Wall clock time and date at job start Tue Mar 31 2020 07:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47216 * 2 1 4 4 C 1.50704 * 109.46761 * 180.02562 * 3 2 1 5 5 N 1.30713 * 125.52746 * 270.03855 * 4 3 2 6 6 N 1.40443 * 106.79387 * 179.72054 * 5 4 3 7 7 H 0.97000 * 126.82645 * 180.26225 * 6 5 4 8 8 C 1.34435 * 106.35259 * 0.39879 * 6 5 4 9 9 C 1.50693 * 125.96083 * 179.85563 * 8 6 5 10 10 H 1.09000 * 109.51021 * 4.64111 * 9 8 6 11 11 C 1.53107 * 109.50408 * 124.72229 * 9 8 6 12 12 N 1.47011 * 109.29117 * 176.76465 * 11 9 8 13 13 C 1.46901 * 110.99826 * 177.63406 * 12 11 9 14 14 H 1.08996 * 109.47362 * 56.06614 * 13 12 11 15 15 C 1.53000 * 109.47079 * 176.07271 * 13 12 11 16 16 C 1.50705 * 109.46651 * 296.06487 * 13 12 11 17 17 O 1.21278 * 120.00400 * 335.56485 * 16 13 12 18 18 N 1.34777 * 119.99752 * 155.56799 * 16 13 12 19 19 C 1.46500 * 119.99914 * 359.97438 * 18 16 13 20 20 C 1.46496 * 119.99928 * 180.02562 * 18 16 13 21 21 C 1.50697 * 109.47427 * 89.99471 * 20 18 16 22 22 H 1.07995 * 120.00057 * 0.02562 * 21 20 18 23 23 C 1.37886 * 120.00088 * 180.02562 * 21 20 18 24 24 N 1.31518 * 119.99822 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00026 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47175 * 59.99709 * 25 23 21 27 27 H 1.48500 * 109.47094 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46767 * 299.99938 * 25 23 21 29 29 C 1.47018 * 110.75291 * 301.45010 * 12 11 9 30 30 C 1.53100 * 109.29561 * 58.54996 * 29 12 11 31 31 O 1.43013 * 109.50889 * 244.50429 * 9 8 6 32 32 N 1.30835 * 108.07590 * 359.60269 * 8 6 5 33 33 H 1.08996 * 109.46607 * 300.00052 * 1 2 3 34 34 H 1.09000 * 109.47019 * 59.99739 * 1 2 3 35 35 H 1.08998 * 109.47288 * 180.02562 * 1 2 3 36 36 H 1.09005 * 109.46418 * 239.99888 * 2 1 3 37 37 H 1.09000 * 109.47019 * 120.00261 * 2 1 3 38 38 H 1.08996 * 109.47375 * 60.00418 * 3 2 1 39 39 H 1.09000 * 109.47339 * 300.00065 * 3 2 1 40 40 H 1.08994 * 109.50492 * 296.71614 * 11 9 8 41 41 H 1.08992 * 109.50505 * 56.80638 * 11 9 8 42 42 H 1.08996 * 109.47560 * 59.99465 * 15 13 12 43 43 H 1.09005 * 109.46995 * 179.97438 * 15 13 12 44 44 H 1.09002 * 109.46779 * 299.99293 * 15 13 12 45 45 H 1.08998 * 109.46702 * 90.00775 * 19 18 16 46 46 H 1.09004 * 109.46895 * 209.99953 * 19 18 16 47 47 H 1.08994 * 109.47108 * 330.00112 * 19 18 16 48 48 H 1.09006 * 109.47364 * 209.99823 * 20 18 16 49 49 H 1.09007 * 109.46971 * 329.99372 * 20 18 16 50 50 H 0.96994 * 119.99762 * 180.02562 * 24 23 21 51 51 H 1.09008 * 109.47155 * 298.61945 * 29 12 11 52 52 H 1.08997 * 109.54551 * 178.52950 * 29 12 11 53 53 H 1.08997 * 109.50753 * 183.23867 * 30 29 12 54 54 H 1.08999 * 109.50398 * 63.10528 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4423 -0.0006 5 7 4.3071 1.4414 1.0628 6 7 5.6370 1.4351 0.6112 7 1 6.4371 1.4294 1.1595 8 6 5.5806 1.4416 -0.7319 9 6 6.7621 1.4415 -1.6672 10 1 7.6828 1.3522 -1.0907 11 6 6.6482 0.2603 -2.6346 12 7 7.7612 0.3090 -3.5939 13 6 7.7201 -0.8411 -4.5068 14 1 6.7532 -0.8721 -5.0089 15 6 8.8320 -0.7051 -5.5489 16 6 7.9197 -2.1123 -3.7224 17 8 8.5026 -2.0837 -2.6592 18 7 7.4506 -3.2811 -4.2024 19 6 6.7461 -3.3156 -5.4864 20 6 7.6442 -4.5167 -3.4396 21 6 6.4770 -4.7203 -2.5083 22 1 5.6714 -4.0014 -2.4870 23 6 6.4377 -5.8244 -1.6834 24 7 7.4190 -6.6997 -1.7089 25 14 4.9906 -6.0771 -0.5295 26 1 3.7379 -6.1757 -1.3208 27 1 5.1869 -7.3296 0.2438 28 1 4.8964 -4.9272 0.4054 29 6 7.7505 1.5757 -4.3402 30 6 7.8533 2.7437 -3.3558 31 8 6.7810 2.6617 -2.4129 32 7 4.3209 1.4425 -1.0854 33 1 -0.3632 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3634 -1.0276 0.0005 36 1 1.8933 -0.5139 -0.8901 37 1 1.8934 -0.5139 0.8900 38 1 1.6768 1.9563 0.8900 39 1 1.6768 1.9563 -0.8900 40 1 6.6910 -0.6740 -2.0748 41 1 5.7018 0.3198 -3.1718 42 1 9.7989 -0.6741 -5.0468 43 1 8.8017 -1.5587 -6.2261 44 1 8.6876 0.2144 -6.1163 45 1 7.4634 -3.4831 -6.2899 46 1 6.0148 -4.1238 -5.4780 47 1 6.2361 -2.3657 -5.6466 48 1 7.7127 -5.3606 -4.1262 49 1 8.5640 -4.4451 -2.8592 50 1 7.3912 -7.4765 -1.1289 51 1 6.8219 1.6567 -4.9053 52 1 8.5974 1.6020 -5.0259 53 1 7.7879 3.6856 -3.9005 54 1 8.8060 2.6927 -2.8287 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078893235.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:22 Heat of formation + Delta-G solvation = -9.471157 kcal Electronic energy + Delta-G solvation = -34847.432932 eV Core-core repulsion = 30434.474532 eV Total energy + Delta-G solvation = -4412.958400 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 365.221 amu Computer time = 4.87 seconds Orbital eigenvalues (eV) -43.41368 -41.41110 -40.09946 -37.19670 -36.51351 -36.37788 -34.78340 -33.86860 -33.52446 -32.34039 -31.27698 -29.73604 -28.54241 -27.81939 -27.38383 -26.00563 -25.19519 -23.88109 -23.25522 -22.28998 -21.72947 -21.04216 -19.95452 -19.19738 -18.74016 -18.20145 -17.82636 -17.54828 -16.99962 -16.60886 -16.52279 -16.25794 -16.17723 -15.79673 -15.68597 -15.51119 -15.30694 -15.06195 -14.54374 -14.41488 -14.14564 -14.05036 -13.77077 -13.51140 -13.47372 -13.24106 -13.17793 -13.03942 -12.91466 -12.80165 -12.74509 -12.66681 -12.55513 -12.51108 -12.32018 -12.25315 -12.23812 -11.79343 -11.72053 -11.67269 -11.25040 -11.23276 -10.93773 -10.69354 -10.68267 -10.44662 -9.44745 -9.39948 -8.27179 -6.41252 0.26639 1.29240 1.32381 1.32689 1.39860 1.59642 1.80585 2.20439 2.33546 2.51562 2.74086 2.99695 3.02043 3.35608 3.54902 3.65209 3.71184 3.84598 3.88454 3.99509 4.05220 4.08255 4.15675 4.28354 4.35363 4.41092 4.43724 4.51659 4.61636 4.65147 4.69743 4.73562 4.74873 4.77933 4.90402 4.91062 4.92006 4.95043 5.00429 5.01782 5.10698 5.19756 5.23401 5.25072 5.34025 5.39387 5.51574 5.66506 5.80464 5.85140 5.89186 6.00952 6.02477 6.65995 6.78405 6.88303 7.24647 7.49718 8.79435 Molecular weight = 365.22amu Principal moments of inertia in cm(-1) A = 0.005903 B = 0.004242 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4742.053499 B = 6598.629390 C =10045.382049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.021 4.021 4 C 0.217 3.783 5 N -0.326 5.326 6 N -0.465 5.465 7 H 0.454 0.546 8 C 0.289 3.711 9 C 0.192 3.808 10 H 0.100 0.900 11 C 0.047 3.953 12 N -0.526 5.526 13 C 0.075 3.925 14 H 0.078 0.922 15 C -0.135 4.135 16 C 0.500 3.500 17 O -0.578 6.578 18 N -0.612 5.612 19 C 0.076 3.924 20 C 0.263 3.737 21 C -0.540 4.540 22 H 0.045 0.955 23 C 0.014 3.986 24 N -0.924 5.924 25 Si 0.957 3.043 26 H -0.260 1.260 27 H -0.273 1.273 28 H -0.285 1.285 29 C 0.012 3.988 30 C 0.062 3.938 31 O -0.380 6.380 32 N -0.538 5.538 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.025 0.975 49 H -0.002 1.002 50 H 0.268 0.732 51 H 0.053 0.947 52 H 0.124 0.876 53 H 0.138 0.862 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 21.246 -7.007 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.060 4.060 4 C -0.065 4.065 5 N -0.156 5.156 6 N -0.185 5.185 7 H 0.302 0.698 8 C 0.009 3.991 9 C 0.130 3.870 10 H 0.117 0.883 11 C -0.083 4.083 12 N -0.252 5.252 13 C -0.037 4.037 14 H 0.096 0.904 15 C -0.192 4.192 16 C 0.288 3.712 17 O -0.457 6.457 18 N -0.344 5.344 19 C -0.066 4.066 20 C 0.142 3.858 21 C -0.579 4.579 22 H 0.064 0.936 23 C -0.185 4.185 24 N -0.563 5.563 25 Si 0.782 3.218 26 H -0.184 1.184 27 H -0.198 1.198 28 H -0.211 1.211 29 C -0.115 4.115 30 C -0.014 4.014 31 O -0.298 6.298 32 N -0.268 5.268 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.043 0.957 49 H 0.016 0.984 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.142 0.858 53 H 0.156 0.844 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.869 21.205 -5.742 22.501 hybrid contribution -0.230 -1.201 0.900 1.518 sum -5.099 20.004 -4.843 21.204 Atomic orbital electron populations 1.21708 0.92741 1.02440 1.03144 1.21450 0.98031 0.94880 1.01320 1.20159 0.81329 0.98938 1.05589 1.25013 0.99594 0.96862 0.85041 1.77922 0.87054 1.27672 1.22974 1.47921 1.08428 1.56259 1.05929 0.69755 1.23878 0.94686 0.96348 0.84228 1.19984 0.91133 0.85826 0.90014 0.88265 1.22361 0.93054 0.97568 0.95317 1.61832 1.43442 1.02470 1.17434 1.21686 1.01825 0.87409 0.92749 0.90436 1.21846 0.96304 1.04705 0.96344 1.21090 0.78601 0.85606 0.85918 1.90620 1.43854 1.86636 1.24608 1.48199 1.55578 1.08121 1.22478 1.21987 0.97262 1.03589 0.83756 1.18701 0.95327 0.81311 0.90478 1.21602 1.06230 1.07448 1.22617 0.93647 1.25732 0.98938 0.95508 0.98363 1.70021 1.33292 1.12859 1.40178 0.85638 0.79971 0.77347 0.78893 1.18428 1.19780 1.21144 1.23116 1.03726 0.87672 0.96996 1.23074 0.89533 0.99280 0.89515 1.88027 1.52754 1.34877 1.54143 1.70321 1.00227 1.24472 1.31756 0.91138 0.91289 0.92471 0.93382 0.93156 0.87654 0.87717 0.92825 0.93483 0.92316 0.90418 0.87678 0.90449 0.91679 0.89518 0.95723 0.98353 0.92311 0.92921 0.85835 0.84415 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 71.98 0.71 -1.64 16 2 C -0.12 -2.68 5.92 30.60 0.18 -2.50 16 3 C -0.02 -0.45 5.84 29.85 0.17 -0.28 16 4 C 0.22 6.55 7.39 138.63 1.03 7.57 16 5 N -0.33 -10.07 12.80 -51.33 -0.66 -10.73 16 6 N -0.47 -13.05 7.45 -50.71 -0.38 -13.43 16 7 H 0.45 9.64 8.96 -213.10 -1.91 7.73 16 8 C 0.29 8.82 7.14 138.22 0.99 9.81 16 9 C 0.19 5.28 3.36 29.88 0.10 5.38 16 10 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 11 C 0.05 1.50 4.60 86.32 0.40 1.89 16 12 N -0.53 -14.38 4.27 -874.35 -3.74 -18.11 16 13 C 0.07 2.09 1.79 44.17 0.08 2.17 16 14 H 0.08 1.94 6.08 -2.39 -0.01 1.93 16 15 C -0.13 -2.68 8.66 71.98 0.62 -2.06 16 16 C 0.50 20.78 5.95 87.66 0.52 21.30 16 17 O -0.58 -29.97 15.22 -3.02 -0.05 -30.02 16 18 N -0.61 -26.09 2.86 -851.13 -2.43 -28.52 16 19 C 0.08 2.28 9.86 127.77 1.26 3.54 16 20 C 0.26 14.35 5.16 85.63 0.44 14.79 16 21 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 22 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 23 C 0.01 0.83 5.46 84.66 0.46 1.29 16 24 N -0.92 -56.37 13.29 21.45 0.28 -56.09 16 25 Si 0.96 46.22 29.54 68.60 2.03 48.25 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 29 C 0.01 0.20 5.14 86.31 0.44 0.65 16 30 C 0.06 1.01 7.01 72.02 0.50 1.51 16 31 O -0.38 -9.21 10.45 -148.98 -1.56 -10.77 16 32 N -0.54 -17.68 11.15 -179.72 -2.00 -19.68 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 2.23 6.54 -2.39 -0.02 2.21 16 41 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.43 7.57 -2.38 -0.02 1.41 16 44 H 0.10 1.28 6.27 -2.39 -0.01 1.26 16 45 H 0.08 1.83 7.96 -2.39 -0.02 1.82 16 46 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16 47 H 0.09 2.05 5.86 -2.39 -0.01 2.04 16 48 H 0.02 1.36 8.07 -2.38 -0.02 1.34 16 49 H 0.00 -0.10 7.42 -2.38 -0.02 -0.12 16 50 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 51 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 52 H 0.12 1.48 6.07 -2.39 -0.01 1.46 16 53 H 0.14 1.35 8.14 -2.39 -0.02 1.34 16 54 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -83.97 431.76 -1.35 -85.32 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -1.00 Total: 21.90 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 8.15 Total: 31.89 kcal Atomic # 7 Polarization: -137.64 SS G_CDS: -8.92 Total: -146.57 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -1.60 Total: -40.79 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -83.97 -1.35 -85.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078893235.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.849 kcal (2) G-P(sol) polarization free energy of solvation -83.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.88 seconds