Wall clock time and date at job start Tue Mar 31 2020 07:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 C 1.34777 * 120.59893 * 124.62428 * 12 11 10 14 14 O 1.21275 * 120.00207 * 180.02562 * 13 12 11 15 15 C 1.50707 * 119.99596 * 0.02562 * 13 12 11 16 16 C 1.52993 * 109.46827 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46827 * 179.97438 * 16 15 13 18 18 C 1.38248 * 119.98624 * 269.71975 * 17 16 15 19 19 C 1.38220 * 120.00171 * 179.76799 * 18 17 16 20 20 C 1.38320 * 119.99368 * 0.51099 * 19 18 17 21 21 Br 1.89101 * 120.01193 * 179.72201 * 20 19 18 22 22 C 1.38326 * 119.98065 * 359.74580 * 20 19 18 23 23 C 1.38215 * 119.98932 * 0.02562 * 22 20 19 24 24 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 25 25 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 26 26 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 28 28 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 29 29 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 30 30 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 31 31 H 1.09008 * 109.46880 * 300.00291 * 15 13 12 32 32 H 1.08996 * 109.47269 * 59.99699 * 15 13 12 33 33 H 1.09000 * 109.47600 * 300.00066 * 16 15 13 34 34 H 1.09000 * 109.47473 * 60.00503 * 16 15 13 35 35 H 1.07995 * 119.99988 * 0.02831 * 18 17 16 36 36 H 1.08003 * 120.00254 * 180.23952 * 19 18 17 37 37 H 1.07999 * 120.00690 * 179.97438 * 22 20 19 38 38 H 1.07994 * 119.99747 * 179.97438 * 23 22 20 39 39 H 1.09001 * 109.60759 * 295.47709 * 24 12 11 40 40 H 1.08997 * 109.60686 * 174.97196 * 24 12 11 41 41 H 1.08993 * 109.60915 * 354.94812 * 25 9 7 42 42 H 1.09004 * 109.60752 * 115.28520 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3440 -5.7194 2.2442 14 8 -0.5933 -5.6865 3.0129 15 6 0.8053 -7.0360 1.6741 16 6 -0.0717 -8.1639 2.2215 17 6 0.3891 -9.4805 1.6509 18 6 -0.1552 -9.9502 0.4702 19 6 0.2706 -11.1553 -0.0559 20 6 1.2338 -11.8964 0.6046 21 35 1.8111 -13.5490 -0.1106 22 6 1.7743 -11.4285 1.7888 23 6 1.3514 -10.2210 2.3118 24 6 0.5346 -3.2873 2.4477 25 6 0.2345 -2.3367 1.2822 26 1 -0.4851 0.8400 -0.0004 27 1 1.0135 -4.0708 -0.8204 28 1 2.7054 -3.5085 -0.8010 29 1 3.0128 -4.2756 1.4848 30 1 2.2521 -5.6157 0.5910 31 1 0.7257 -7.0092 0.5872 32 1 1.8428 -7.2115 1.9581 33 1 0.0074 -8.1908 3.3083 34 1 -1.1091 -7.9883 1.9370 35 1 -0.9102 -9.3735 -0.0434 36 1 -0.1519 -11.5205 -0.9804 37 1 2.5261 -12.0069 2.3051 38 1 1.7730 -9.8558 3.2365 39 1 1.3249 -2.8662 3.0691 40 1 -0.3662 -3.4304 3.0444 41 1 0.0947 -1.3247 1.6622 42 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079013247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:49 Heat of formation + Delta-G solvation = -3.730039 kcal Electronic energy + Delta-G solvation = -24069.857213 eV Core-core repulsion = 20481.751644 eV Total energy + Delta-G solvation = -3588.105569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.15270 -40.24464 -38.45926 -35.62665 -35.29709 -33.07455 -32.61741 -31.99575 -31.78528 -29.78495 -28.56867 -25.97095 -25.09791 -24.14190 -23.76866 -22.28107 -21.62908 -20.00065 -18.79685 -17.94605 -17.31508 -16.94819 -16.80084 -16.69985 -16.17395 -15.96430 -15.48192 -15.30780 -15.02254 -14.79447 -14.62140 -14.35223 -14.27388 -13.82670 -13.59336 -13.42285 -13.24884 -12.97401 -12.65134 -12.47867 -12.36278 -12.24860 -12.10120 -11.97383 -11.86893 -11.82681 -11.65636 -11.62226 -11.23603 -10.76251 -10.61925 -9.96866 -9.79634 -9.51544 -8.66046 -7.88885 -5.37725 0.09353 0.36831 0.67645 1.46804 1.49662 1.59533 1.68366 2.08858 2.50769 2.65118 3.26146 3.49172 3.60846 3.80611 3.98924 4.00366 4.12648 4.15665 4.25927 4.33966 4.42864 4.43942 4.46445 4.53885 4.62214 4.69249 4.76490 4.81848 4.89662 4.93075 5.06866 5.08093 5.20125 5.25955 5.26143 5.27531 5.47058 5.61199 5.63143 5.69085 5.87334 6.35188 6.56745 7.09158 7.22504 7.79141 8.32090 9.16326 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.001700 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.624136 B =16468.690789 C =17116.610161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.260 4.260 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.123 3.877 11 C 0.099 3.901 12 N -0.604 5.604 13 C 0.504 3.496 14 O -0.593 6.593 15 C -0.122 4.122 16 C -0.060 4.060 17 C -0.066 4.066 18 C -0.115 4.115 19 C -0.095 4.095 20 C -0.107 4.107 21 Br -0.057 7.057 22 C -0.093 4.093 23 C -0.111 4.111 24 C 0.102 3.898 25 C 0.170 3.830 26 H 0.250 0.750 27 H 0.017 0.983 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.067 0.933 42 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.818 -28.731 1.612 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.390 4.390 8 H 0.094 0.906 9 N -0.334 5.334 10 C -0.002 4.002 11 C -0.024 4.024 12 N -0.336 5.336 13 C 0.295 3.705 14 O -0.475 6.475 15 C -0.161 4.161 16 C -0.098 4.098 17 C -0.066 4.066 18 C -0.134 4.134 19 C -0.114 4.114 20 C -0.186 4.186 21 Br 0.029 6.971 22 C -0.113 4.113 23 C -0.130 4.130 24 C -0.023 4.023 25 C 0.043 3.957 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 5.489 -29.201 1.713 29.761 hybrid contribution -0.304 1.758 -0.037 1.785 sum 5.185 -27.442 1.676 27.978 Atomic orbital electron populations 1.70184 1.06879 1.25919 1.55365 1.25867 0.95975 1.01795 1.01191 0.85197 0.78831 0.79751 0.76575 1.18625 1.22196 1.21936 1.19593 0.93168 0.85621 1.40572 0.90644 1.44288 1.36324 1.02914 1.49829 1.21598 0.98495 0.86016 0.94138 1.22474 0.87679 1.01807 0.90482 1.48193 1.33326 1.06357 1.45752 1.21412 0.81829 0.86569 0.80698 1.90638 1.30615 1.87649 1.38579 1.21669 1.02556 0.89046 1.02843 1.20273 0.99285 0.89342 1.00907 1.20036 0.95884 0.95816 0.94864 1.21297 1.00456 0.95850 0.95765 1.21280 0.95637 0.94414 1.00100 1.21955 1.02677 0.94676 0.99294 1.96719 1.89570 1.25605 1.85245 1.21307 0.99496 0.96451 0.94025 1.21304 0.96862 0.93999 1.00792 1.22055 0.99775 0.83790 0.96651 1.20870 0.88136 0.97770 0.88936 0.94091 0.96535 0.90228 0.90724 0.86224 0.87230 0.86248 0.90362 0.91103 0.84103 0.84029 0.83704 0.83438 0.91803 0.90830 0.91469 0.99057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.88 11.20 21.65 0.24 -54.64 16 2 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 3 Si 0.97 43.62 29.59 68.60 2.03 45.65 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.26 -13.56 9.57 84.03 0.80 -12.76 16 8 H 0.08 3.76 7.89 -2.91 -0.02 3.74 16 9 N -0.61 -29.20 2.96 -697.36 -2.06 -31.27 16 10 C 0.12 4.52 6.70 86.56 0.58 5.10 16 11 C 0.10 2.74 6.52 86.56 0.56 3.30 16 12 N -0.60 -19.99 2.95 -817.16 -2.41 -22.40 16 13 C 0.50 15.43 7.70 87.66 0.67 16.10 16 14 O -0.59 -22.66 15.39 -3.02 -0.05 -22.70 16 15 C -0.12 -2.35 4.02 29.85 0.12 -2.23 16 16 C -0.06 -1.13 4.63 29.85 0.14 -0.99 16 17 C -0.07 -1.04 5.13 -19.86 -0.10 -1.14 16 18 C -0.11 -1.76 9.70 22.27 0.22 -1.55 16 19 C -0.09 -1.43 9.79 22.28 0.22 -1.21 16 20 C -0.11 -1.66 6.22 22.31 0.14 -1.52 16 21 Br -0.06 -0.84 33.70 -20.37 -0.69 -1.53 16 22 C -0.09 -1.31 9.79 22.29 0.22 -1.09 16 23 C -0.11 -1.54 9.70 22.26 0.22 -1.33 16 24 C 0.10 4.05 6.59 86.41 0.57 4.62 16 25 C 0.17 8.22 5.51 86.41 0.48 8.70 16 26 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 2.69 7.93 -2.39 -0.02 2.67 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.12 2.23 5.91 -2.39 -0.01 2.21 16 31 H 0.11 1.85 7.72 -2.38 -0.02 1.83 16 32 H 0.12 1.72 7.91 -2.39 -0.02 1.70 16 33 H 0.08 1.54 8.04 -2.39 -0.02 1.53 16 34 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 35 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 3.00 6.99 -2.39 -0.02 2.99 16 41 H 0.07 3.67 6.00 -2.39 -0.01 3.66 16 42 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 Total: -1.00 -67.82 363.15 3.33 -64.49 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.02 Total: 10.85 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.25 Total: 11.54 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -4.23 Total: -108.30 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -0.69 Total: -1.53 kcal Total: -67.82 3.33 -64.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079013247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.756 kcal (2) G-P(sol) polarization free energy of solvation -67.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds