Wall clock time and date at job start Tue Mar 31 2020 07:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 C 1.34777 * 120.59893 * 124.62428 * 12 11 10 14 14 O 1.21275 * 120.00207 * 180.02562 * 13 12 11 15 15 C 1.50707 * 119.99596 * 0.02562 * 13 12 11 16 16 C 1.52993 * 109.46827 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46827 * 179.97438 * 16 15 13 18 18 C 1.38248 * 119.98624 * 269.71975 * 17 16 15 19 19 C 1.38220 * 120.00171 * 179.76799 * 18 17 16 20 20 C 1.38320 * 119.99368 * 0.51099 * 19 18 17 21 21 Br 1.89101 * 120.01193 * 179.72201 * 20 19 18 22 22 C 1.38326 * 119.98065 * 359.74580 * 20 19 18 23 23 C 1.38215 * 119.98932 * 0.02562 * 22 20 19 24 24 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 25 25 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 26 26 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 28 28 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 29 29 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 30 30 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 31 31 H 1.09008 * 109.46880 * 300.00291 * 15 13 12 32 32 H 1.08996 * 109.47269 * 59.99699 * 15 13 12 33 33 H 1.09000 * 109.47600 * 300.00066 * 16 15 13 34 34 H 1.09000 * 109.47473 * 60.00503 * 16 15 13 35 35 H 1.07995 * 119.99988 * 0.02831 * 18 17 16 36 36 H 1.08003 * 120.00254 * 180.23952 * 19 18 17 37 37 H 1.07999 * 120.00690 * 179.97438 * 22 20 19 38 38 H 1.07994 * 119.99747 * 179.97438 * 23 22 20 39 39 H 1.09001 * 109.60759 * 295.47709 * 24 12 11 40 40 H 1.08997 * 109.60686 * 174.97196 * 24 12 11 41 41 H 1.08993 * 109.60915 * 354.94812 * 25 9 7 42 42 H 1.09004 * 109.60752 * 115.28520 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3440 -5.7194 2.2442 14 8 -0.5933 -5.6865 3.0129 15 6 0.8053 -7.0360 1.6741 16 6 -0.0717 -8.1639 2.2215 17 6 0.3891 -9.4805 1.6509 18 6 -0.1552 -9.9502 0.4702 19 6 0.2706 -11.1553 -0.0559 20 6 1.2338 -11.8964 0.6046 21 35 1.8111 -13.5490 -0.1106 22 6 1.7743 -11.4285 1.7888 23 6 1.3514 -10.2210 2.3118 24 6 0.5346 -3.2873 2.4477 25 6 0.2345 -2.3367 1.2822 26 1 -0.4851 0.8400 -0.0004 27 1 1.0135 -4.0708 -0.8204 28 1 2.7054 -3.5085 -0.8010 29 1 3.0128 -4.2756 1.4848 30 1 2.2521 -5.6157 0.5910 31 1 0.7257 -7.0092 0.5872 32 1 1.8428 -7.2115 1.9581 33 1 0.0074 -8.1908 3.3083 34 1 -1.1091 -7.9883 1.9370 35 1 -0.9102 -9.3735 -0.0434 36 1 -0.1519 -11.5205 -0.9804 37 1 2.5261 -12.0069 2.3051 38 1 1.7730 -9.8558 3.2365 39 1 1.3249 -2.8662 3.0691 40 1 -0.3662 -3.4304 3.0444 41 1 0.0947 -1.3247 1.6622 42 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079013247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:50 Heat of formation + Delta-G solvation = 11.858249 kcal Electronic energy + Delta-G solvation = -24069.181255 eV Core-core repulsion = 20481.751644 eV Total energy + Delta-G solvation = -3587.429611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -40.01480 -39.37179 -36.88677 -34.47531 -33.92528 -31.74360 -31.38420 -31.20859 -30.41657 -28.87391 -26.94952 -24.74544 -23.54174 -23.15342 -22.66296 -21.26258 -20.33212 -18.54057 -17.41952 -16.73959 -16.17386 -16.04358 -15.44444 -15.29846 -15.13746 -14.80496 -13.91230 -13.79889 -13.74104 -13.66731 -13.50098 -13.27555 -13.19283 -12.92751 -12.28617 -12.26306 -11.72818 -11.68569 -11.37643 -11.25511 -11.05595 -10.98477 -10.85109 -10.75809 -10.61083 -10.57814 -10.27866 -10.00395 -9.87342 -9.41343 -9.35340 -8.84098 -8.62741 -8.26891 -6.75045 -5.88165 -3.33786 0.75032 0.98382 1.30765 2.95155 3.22893 3.31650 3.39711 3.41471 3.47697 4.39888 4.42602 4.46015 4.57875 4.90249 4.91266 4.99458 5.07078 5.14946 5.22197 5.29408 5.35431 5.51635 5.57603 5.70240 5.73485 5.76463 5.85310 5.87376 5.91670 6.01572 6.11683 6.29656 6.31265 6.35310 6.46679 6.49976 6.65702 6.83492 7.22467 7.51423 7.69603 7.88661 8.32839 8.53201 9.08610 9.71334 10.27937 11.19217 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.001700 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.624136 B =16468.690789 C =17116.610161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.088 3.912 12 N -0.597 5.597 13 C 0.507 3.493 14 O -0.558 6.558 15 C -0.132 4.132 16 C -0.068 4.068 17 C -0.060 4.060 18 C -0.110 4.110 19 C -0.088 4.088 20 C -0.097 4.097 21 Br -0.058 7.058 22 C -0.089 4.089 23 C -0.111 4.111 24 C 0.087 3.913 25 C 0.158 3.842 26 H 0.255 0.745 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -26.812 1.686 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.037 4.037 12 N -0.329 5.329 13 C 0.295 3.705 14 O -0.437 6.437 15 C -0.172 4.172 16 C -0.106 4.106 17 C -0.061 4.061 18 C -0.129 4.129 19 C -0.108 4.108 20 C -0.176 4.176 21 Br 0.027 6.973 22 C -0.109 4.109 23 C -0.130 4.130 24 C -0.037 4.037 25 C 0.032 3.968 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.318 -27.234 1.799 27.494 hybrid contribution 0.383 1.256 -0.028 1.314 sum 3.701 -25.977 1.771 26.299 Atomic orbital electron populations 1.70027 1.05342 1.25690 1.53362 1.25098 0.95301 0.98631 1.00536 0.86206 0.79348 0.83730 0.77354 1.20187 1.21659 1.21445 1.19222 0.92732 0.84631 1.42090 0.91419 1.44026 1.36561 1.01615 1.49227 1.21363 0.98420 0.87447 0.92467 1.22474 0.88422 1.00340 0.92438 1.48095 1.32539 1.07015 1.45234 1.20525 0.82850 0.85525 0.81560 1.90650 1.29071 1.87045 1.36954 1.21635 1.01120 0.92159 1.02306 1.20405 1.00102 0.88877 1.01186 1.20152 0.95187 0.96219 0.94504 1.21158 1.00320 0.95650 0.95736 1.21120 0.95614 0.94445 0.99624 1.21774 1.02472 0.94477 0.98917 1.96716 1.89616 1.25725 1.85239 1.21102 0.99295 0.96334 0.94162 1.21121 0.97282 0.94168 1.00412 1.22500 0.99802 0.82918 0.98460 1.21187 0.88999 0.98630 0.88007 0.93467 0.95874 0.91474 0.91573 0.90882 0.88823 0.89057 0.89877 0.89774 0.84858 0.85025 0.85086 0.84984 0.92234 0.90142 0.88278 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 11.20 55.49 0.62 -24.87 16 2 C 0.00 0.09 4.91 -17.44 -0.09 0.00 16 3 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.74 9.57 -15.06 -0.14 -6.89 16 8 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 9 N -0.59 -14.15 2.96 -171.77 -0.51 -14.66 16 10 C 0.13 2.50 6.70 -3.37 -0.02 2.48 16 11 C 0.09 1.36 6.52 -3.37 -0.02 1.34 16 12 N -0.60 -10.37 2.95 -172.21 -0.51 -10.88 16 13 C 0.51 8.23 7.70 -10.98 -0.08 8.14 16 14 O -0.56 -10.80 15.39 5.56 0.09 -10.71 16 15 C -0.13 -1.50 4.02 -27.88 -0.11 -1.61 16 16 C -0.07 -0.71 4.63 -27.88 -0.13 -0.84 16 17 C -0.06 -0.55 5.13 -104.61 -0.54 -1.09 16 18 C -0.11 -0.96 9.70 -39.58 -0.38 -1.35 16 19 C -0.09 -0.76 9.79 -39.56 -0.39 -1.14 16 20 C -0.10 -0.86 6.22 -39.52 -0.25 -1.11 16 21 Br -0.06 -0.48 33.70 -68.01 -2.29 -2.77 16 22 C -0.09 -0.74 9.79 -39.56 -0.39 -1.13 16 23 C -0.11 -0.93 9.70 -39.59 -0.38 -1.32 16 24 C 0.09 1.71 6.59 -3.60 -0.02 1.69 16 25 C 0.16 3.71 5.51 -3.60 -0.02 3.69 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.22 7.93 -51.93 -0.41 0.80 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.87 5.91 -51.93 -0.31 0.56 16 31 H 0.09 0.99 7.72 -51.92 -0.40 0.58 16 32 H 0.09 0.89 7.91 -51.93 -0.41 0.48 16 33 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 41 H 0.10 2.58 6.00 -51.93 -0.31 2.27 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -30.61 363.15 -11.10 -41.71 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.97 Total: -0.13 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.97 Total: 0.87 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.39 Total: -50.42 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.61 -11.10 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079013247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.572 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds