27 C -0.114 4.114 28 C -0.056 4.056 29 C -0.100 4.100 30 C -0.181 4.181 31 H 0.285 0.715 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.421 0.579 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.422 0.578 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.141 0.859 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.102 0.898 45 H 0.138 0.862 46 H 0.085 0.915 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 -22.634 -7.255 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.524 4.524 8 H 0.101 0.899 9 C 0.069 3.931 10 C -0.242 4.242 11 C -0.120 4.120 12 C -0.079 4.079 13 N -0.287 5.287 14 C 0.270 3.730 15 O -0.444 6.444 16 C -0.154 4.154 17 C -0.029 4.029 18 C 0.332 3.668 19 O -0.431 6.431 20 O -0.322 6.322 21 C -0.102 4.102 22 C -0.112 4.112 23 C -0.149 4.149 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.124 4.124 27 C -0.114 4.114 28 C -0.092 4.092 29 C -0.120 4.120 30 C -0.202 4.202 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.156 0.844 34 H 0.259 0.741 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.282 0.718 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.120 0.880 45 H 0.156 0.844 46 H 0.104 0.896 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.424 -21.854 -6.774 25.573 hybrid contribution 0.144 2.071 -0.094 2.078 sum -11.280 -19.783 -6.868 23.786 Atomic orbital electron populations 1.69967 1.09355 1.30337 1.36213 1.26888 0.95395 1.05009 0.91345 0.85125 0.79657 0.75975 0.78723 1.17378 1.19319 1.19178 1.19836 0.98319 0.92290 1.41963 0.89920 1.18006 0.91685 0.93779 0.89643 1.20849 1.04548 0.92485 1.06279 1.20435 0.96085 0.98437 0.97014 1.17205 0.99107 0.85868 1.05696 1.42872 1.07526 1.10450 1.67844 1.21583 0.82169 0.91243 0.77983 1.90842 1.64905 1.36961 1.51730 1.21881 0.90811 0.95694 1.06966 1.20809 0.97126 0.93332 0.91652 1.23399 0.73985 0.87134 0.82233 1.90701 1.40846 1.31532 1.80007 1.84404 1.72713 1.51427 1.23643 1.21015 0.91701 1.01316 0.96177 1.20733 0.95064 0.97804 0.97600 1.20858 0.92809 1.00660 1.00587 1.21330 0.97588 0.96689 0.98667 1.21419 0.99146 0.98053 0.95726 1.20945 0.90996 1.00030 1.00470 1.20791 0.96356 0.97095 0.97202 1.21151 0.90193 0.95446 1.02447 1.20397 0.98577 0.92826 1.00175 1.20834 1.00582 0.96383 1.02363 0.90471 0.87122 0.84357 0.74094 0.82762 0.83930 0.71753 0.92344 0.88504 0.86981 0.84111 0.83077 0.83253 0.87994 0.84416 0.89642 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.45 11.01 21.82 0.24 -47.21 16 2 C 0.03 1.47 5.13 85.24 0.44 1.90 16 3 Si 0.98 40.10 29.59 68.60 2.03 42.13 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.49 -27.48 9.03 23.39 0.21 -27.26 16 8 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 9 C 0.07 4.00 5.56 -21.28 -0.12 3.88 16 10 C -0.22 -10.67 9.74 22.48 0.22 -10.45 16 11 C -0.10 -4.11 9.89 22.14 0.22 -3.89 16 12 C 0.01 0.64 6.30 38.57 0.24 0.88 16 13 N -0.64 -19.57 5.31 -303.10 -1.61 -21.18 16 14 C 0.48 15.02 7.06 87.66 0.62 15.64 16 15 O -0.57 -24.73 10.82 2.13 0.02 -24.71 16 16 C -0.11 -1.99 4.57 29.85 0.14 -1.85 16 17 C -0.03 -0.62 0.53 -52.01 -0.03 -0.64 16 18 C 0.49 14.41 5.50 71.24 0.39 14.80 16 19 O -0.54 -21.79 15.97 25.07 0.40 -21.39 16 20 O -0.51 -11.04 13.26 -51.42 -0.68 -11.73 16 21 C -0.07 -1.83 4.48 30.52 0.14 -1.70 16 22 C -0.11 -2.86 6.14 -19.59 -0.12 -2.98 16 23 C -0.13 -3.25 10.04 22.30 0.22 -3.03 16 24 C -0.12 -2.41 10.05 22.24 0.22 -2.18 16 25 C -0.13 -2.00 10.05 22.24 0.22 -1.78 16 26 C -0.11 -1.70 10.04 22.30 0.22 -1.48 16 27 C -0.11 -2.24 6.14 -19.60 -0.12 -2.36 16 28 C -0.06 -0.80 5.86 30.52 0.18 -0.62 16 29 C -0.10 -5.18 8.58 22.13 0.19 -4.99 16 30 C -0.18 -10.45 8.63 22.48 0.19 -10.25 16 31 H 0.28 14.84 8.30 -92.71 -0.77 14.07 16 32 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.42 8.40 8.81 -92.71 -0.82 7.58 16 35 H 0.15 1.37 8.11 -2.39 -0.02 1.35 16 36 H 0.14 1.58 8.13 -2.38 -0.02 1.56 16 37 H 0.42 6.76 9.10 -74.05 -0.67 6.09 16 38 H 0.06 2.27 6.21 -2.38 -0.01 2.25 16 39 H 0.10 2.43 7.89 -2.39 -0.02 2.42 16 40 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.10 1.21 7.85 -2.38 -0.02 1.19 16 45 H 0.14 0.94 7.88 -2.39 -0.02 0.92 16 46 H 0.09 4.63 6.35 -2.91 -0.02 4.61 16 47 H 0.09 5.51 6.23 -2.91 -0.02 5.50 16 Total: -1.00 -86.06 391.71 3.64 -82.43 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.45 Total: 40.03 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 3.68 Total: -38.36 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -1.37 Total: -68.39 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -0.26 Total: -57.82 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -86.06 3.64 -82.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078733082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.745 kcal (2) G-P(sol) polarization free energy of solvation -86.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds