Wall clock time and date at job start Tue Mar 31 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47254 * 2 1 4 4 C 1.52992 * 109.47072 * 65.00299 * 3 2 1 5 5 C 1.52999 * 109.47459 * 183.53086 * 4 3 2 6 6 C 1.53008 * 109.46950 * 185.00048 * 3 2 1 7 7 N 1.46500 * 109.47091 * 65.51858 * 6 3 2 8 8 C 1.46492 * 120.00094 * 68.65074 * 7 6 3 9 9 C 1.50700 * 109.46928 * 66.72499 * 8 7 6 10 10 H 1.08004 * 120.00228 * 0.02562 * 9 8 7 11 11 C 1.37886 * 119.99919 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99802 * 180.02562 * 11 9 8 13 13 Si 1.86791 * 120.00010 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47398 * 89.99486 * 13 11 9 15 15 H 1.48500 * 109.47007 * 209.99939 * 13 11 9 16 16 H 1.48504 * 109.47159 * 329.99717 * 13 11 9 17 17 S 1.65603 * 119.99852 * 248.93137 * 7 6 3 18 18 O 1.42101 * 106.40076 * 23.25935 * 17 7 6 19 19 O 1.42094 * 106.40571 * 156.18479 * 17 7 6 20 20 C 1.76206 * 107.21482 * 269.72546 * 17 7 6 21 21 C 1.34227 * 126.56607 * 114.68860 * 20 17 7 22 22 N 1.36916 * 109.91083 * 179.89293 * 21 20 17 23 23 H 0.97006 * 124.99060 * 180.14079 * 22 21 20 24 24 C 1.37429 * 110.02563 * 0.37750 * 22 21 20 25 25 N 1.32652 * 133.19447 * 179.74689 * 24 22 21 26 26 C 1.31595 * 121.66754 * 180.02562 * 25 24 22 27 27 C 1.38657 * 121.58438 * 0.02562 * 26 25 24 28 28 C 1.38198 * 119.41430 * 359.96991 * 27 26 25 29 29 C 1.39696 * 118.03551 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47150 * 299.99927 * 1 2 3 31 31 H 1.09010 * 109.47267 * 59.99512 * 1 2 3 32 32 H 1.08999 * 109.47283 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47150 * 240.00073 * 2 1 3 34 34 H 1.09000 * 109.47446 * 120.00502 * 2 1 3 35 35 H 1.08996 * 109.47326 * 305.00168 * 3 2 1 36 36 H 1.09003 * 109.47012 * 303.53110 * 4 3 2 37 37 H 1.09006 * 109.47468 * 63.52679 * 4 3 2 38 38 H 1.09000 * 109.46755 * 293.98640 * 5 4 3 39 39 H 1.08996 * 109.47201 * 53.98496 * 5 4 3 40 40 H 1.08994 * 109.47509 * 173.98604 * 5 4 3 41 41 H 1.09000 * 109.47018 * 305.51836 * 6 3 2 42 42 H 1.08991 * 109.46795 * 185.51790 * 6 3 2 43 43 H 1.09010 * 109.47246 * 186.72345 * 8 7 6 44 44 H 1.08998 * 109.47645 * 306.72604 * 8 7 6 45 45 H 0.97003 * 120.00259 * 180.02562 * 12 11 9 46 46 H 1.07996 * 125.04859 * 0.02713 * 21 20 17 47 47 H 1.07994 * 119.20264 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.29204 * 179.97438 * 27 26 25 49 49 H 1.08002 * 120.98170 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.0682 3.5935 1.2707 6 6 3.5649 1.4442 -0.1257 7 7 3.9475 0.9092 -1.4348 8 6 3.6544 1.6706 -2.6514 9 6 4.4768 2.9334 -2.6641 10 1 5.1508 3.1471 -1.8477 11 6 4.3696 3.8154 -3.7185 12 7 5.0877 4.9171 -3.7298 13 14 3.2045 3.4454 -5.1309 14 1 1.8689 4.0233 -4.8352 15 1 3.7370 4.0436 -6.3814 16 1 3.0814 1.9750 -5.2988 17 16 4.7052 -0.5596 -1.5395 18 8 4.3637 -1.2724 -0.3587 19 8 4.4466 -1.0522 -2.8470 20 6 6.4394 -0.2590 -1.4551 21 6 7.2723 -0.6508 -0.4781 22 7 8.5470 -0.2368 -0.7581 23 1 9.3217 -0.4041 -0.1987 24 6 8.5670 0.4551 -1.9454 25 7 9.5326 1.0496 -2.6336 26 6 9.2923 1.6619 -3.7734 27 6 8.0163 1.7171 -4.3132 28 6 6.9687 1.1156 -3.6418 29 6 7.2466 0.4714 -2.4338 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6054 1.9816 -0.8418 36 1 0.5534 2.0698 1.4273 37 1 2.1204 1.6253 2.1450 38 1 3.1566 3.6509 1.2584 39 1 1.6691 4.0678 0.3741 40 1 1.6872 4.1069 2.1535 41 1 3.9950 0.8236 0.6603 42 1 3.9363 2.4642 -0.0274 43 1 3.9008 1.0678 -3.5256 44 1 2.5952 1.9267 -2.6735 45 1 5.0120 5.5378 -4.4714 46 1 6.9807 -1.2115 0.3977 47 1 10.1086 2.1325 -4.3010 48 1 7.8426 2.2256 -5.2501 49 1 5.9649 1.1429 -4.0393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079354762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:55 Heat of formation + Delta-G solvation = -34.743236 kcal Electronic energy + Delta-G solvation = -33137.164243 eV Core-core repulsion = 28997.736989 eV Total energy + Delta-G solvation = -4139.427254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.56401 -39.13612 -38.90313 -38.15834 -36.82739 -36.11701 -34.27099 -33.98571 -32.54536 -31.24171 -30.42161 -30.21667 -28.15066 -25.25769 -24.80488 -23.72816 -23.65521 -23.41282 -22.91165 -20.55198 -19.65628 -19.46098 -18.89987 -18.39486 -17.90676 -17.26222 -17.20636 -16.76141 -16.19401 -16.07774 -15.77403 -15.61380 -15.46574 -15.32287 -14.80304 -14.51431 -14.43020 -14.17161 -14.05731 -13.86473 -13.54656 -13.43559 -13.30552 -13.16480 -13.09383 -13.04343 -12.92054 -12.64438 -12.62216 -12.46724 -12.36552 -12.10384 -11.98838 -11.83195 -11.63414 -11.55973 -11.38009 -11.20748 -11.11369 -10.67676 -10.48672 -9.66163 -9.53637 -9.45188 -8.19003 -6.19210 -0.41670 -0.09819 0.31523 1.09992 1.35385 1.41254 1.49440 1.64113 2.18157 2.38403 2.82158 2.90209 3.15336 3.31525 3.50724 3.76711 3.88056 3.89603 4.01081 4.06642 4.12600 4.22101 4.28062 4.34790 4.49209 4.50662 4.56977 4.67116 4.70690 4.84208 4.87157 4.97261 5.00477 5.05724 5.06028 5.17633 5.18758 5.20306 5.23184 5.34656 5.35002 5.37512 5.42975 5.49236 5.56011 5.61506 5.70943 5.80514 5.91405 6.23902 6.41593 6.83388 6.92272 7.41767 8.96030 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008423 B = 0.005412 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.297712 B = 5172.665913 C = 6928.632634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.107 4.107 5 C -0.153 4.153 6 C 0.128 3.872 7 N -0.977 5.977 8 C 0.224 3.776 9 C -0.505 4.505 10 H 0.048 0.952 11 C 0.037 3.963 12 N -0.930 5.930 13 Si 0.899 3.101 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.253 1.253 17 S 2.722 3.278 18 O -0.968 6.968 19 O -1.000 7.000 20 C -0.778 4.778 21 C 0.224 3.776 22 N -0.553 5.553 23 H 0.442 0.558 24 C 0.256 3.744 25 N -0.507 5.507 26 C 0.132 3.868 27 C -0.188 4.188 28 C -0.033 4.033 29 C -0.100 4.100 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.035 0.965 44 H 0.033 0.967 45 H 0.264 0.736 46 H 0.244 0.756 47 H 0.199 0.801 48 H 0.151 0.849 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 -9.146 9.401 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.121 4.121 4 C -0.145 4.145 5 C -0.211 4.211 6 C 0.003 3.997 7 N -0.814 5.814 8 C 0.099 3.901 9 C -0.544 4.544 10 H 0.066 0.934 11 C -0.162 4.162 12 N -0.570 5.570 13 Si 0.724 3.276 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.177 1.177 17 S 2.814 3.186 18 O -0.959 6.959 19 O -0.990 6.990 20 C -0.874 4.874 21 C 0.088 3.912 22 N -0.159 5.159 23 H 0.284 0.716 24 C 0.024 3.976 25 N -0.220 5.220 26 C -0.032 4.032 27 C -0.209 4.209 28 C -0.060 4.060 29 C -0.106 4.106 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.260 0.740 47 H 0.215 0.785 48 H 0.169 0.831 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.691 -9.857 9.642 13.892 hybrid contribution -0.280 0.974 -1.385 1.716 sum 1.411 -8.883 8.257 12.210 Atomic orbital electron populations 1.21812 0.94683 1.01913 1.02235 1.21555 0.96877 0.95846 1.01355 1.21538 0.94965 0.96477 0.99153 1.21505 1.01932 0.94956 0.96061 1.21807 1.01135 0.96765 1.01349 1.21438 0.95655 1.00328 0.82257 1.57003 1.72316 1.38784 1.13254 1.19291 0.96694 0.91436 0.82636 1.21245 1.23336 1.03595 1.06227 0.93376 1.25337 0.96544 0.94688 0.99677 1.69997 1.42175 1.11922 1.32903 0.86435 0.80633 0.79977 0.80542 1.19279 1.20703 1.17695 1.00586 0.72931 0.72583 0.72495 1.93499 1.83348 1.70554 1.48488 1.93488 1.85231 1.78955 1.41362 1.31953 1.24982 1.23684 1.06747 1.22519 0.80749 0.91097 0.96837 1.41757 1.10668 1.45546 1.17976 0.71570 1.18654 0.90574 0.98183 0.90173 1.66568 1.34367 1.12194 1.08909 1.22998 0.96828 0.93752 0.89592 1.22125 0.93629 1.02049 1.03080 1.21261 1.00161 0.92231 0.92348 1.19156 0.93851 1.01618 0.96005 0.90816 0.93565 0.92281 0.95157 0.90611 0.92136 0.90285 0.90563 0.93487 0.94207 0.91501 0.88863 0.91419 0.94716 0.94930 0.92695 0.73962 0.78470 0.83148 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.67 71.98 0.70 -2.73 16 2 C -0.12 -3.32 4.92 30.59 0.15 -3.17 16 3 C -0.10 -2.97 1.92 -10.79 -0.02 -3.00 16 4 C -0.11 -2.48 5.25 30.59 0.16 -2.32 16 5 C -0.15 -3.91 9.49 71.98 0.68 -3.23 16 6 C 0.13 4.27 4.76 86.38 0.41 4.68 16 7 N -0.98 -38.02 2.38 -519.85 -1.23 -39.25 16 8 C 0.22 10.16 4.21 85.63 0.36 10.52 16 9 C -0.50 -25.91 8.07 25.60 0.21 -25.71 16 10 H 0.05 2.76 7.77 -2.91 -0.02 2.74 16 11 C 0.04 1.98 5.47 84.66 0.46 2.44 16 12 N -0.93 -53.24 13.96 21.45 0.30 -52.94 16 13 Si 0.90 41.38 27.47 68.60 1.88 43.27 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 17 S 2.72 102.20 5.41 -56.49 -0.31 101.90 16 18 O -0.97 -33.15 15.71 -128.00 -2.01 -35.16 16 19 O -1.00 -44.52 16.53 -128.00 -2.12 -46.64 16 20 C -0.78 -27.05 6.38 23.48 0.15 -26.90 16 21 C 0.22 5.51 11.47 82.98 0.95 6.47 16 22 N -0.55 -13.54 6.05 -192.34 -1.16 -14.71 16 23 H 0.44 6.94 8.96 -92.70 -0.83 6.11 16 24 C 0.26 8.80 8.43 133.93 1.13 9.93 16 25 N -0.51 -17.11 10.39 -192.74 -2.00 -19.11 16 26 C 0.13 4.17 11.14 84.83 0.95 5.12 16 27 C -0.19 -6.78 10.10 22.36 0.23 -6.56 16 28 C -0.03 -1.41 9.55 22.61 0.22 -1.19 16 29 C -0.10 -3.93 6.38 -20.18 -0.13 -4.06 16 30 H 0.07 1.40 6.49 -2.39 -0.02 1.39 16 31 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.03 0.98 6.92 -2.39 -0.02 0.96 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.03 7.01 -2.39 -0.02 2.01 16 36 H 0.08 1.59 6.41 -2.39 -0.02 1.57 16 37 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.05 1.30 6.71 -2.39 -0.02 1.29 16 39 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 2.66 7.09 -2.39 -0.02 2.65 16 42 H 0.07 2.46 5.76 -2.39 -0.01 2.44 16 43 H 0.03 1.67 5.00 -2.38 -0.01 1.66 16 44 H 0.03 1.45 6.48 -2.39 -0.02 1.44 16 45 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.24 3.34 8.06 -2.91 -0.02 3.32 16 47 H 0.20 4.43 8.06 -2.91 -0.02 4.41 16 48 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 49 H 0.12 5.62 6.20 -2.91 -0.02 5.60 16 Total: -1.00 -72.17 397.99 0.05 -72.12 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.10 Total: 30.22 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 6.60 Total: -39.71 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -4.10 Total: -126.01 kcal Atomic # 8 Polarization: -77.67 SS G_CDS: -4.13 Total: -81.80 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.88 Total: 43.27 kcal Atomic # 16 Polarization: 102.20 SS G_CDS: -0.31 Total: 101.90 kcal Total: -72.17 0.05 -72.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079354762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.381 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds