Wall clock time and date at job start Tue Mar 31 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47254 * 2 1 4 4 C 1.52992 * 109.47072 * 65.00299 * 3 2 1 5 5 C 1.52999 * 109.47459 * 183.53086 * 4 3 2 6 6 C 1.53008 * 109.46950 * 185.00048 * 3 2 1 7 7 N 1.46500 * 109.47091 * 65.51858 * 6 3 2 8 8 C 1.46492 * 120.00094 * 68.65074 * 7 6 3 9 9 C 1.50700 * 109.46928 * 66.72499 * 8 7 6 10 10 H 1.08004 * 120.00228 * 0.02562 * 9 8 7 11 11 C 1.37886 * 119.99919 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99802 * 180.02562 * 11 9 8 13 13 Si 1.86791 * 120.00010 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47398 * 89.99486 * 13 11 9 15 15 H 1.48500 * 109.47007 * 209.99939 * 13 11 9 16 16 H 1.48504 * 109.47159 * 329.99717 * 13 11 9 17 17 S 1.65603 * 119.99852 * 248.93137 * 7 6 3 18 18 O 1.42101 * 106.40076 * 23.25935 * 17 7 6 19 19 O 1.42094 * 106.40571 * 156.18479 * 17 7 6 20 20 C 1.76206 * 107.21482 * 269.72546 * 17 7 6 21 21 C 1.34227 * 126.56607 * 114.68860 * 20 17 7 22 22 N 1.36916 * 109.91083 * 179.89293 * 21 20 17 23 23 H 0.97006 * 124.99060 * 180.14079 * 22 21 20 24 24 C 1.37429 * 110.02563 * 0.37750 * 22 21 20 25 25 N 1.32652 * 133.19447 * 179.74689 * 24 22 21 26 26 C 1.31595 * 121.66754 * 180.02562 * 25 24 22 27 27 C 1.38657 * 121.58438 * 0.02562 * 26 25 24 28 28 C 1.38198 * 119.41430 * 359.96991 * 27 26 25 29 29 C 1.39696 * 118.03551 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47150 * 299.99927 * 1 2 3 31 31 H 1.09010 * 109.47267 * 59.99512 * 1 2 3 32 32 H 1.08999 * 109.47283 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47150 * 240.00073 * 2 1 3 34 34 H 1.09000 * 109.47446 * 120.00502 * 2 1 3 35 35 H 1.08996 * 109.47326 * 305.00168 * 3 2 1 36 36 H 1.09003 * 109.47012 * 303.53110 * 4 3 2 37 37 H 1.09006 * 109.47468 * 63.52679 * 4 3 2 38 38 H 1.09000 * 109.46755 * 293.98640 * 5 4 3 39 39 H 1.08996 * 109.47201 * 53.98496 * 5 4 3 40 40 H 1.08994 * 109.47509 * 173.98604 * 5 4 3 41 41 H 1.09000 * 109.47018 * 305.51836 * 6 3 2 42 42 H 1.08991 * 109.46795 * 185.51790 * 6 3 2 43 43 H 1.09010 * 109.47246 * 186.72345 * 8 7 6 44 44 H 1.08998 * 109.47645 * 306.72604 * 8 7 6 45 45 H 0.97003 * 120.00259 * 180.02562 * 12 11 9 46 46 H 1.07996 * 125.04859 * 0.02713 * 21 20 17 47 47 H 1.07994 * 119.20264 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.29204 * 179.97438 * 27 26 25 49 49 H 1.08002 * 120.98170 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.0682 3.5935 1.2707 6 6 3.5649 1.4442 -0.1257 7 7 3.9475 0.9092 -1.4348 8 6 3.6544 1.6706 -2.6514 9 6 4.4768 2.9334 -2.6641 10 1 5.1508 3.1471 -1.8477 11 6 4.3696 3.8154 -3.7185 12 7 5.0877 4.9171 -3.7298 13 14 3.2045 3.4454 -5.1309 14 1 1.8689 4.0233 -4.8352 15 1 3.7370 4.0436 -6.3814 16 1 3.0814 1.9750 -5.2988 17 16 4.7052 -0.5596 -1.5395 18 8 4.3637 -1.2724 -0.3587 19 8 4.4466 -1.0522 -2.8470 20 6 6.4394 -0.2590 -1.4551 21 6 7.2723 -0.6508 -0.4781 22 7 8.5470 -0.2368 -0.7581 23 1 9.3217 -0.4041 -0.1987 24 6 8.5670 0.4551 -1.9454 25 7 9.5326 1.0496 -2.6336 26 6 9.2923 1.6619 -3.7734 27 6 8.0163 1.7171 -4.3132 28 6 6.9687 1.1156 -3.6418 29 6 7.2466 0.4714 -2.4338 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6054 1.9816 -0.8418 36 1 0.5534 2.0698 1.4273 37 1 2.1204 1.6253 2.1450 38 1 3.1566 3.6509 1.2584 39 1 1.6691 4.0678 0.3741 40 1 1.6872 4.1069 2.1535 41 1 3.9950 0.8236 0.6603 42 1 3.9363 2.4642 -0.0274 43 1 3.9008 1.0678 -3.5256 44 1 2.5952 1.9267 -2.6735 45 1 5.0120 5.5378 -4.4714 46 1 6.9807 -1.2115 0.3977 47 1 10.1086 2.1325 -4.3010 48 1 7.8426 2.2256 -5.2501 49 1 5.9649 1.1429 -4.0393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079354762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:56 Heat of formation + Delta-G solvation = -14.646994 kcal Electronic energy + Delta-G solvation = -33136.292805 eV Core-core repulsion = 28997.736989 eV Total energy + Delta-G solvation = -4138.555815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.28461 -37.83741 -37.60749 -36.64353 -35.29815 -34.61472 -32.66955 -32.33470 -31.48388 -29.93613 -29.11417 -28.59882 -26.70196 -23.88708 -23.47381 -22.40227 -22.31481 -22.05517 -21.52447 -19.31312 -18.31391 -17.98926 -17.13559 -16.76824 -16.60714 -15.84299 -15.74687 -15.37881 -14.88297 -14.42253 -14.39933 -14.29499 -14.23664 -14.04597 -13.53520 -13.13006 -13.02349 -12.72460 -12.59412 -12.36612 -12.16582 -12.04159 -11.84380 -11.78401 -11.68071 -11.59853 -11.47454 -11.36399 -11.18241 -11.03071 -10.91783 -10.71727 -10.57752 -10.32894 -10.21845 -10.11371 -9.93890 -9.90170 -9.57754 -9.10810 -8.65821 -8.25959 -8.17374 -8.00341 -6.14976 -4.13942 1.01147 1.22789 1.68463 2.42600 2.80863 3.22632 3.31558 3.37056 3.64381 4.22634 4.30104 4.33505 4.65162 4.72163 4.93773 5.09346 5.13711 5.17462 5.19377 5.25047 5.41601 5.50728 5.56511 5.58577 5.63527 5.64404 5.73543 5.81929 5.99182 6.02207 6.09969 6.14909 6.19152 6.20873 6.26778 6.38679 6.44316 6.46792 6.53235 6.62967 6.65596 6.73011 6.76096 6.81035 6.90541 7.12433 7.15348 7.31895 7.36436 7.57156 8.23241 8.42853 8.91367 9.45005 10.96994 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008423 B = 0.005412 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.297712 B = 5172.665913 C = 6928.632634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.102 4.102 4 C -0.114 4.114 5 C -0.154 4.154 6 C 0.134 3.866 7 N -0.972 5.972 8 C 0.214 3.786 9 C -0.528 4.528 10 H 0.081 0.919 11 C 0.080 3.920 12 N -0.889 5.889 13 Si 0.852 3.148 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.258 1.258 17 S 2.711 3.289 18 O -0.977 6.977 19 O -0.964 6.964 20 C -0.735 4.735 21 C 0.186 3.814 22 N -0.573 5.573 23 H 0.420 0.580 24 C 0.272 3.728 25 N -0.505 5.505 26 C 0.134 3.866 27 C -0.182 4.182 28 C 0.003 3.997 29 C -0.075 4.075 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.030 0.970 45 H 0.264 0.736 46 H 0.194 0.806 47 H 0.159 0.841 48 H 0.139 0.861 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -7.855 7.298 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.123 4.123 4 C -0.152 4.152 5 C -0.212 4.212 6 C 0.008 3.992 7 N -0.810 5.810 8 C 0.091 3.909 9 C -0.567 4.567 10 H 0.099 0.901 11 C -0.123 4.123 12 N -0.527 5.527 13 Si 0.679 3.321 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.182 1.182 17 S 2.800 3.200 18 O -0.967 6.967 19 O -0.954 6.954 20 C -0.829 4.829 21 C 0.052 3.948 22 N -0.178 5.178 23 H 0.258 0.742 24 C 0.040 3.960 25 N -0.219 5.219 26 C -0.031 4.031 27 C -0.203 4.203 28 C -0.024 4.024 29 C -0.082 4.082 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.210 0.790 47 H 0.176 0.824 48 H 0.157 0.843 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.522 -8.548 7.515 11.483 hybrid contribution -0.334 0.611 -0.829 1.082 sum 1.189 -7.937 6.686 10.446 Atomic orbital electron populations 1.21827 0.96462 1.01000 1.01619 1.21547 0.95224 0.96657 1.02116 1.21559 0.96423 0.95905 0.98393 1.21532 1.00724 0.95817 0.97130 1.21826 1.02028 0.96004 1.01301 1.21253 0.94185 1.00898 0.82899 1.57050 1.71628 1.38983 1.13357 1.19604 0.97253 0.92615 0.81477 1.21287 1.24540 1.03021 1.07806 0.90115 1.24781 0.95183 0.94784 0.97588 1.69886 1.40148 1.10703 1.31936 0.87205 0.82117 0.79904 0.82918 1.19964 1.20936 1.18240 1.01161 0.72658 0.73030 0.73156 1.93508 1.83032 1.70829 1.49341 1.93539 1.84295 1.78216 1.39392 1.32196 1.25371 1.20510 1.04821 1.21745 0.81731 0.94033 0.97293 1.41753 1.09742 1.47112 1.19173 0.74206 1.18385 0.91166 0.97558 0.88880 1.66435 1.34605 1.12229 1.08602 1.22387 0.96429 0.94388 0.89854 1.21863 0.93295 1.02513 1.02658 1.21264 1.00509 0.89805 0.90791 1.18893 0.92331 1.01149 0.95799 0.92703 0.92899 0.93299 0.92819 0.91500 0.90022 0.92018 0.92299 0.92167 0.92272 0.93618 0.90952 0.89817 0.93642 0.95236 0.92613 0.78963 0.82416 0.84336 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 37.15 0.36 -1.53 16 2 C -0.12 -1.73 4.92 -26.73 -0.13 -1.86 16 3 C -0.10 -1.54 1.92 -90.62 -0.17 -1.72 16 4 C -0.11 -1.44 5.25 -26.74 -0.14 -1.58 16 5 C -0.15 -2.03 9.49 37.16 0.35 -1.68 16 6 C 0.13 2.22 4.76 -4.04 -0.02 2.20 16 7 N -0.97 -18.54 2.38 -115.66 -0.27 -18.81 16 8 C 0.21 4.67 4.21 -5.20 -0.02 4.65 16 9 C -0.53 -12.96 8.07 -34.44 -0.28 -13.24 16 10 H 0.08 2.19 7.77 -52.48 -0.41 1.78 16 11 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 12 N -0.89 -24.58 13.96 55.43 0.77 -23.81 16 13 Si 0.85 19.60 27.47 -169.99 -4.67 14.93 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 17 S 2.71 50.80 5.41 -107.50 -0.58 50.22 16 18 O -0.98 -17.49 15.71 -57.17 -0.90 -18.39 16 19 O -0.96 -20.82 16.53 -57.17 -0.95 -21.76 16 20 C -0.73 -13.01 6.38 -37.72 -0.24 -13.25 16 21 C 0.19 2.56 11.47 -16.70 -0.19 2.37 16 22 N -0.57 -7.81 6.05 -12.14 -0.07 -7.88 16 23 H 0.42 4.07 8.96 -40.82 -0.37 3.70 16 24 C 0.27 4.81 8.43 -155.69 -1.31 3.50 16 25 N -0.51 -8.84 10.39 -12.27 -0.13 -8.96 16 26 C 0.13 2.16 11.14 -17.50 -0.20 1.97 16 27 C -0.18 -3.21 10.10 -39.44 -0.40 -3.61 16 28 C 0.00 0.05 9.55 -39.05 -0.37 -0.32 16 29 C -0.08 -1.47 6.38 -105.11 -0.67 -2.14 16 30 H 0.05 0.60 6.49 -51.93 -0.34 0.27 16 31 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.88 6.92 -51.93 -0.36 0.52 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.35 7.01 -51.93 -0.36 0.98 16 36 H 0.06 0.71 6.41 -51.93 -0.33 0.38 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.84 6.71 -51.93 -0.35 0.49 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 1.08 7.09 -51.93 -0.37 0.71 16 42 H 0.08 1.47 5.76 -51.93 -0.30 1.18 16 43 H 0.05 1.04 5.00 -51.92 -0.26 0.78 16 44 H 0.03 0.64 6.48 -51.93 -0.34 0.30 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 48 H 0.14 2.16 8.06 -52.48 -0.42 1.73 16 49 H 0.15 3.15 6.20 -52.49 -0.33 2.82 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -31.86 397.99 -11.41 -43.26 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.08 Total: 9.46 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.53 Total: -24.25 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.30 Total: -59.46 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.84 Total: -40.16 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Atomic # 16 Polarization: 50.80 SS G_CDS: -0.58 Total: 50.22 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.86 -11.41 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079354762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.617 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds