Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00020 * 2 1 4 4 H 1.48497 * 109.47268 * 270.00226 * 3 2 1 5 5 H 1.48499 * 109.47020 * 30.00946 * 3 2 1 6 6 H 1.48500 * 109.46657 * 150.00352 * 3 2 1 7 7 C 1.37877 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00017 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00267 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47498 * 179.97438 * 9 7 2 11 11 C 1.46506 * 119.99613 * 270.00384 * 10 9 7 12 12 C 1.52999 * 109.46964 * 274.87190 * 11 10 9 13 13 C 1.52998 * 117.50121 * 243.62663 * 12 11 10 14 14 C 1.52998 * 60.00057 * 252.51267 * 13 12 11 15 15 C 1.34770 * 120.00188 * 89.99496 * 10 9 7 16 16 O 1.21371 * 120.00018 * 174.96673 * 15 10 9 17 17 C 1.49285 * 119.99864 * 355.25005 * 15 10 9 18 18 O 1.21370 * 120.00283 * 275.10693 * 17 15 10 19 19 C 1.47339 * 120.00203 * 95.11353 * 17 15 10 20 20 C 1.39954 * 120.16142 * 354.59121 * 19 17 15 21 21 C 1.37791 * 119.83543 * 179.74109 * 20 19 17 22 22 C 1.38584 * 120.15812 * 0.51550 * 21 20 19 23 23 Br 1.89102 * 119.83265 * 179.74026 * 22 21 20 24 24 C 1.38582 * 120.33341 * 359.75633 * 22 21 20 25 25 C 1.37791 * 120.16133 * 359.97438 * 24 22 21 26 26 H 0.96995 * 119.99839 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46890 * 59.99436 * 9 7 2 28 28 H 1.08998 * 109.47088 * 300.00010 * 9 7 2 29 29 H 1.08992 * 109.47271 * 34.87712 * 11 10 9 30 30 H 1.09001 * 109.46676 * 154.87480 * 11 10 9 31 31 H 1.09003 * 115.54459 * 29.33314 * 12 11 10 32 32 H 1.09005 * 117.50011 * 0.02562 * 13 12 11 33 33 H 1.08994 * 117.50257 * 145.02054 * 13 12 11 34 34 H 1.09007 * 117.49389 * 252.51641 * 14 13 12 35 35 H 1.08990 * 117.50075 * 107.48762 * 14 13 12 36 36 H 1.08005 * 120.08219 * 359.97438 * 20 19 17 37 37 H 1.07999 * 119.92198 * 180.25121 * 21 20 19 38 38 H 1.07995 * 119.91776 * 179.97438 * 24 22 21 39 39 H 1.07994 * 120.08013 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.2445 -3.2656 1.2679 12 6 5.6494 -2.9267 1.7703 13 6 6.6560 -4.0736 1.8805 14 6 6.0551 -3.4589 3.1461 15 6 4.2240 -3.2109 -1.1681 16 8 4.7144 -4.3212 -1.1700 17 6 3.8749 -2.5469 -2.4587 18 8 2.7439 -2.6205 -2.8926 19 6 4.9035 -1.8021 -3.2059 20 6 6.1774 -1.6189 -2.6561 21 6 7.1359 -0.9259 -3.3631 22 6 6.8377 -0.4019 -4.6109 23 35 8.1578 0.5539 -5.5698 24 6 5.5767 -0.5745 -5.1592 25 6 4.6097 -1.2699 -4.4664 26 1 -0.4849 0.8400 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8746 -0.6801 -0.8911 29 1 3.5079 -2.9442 2.0042 30 1 4.1622 -4.3420 1.1176 31 1 6.0304 -1.9486 1.4765 32 1 6.3176 -5.0695 1.5946 33 1 7.6996 -3.8502 1.6591 34 1 6.7034 -2.8311 3.7574 35 1 5.3212 -4.0505 3.6933 36 1 6.4098 -2.0228 -1.6818 37 1 8.1207 -0.7871 -2.9419 38 1 5.3515 -0.1629 -6.1319 39 1 3.6274 -1.4032 -4.8949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079310154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -6.483694 kcal Electronic energy + Delta-G solvation = -24634.107412 eV Core-core repulsion = 20975.475252 eV Total energy + Delta-G solvation = -3658.632160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 365.041 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49417 -39.01752 -37.91915 -36.95634 -35.04616 -32.68588 -32.53003 -31.36350 -29.88510 -28.62758 -27.29219 -24.77383 -23.04833 -22.77685 -22.24390 -21.78257 -20.36251 -18.77832 -17.50651 -17.04877 -16.74493 -16.30428 -15.70632 -15.28833 -14.91603 -14.76206 -14.33750 -14.22855 -13.90312 -13.79733 -13.62115 -13.20516 -13.03831 -12.65065 -12.37872 -11.98870 -11.87046 -11.59487 -11.51689 -11.39586 -11.14962 -11.02031 -10.89532 -10.76128 -10.54560 -10.45631 -10.23641 -9.78074 -9.66749 -9.26694 -8.99591 -8.91976 -8.75222 -8.06419 -6.24002 -4.26750 0.35587 1.12473 1.32308 2.23415 2.79009 3.13721 3.18807 3.20177 3.25898 3.57375 3.93108 4.22505 4.31344 4.52314 4.66386 4.90626 4.98199 5.04643 5.07652 5.08296 5.15130 5.21121 5.39551 5.56635 5.72700 5.73334 5.87709 5.92540 5.94695 5.99369 6.05648 6.15704 6.21229 6.23203 6.43724 6.45348 6.50463 7.01298 7.33836 7.47724 7.77462 8.26086 8.41936 8.83042 9.33202 10.88732 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.008829 B = 0.003747 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.524250 B = 7471.825166 C = 8929.024944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.081 3.919 3 Si 0.864 3.136 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.203 3.797 10 N -0.568 5.568 11 C 0.146 3.854 12 C -0.165 4.165 13 C -0.175 4.175 14 C -0.177 4.177 15 C 0.498 3.502 16 O -0.539 6.539 17 C 0.396 3.604 18 O -0.388 6.388 19 C -0.135 4.135 20 C -0.060 4.060 21 C -0.102 4.102 22 C -0.066 4.066 23 Br -0.049 7.049 24 C -0.103 4.103 25 C -0.052 4.052 26 H 0.267 0.733 27 H 0.045 0.955 28 H 0.025 0.975 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.965 0.656 -6.350 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.123 4.123 3 Si 0.690 3.310 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.100 0.900 9 C 0.083 3.917 10 N -0.298 5.298 11 C 0.023 3.977 12 C -0.184 4.184 13 C -0.212 4.212 14 C -0.214 4.214 15 C 0.282 3.718 16 O -0.418 6.418 17 C 0.265 3.735 18 O -0.256 6.256 19 C -0.137 4.137 20 C -0.080 4.080 21 C -0.121 4.121 22 C -0.145 4.145 23 Br 0.036 6.964 24 C -0.122 4.122 25 C -0.071 4.071 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.890 0.541 -6.938 19.196 hybrid contribution 0.001 0.947 0.288 0.990 sum 17.891 1.488 -6.650 19.145 Atomic orbital electron populations 1.69879 1.06171 1.27200 1.48898 1.24828 0.94714 0.98698 0.94076 0.87034 0.80566 0.84297 0.79090 1.19724 1.20575 1.18768 1.21289 0.88472 0.95374 1.52943 0.90019 1.19957 0.96673 0.77276 0.97828 1.47960 1.61833 1.15815 1.04241 1.21025 0.93850 0.97735 0.85054 1.22747 0.96755 0.98791 1.00122 1.22993 0.98276 0.98259 1.01638 1.22915 1.03752 1.04113 0.90663 1.20491 0.79001 0.86496 0.85790 1.90726 1.44513 1.19463 1.87078 1.22210 0.87728 0.77293 0.86281 1.90661 1.20782 1.47675 1.66472 1.20594 0.95280 1.01449 0.96406 1.21469 0.91448 0.95368 0.99667 1.21035 1.00316 0.97817 0.92977 1.22101 0.94378 1.01460 0.96582 1.96727 1.52078 1.73422 1.74142 1.21083 0.91263 0.99201 1.00701 1.21455 0.99762 0.93235 0.92605 0.92273 0.93720 0.95766 0.89169 0.90002 0.87742 0.88576 0.89331 0.89006 0.88706 0.84249 0.84251 0.84167 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.99 13.96 55.43 0.77 -25.21 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.86 19.83 27.47 -169.99 -4.67 15.16 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 7 C -0.54 -14.42 9.94 -34.44 -0.34 -14.76 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 9 C 0.20 4.42 4.02 -5.19 -0.02 4.40 16 10 N -0.57 -11.19 2.46 -175.63 -0.43 -11.63 16 11 C 0.15 2.47 5.71 -4.04 -0.02 2.44 16 12 C -0.16 -2.30 6.01 -90.62 -0.54 -2.84 16 13 C -0.17 -2.14 10.18 -26.73 -0.27 -2.42 16 14 C -0.18 -2.03 10.25 -26.73 -0.27 -2.30 16 15 C 0.50 10.08 6.08 -11.67 -0.07 10.00 16 16 O -0.54 -11.38 16.65 5.48 0.09 -11.29 16 17 C 0.40 7.87 5.19 -31.29 -0.16 7.71 16 18 O -0.39 -8.79 17.11 5.48 0.09 -8.69 16 19 C -0.14 -2.19 5.66 -104.91 -0.59 -2.78 16 20 C -0.06 -0.84 9.47 -39.10 -0.37 -1.21 16 21 C -0.10 -1.19 9.77 -39.62 -0.39 -1.58 16 22 C -0.07 -0.77 6.24 -39.33 -0.25 -1.01 16 23 Br -0.05 -0.49 33.69 -68.01 -2.29 -2.78 16 24 C -0.10 -1.22 9.77 -39.62 -0.39 -1.61 16 25 C -0.05 -0.73 9.60 -39.10 -0.38 -1.11 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.04 0.93 7.13 -51.93 -0.37 0.56 16 28 H 0.02 0.52 6.24 -51.93 -0.32 0.20 16 29 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 30 H 0.08 1.40 7.08 -51.93 -0.37 1.03 16 31 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.10 1.23 8.03 -51.93 -0.42 0.82 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.14 1.86 7.15 -52.48 -0.38 1.49 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.15 2.01 7.66 -52.49 -0.40 1.60 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -30.70 361.89 -9.95 -40.65 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.80 Total: 3.29 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -4.17 Total: -4.95 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.34 Total: -36.84 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.18 Total: -19.98 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.29 Total: -2.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.70 -9.95 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079310154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.168 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds