Wall clock time and date at job start Tue Mar 31 2020 05:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 120.00321 * 2 1 4 4 O 1.21548 * 120.00336 * 175.02714 * 3 2 1 5 5 C 1.47894 * 119.99715 * 355.03143 * 3 2 1 6 6 C 1.39917 * 120.02588 * 42.74588 * 5 3 2 7 7 C 1.38327 * 120.35742 * 179.78368 * 6 5 3 8 8 C 1.37760 * 120.41146 * 0.47793 * 7 6 5 9 9 C 1.40746 * 120.03620 * 359.78006 * 8 7 6 10 10 C 1.41445 * 120.17419 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00012 * 332.50925 * 10 9 8 12 12 C 1.39939 * 119.99833 * 152.50419 * 10 9 8 13 13 N 1.30830 * 119.99789 * 348.53610 * 12 10 9 14 14 Si 1.86798 * 119.99834 * 168.52914 * 12 10 9 15 15 H 1.48504 * 109.46878 * 90.00298 * 14 12 10 16 16 H 1.48500 * 109.47291 * 210.00055 * 14 12 10 17 17 H 1.48496 * 109.47263 * 330.00427 * 14 12 10 18 18 C 1.38994 * 120.02311 * 223.02843 * 5 3 2 19 19 C 1.46499 * 120.00162 * 179.97438 * 2 1 3 20 20 H 1.08996 * 109.51041 * 179.97438 * 19 2 1 21 21 C 1.53126 * 109.50171 * 59.92013 * 19 2 1 22 22 C 1.53117 * 109.15916 * 182.40503 * 21 19 2 23 23 C 1.53043 * 109.27958 * 57.65831 * 22 21 19 24 24 N 1.46847 * 109.51860 * 300.81689 * 23 22 21 25 25 C 1.39678 * 110.99800 * 185.83532 * 24 23 22 26 26 C 1.38906 * 120.07287 * 123.67731 * 25 24 23 27 27 C 1.38102 * 119.92507 * 179.77020 * 26 25 24 28 28 C 1.38291 * 120.07402 * 0.51382 * 27 26 25 29 29 C 1.38282 * 120.14929 * 359.73940 * 28 27 26 30 30 C 1.38109 * 120.07390 * 0.02562 * 29 28 27 31 31 C 1.46847 * 111.23061 * 61.72614 * 24 23 22 32 32 H 1.08997 * 109.47616 * 276.04888 * 1 2 3 33 33 H 1.09006 * 109.47020 * 36.04418 * 1 2 3 34 34 H 1.09000 * 109.47250 * 156.04216 * 1 2 3 35 35 H 1.07997 * 119.81812 * 0.02562 * 6 5 3 36 36 H 1.08001 * 119.79215 * 180.21453 * 7 6 5 37 37 H 1.07993 * 119.97752 * 179.75965 * 8 7 6 38 38 H 0.97004 * 119.99349 * 179.97438 * 13 12 10 39 39 H 1.08003 * 120.20159 * 359.94904 * 18 5 3 40 40 H 1.08993 * 109.52297 * 302.31373 * 21 19 2 41 41 H 1.08996 * 109.51926 * 62.44151 * 21 19 2 42 42 H 1.08998 * 109.50306 * 177.59738 * 22 21 19 43 43 H 1.09000 * 109.50472 * 297.71183 * 22 21 19 44 44 H 1.08997 * 109.45874 * 60.83093 * 23 22 21 45 45 H 1.08996 * 109.46446 * 180.81408 * 23 22 21 46 46 H 1.08005 * 120.03824 * 0.02562 * 26 25 24 47 47 H 1.07997 * 119.96441 * 180.25296 * 27 26 25 48 48 H 1.07998 * 119.92462 * 179.72604 * 28 27 26 49 49 H 1.07993 * 119.96779 * 180.02562 * 29 28 27 50 50 H 1.08002 * 120.03813 * 179.97438 * 30 29 28 51 51 H 1.09008 * 109.49575 * 178.27813 * 31 24 23 52 52 H 1.08998 * 109.43624 * 58.30664 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3510 1.1692 0.0912 5 6 1.4036 2.4456 -0.1109 6 6 0.2249 2.6407 0.6172 7 6 -0.4659 3.8354 0.5220 8 6 -0.0071 4.8429 -0.2978 9 6 1.1739 4.6627 -1.0420 10 6 1.6474 5.6950 -1.8851 11 1 0.9536 6.4026 -2.3143 12 6 3.0149 5.7994 -2.1630 13 7 3.8775 5.0945 -1.4770 14 14 3.6087 6.9452 -3.5136 15 1 3.8758 8.2890 -2.9408 16 1 4.8569 6.4039 -4.1088 17 1 2.5655 7.0537 -4.5649 18 6 1.8799 3.4518 -0.9431 19 6 2.1975 -1.2687 0.0006 20 1 3.2692 -1.0702 0.0000 21 6 1.8266 -2.0737 -1.2481 22 6 2.5499 -3.4227 -1.2095 23 6 2.1682 -4.1642 0.0737 24 7 2.5441 -3.3535 1.2391 25 6 2.3304 -4.0560 2.4273 26 6 3.3766 -4.2466 3.3210 27 6 3.1608 -4.9374 4.4971 28 6 1.9075 -5.4484 4.7807 29 6 0.8650 -5.2651 3.8908 30 6 1.0728 -4.5709 2.7151 31 6 1.8268 -2.0722 1.2492 32 1 -0.3634 0.1083 1.0219 33 1 -0.3633 0.8310 -0.6047 34 1 -0.3634 -0.9391 -0.4173 35 1 -0.1455 1.8559 1.2599 36 1 -1.3730 3.9775 1.0908 37 1 -0.5540 5.7713 -0.3698 38 1 4.8254 5.1667 -1.6699 39 1 2.7873 3.3041 -1.5098 40 1 0.7494 -2.2384 -1.2686 41 1 2.1280 -1.5231 -2.1392 42 1 2.2567 -4.0177 -2.0745 43 1 3.6273 -3.2586 -1.2283 44 1 1.0926 -4.3400 0.0853 45 1 2.6928 -5.1189 0.1113 46 1 4.3568 -3.8513 3.0982 47 1 3.9728 -5.0825 5.1943 48 1 1.7425 -5.9922 5.6992 49 1 -0.1126 -5.6650 4.1154 50 1 0.2583 -4.4284 2.0203 51 1 2.1032 -1.5076 2.1397 52 1 0.7527 -2.2578 1.2559 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079358446.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:53 Heat of formation + Delta-G solvation = 10.502314 kcal Electronic energy + Delta-G solvation = -32405.392278 eV Core-core repulsion = 28333.742073 eV Total energy + Delta-G solvation = -4071.650205 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.189 amu Computer time = 4.36 seconds Orbital eigenvalues (eV) -41.69451 -40.78032 -39.17812 -38.53540 -36.59274 -35.56556 -34.20377 -32.35434 -31.83184 -31.33469 -30.76034 -29.94669 -27.96160 -27.16441 -25.56109 -24.97317 -23.61340 -23.10298 -22.80255 -22.23902 -20.71365 -20.30181 -19.26080 -18.47133 -17.69730 -17.49669 -16.99673 -16.61193 -16.55432 -16.44121 -16.11436 -15.87141 -15.58365 -15.24391 -15.10679 -14.79423 -14.61955 -14.46553 -14.34413 -14.15942 -14.12583 -13.88261 -13.62765 -13.53564 -13.34326 -13.25703 -12.80350 -12.68654 -12.57176 -12.48147 -12.40592 -12.15915 -12.11873 -11.99244 -11.87560 -11.70421 -11.61730 -11.47660 -11.10900 -10.68543 -9.86538 -9.81207 -9.61699 -9.45176 -9.42090 -9.33265 -8.60287 -6.40199 0.33876 0.47725 0.51129 1.00741 1.35805 1.46046 1.51556 1.82608 1.97653 2.19236 2.74049 2.82399 2.85442 3.57823 3.65159 3.70286 3.90262 3.93317 4.04223 4.07993 4.09250 4.19267 4.25393 4.27035 4.40142 4.45817 4.50631 4.51931 4.55049 4.58795 4.71544 4.71952 4.78102 4.81706 4.86519 4.90461 4.93515 5.04770 5.08946 5.12587 5.17989 5.20844 5.28609 5.32796 5.47036 5.50600 5.56734 5.58538 5.61271 5.84660 5.89489 5.94072 5.97129 6.04978 6.27018 6.34544 6.44831 6.61215 6.89173 6.95020 7.19081 8.34230 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.002137 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.179516 B =13098.289049 C =13583.158302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.602 5.602 3 C 0.561 3.439 4 O -0.588 6.588 5 C -0.129 4.129 6 C -0.196 4.196 7 C -0.096 4.096 8 C -0.214 4.214 9 C 0.068 3.932 10 C -0.496 4.496 11 H 0.084 0.916 12 C 0.024 3.976 13 N -0.835 5.835 14 Si 0.985 3.015 15 H -0.260 1.260 16 H -0.274 1.274 17 H -0.252 1.252 18 C -0.133 4.133 19 C 0.143 3.857 20 H 0.068 0.932 21 C -0.123 4.123 22 C -0.108 4.108 23 C 0.063 3.937 24 N -0.515 5.515 25 C 0.075 3.925 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.127 4.127 29 C -0.114 4.114 30 C -0.154 4.154 31 C 0.074 3.926 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.284 0.716 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.119 0.881 47 H 0.141 0.859 48 H 0.146 0.854 49 H 0.144 0.856 50 H 0.128 0.872 51 H 0.054 0.946 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 -22.942 6.282 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.334 5.334 3 C 0.352 3.648 4 O -0.469 6.469 5 C -0.132 4.132 6 C -0.215 4.215 7 C -0.114 4.114 8 C -0.234 4.234 9 C 0.066 3.934 10 C -0.526 4.526 11 H 0.102 0.898 12 C -0.189 4.189 13 N -0.462 5.462 14 Si 0.806 3.194 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.175 1.175 18 C -0.153 4.153 19 C 0.039 3.961 20 H 0.086 0.914 21 C -0.162 4.162 22 C -0.146 4.146 23 C -0.063 4.063 24 N -0.237 5.237 25 C -0.019 4.019 26 C -0.135 4.135 27 C -0.137 4.137 28 C -0.144 4.144 29 C -0.133 4.133 30 C -0.174 4.174 31 C -0.053 4.053 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.137 0.863 47 H 0.159 0.841 48 H 0.164 0.836 49 H 0.161 0.839 50 H 0.146 0.854 51 H 0.072 0.928 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.089 -22.883 6.294 24.769 hybrid contribution 0.243 0.877 -0.477 1.028 sum -6.846 -22.006 5.817 23.769 Atomic orbital electron populations 1.22224 0.77391 1.04329 1.02868 1.47764 1.08309 1.04321 1.73005 1.18980 0.86419 0.84988 0.74394 1.90684 1.16318 1.88011 1.51892 1.19662 0.97545 0.93426 1.02574 1.21008 0.95704 0.99701 1.05096 1.20917 0.99558 0.92820 0.98093 1.21422 1.00294 0.99867 1.01786 1.17930 0.92103 0.91779 0.91564 1.19854 0.93290 1.12375 1.27044 0.89772 1.26892 0.96777 0.97401 0.97859 1.69922 1.03924 1.36480 1.35826 0.85155 0.78240 0.78069 0.77964 1.18466 1.19860 1.17548 1.21345 1.00323 0.92537 1.01105 1.21001 0.97001 0.82337 0.95735 0.91354 1.21927 1.02015 0.96184 0.96041 1.21548 1.00613 0.94772 0.97683 1.22222 0.99690 0.96064 0.88361 1.59347 1.58920 1.03810 1.01663 1.18923 0.93427 0.97653 0.91854 1.21232 0.98795 0.99239 0.94255 1.21384 0.98408 0.97439 0.96473 1.21523 0.92747 0.99833 1.00342 1.21352 1.00193 0.98197 0.93548 1.21795 0.96809 1.00008 0.98822 1.22178 0.96726 0.89346 0.97094 0.91064 0.90797 0.88542 0.84690 0.84362 0.87297 0.90578 0.88798 0.89447 0.92626 0.88193 0.92209 0.92768 0.89723 0.86311 0.84076 0.83639 0.83857 0.85392 0.92774 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 7.95 127.77 1.02 2.82 16 2 N -0.60 -20.24 2.76 -825.65 -2.28 -22.53 16 3 C 0.56 25.84 7.30 86.80 0.63 26.47 16 4 O -0.59 -32.37 16.30 -3.87 -0.06 -32.43 16 5 C -0.13 -6.21 5.11 -20.13 -0.10 -6.31 16 6 C -0.20 -7.82 7.65 22.70 0.17 -7.65 16 7 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 8 C -0.21 -10.00 9.78 22.77 0.22 -9.78 16 9 C 0.07 3.74 5.56 -21.32 -0.12 3.62 16 10 C -0.50 -27.18 9.07 23.47 0.21 -26.97 16 11 H 0.08 4.32 7.87 -2.91 -0.02 4.30 16 12 C 0.02 1.28 5.25 85.25 0.45 1.72 16 13 N -0.84 -48.04 10.79 21.83 0.24 -47.80 16 14 Si 0.99 40.20 29.57 68.60 2.03 42.23 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 18 C -0.13 -7.44 8.28 23.01 0.19 -7.25 16 19 C 0.14 4.23 2.67 45.05 0.12 4.35 16 20 H 0.07 2.61 6.91 -2.39 -0.02 2.59 16 21 C -0.12 -2.78 5.31 30.68 0.16 -2.62 16 22 C -0.11 -1.97 6.09 30.65 0.19 -1.78 16 23 C 0.06 1.09 5.06 86.33 0.44 1.52 16 24 N -0.52 -11.64 4.62 -695.38 -3.21 -14.85 16 25 C 0.07 1.58 4.68 38.21 0.18 1.76 16 26 C -0.12 -2.43 9.97 22.40 0.22 -2.20 16 27 C -0.12 -1.93 10.04 22.25 0.22 -1.71 16 28 C -0.13 -1.75 10.04 22.29 0.22 -1.53 16 29 C -0.11 -1.62 10.04 22.25 0.22 -1.40 16 30 C -0.15 -2.64 8.74 22.40 0.20 -2.44 16 31 C 0.07 1.84 4.52 86.33 0.39 2.23 16 32 H 0.07 1.53 6.83 -2.39 -0.02 1.51 16 33 H 0.07 2.07 6.08 -2.38 -0.01 2.05 16 34 H 0.10 1.69 6.41 -2.39 -0.02 1.68 16 35 H 0.14 4.35 5.59 -2.91 -0.02 4.34 16 36 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.28 15.15 8.30 -92.71 -0.77 14.38 16 39 H 0.09 5.88 6.14 -2.91 -0.02 5.87 16 40 H 0.09 1.56 6.59 -2.39 -0.02 1.55 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 0.78 7.15 -2.39 -0.02 0.76 16 45 H 0.08 1.37 8.11 -2.39 -0.02 1.35 16 46 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 47 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 48 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 50 H 0.13 1.85 7.13 -2.91 -0.02 1.83 16 51 H 0.05 1.61 8.11 -2.38 -0.02 1.60 16 52 H 0.06 1.23 7.29 -2.39 -0.02 1.22 16 Total: -1.00 -73.20 409.77 3.09 -70.11 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.92 Total: 35.99 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.46 Total: -30.72 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -5.26 Total: -85.18 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.06 Total: -32.43 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -73.20 3.09 -70.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079358446.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.615 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.36 seconds